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URL: https://github.com/pjedge/longshot
Proper Citation: longshot (RRID:SCR_025318)
Description: Software variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). Enables accurate variant calling in diploid genomes from single-molecule long read sequencing. Takes as input aligned BAM/CRAM file and outputs phased VCF file with variants and haplotype information.
Resource Type: software resource, source code
Defining Citation: DOI:10.1038/s41467-019-12493-y
Keywords: variant calling, diploid genomes, long error prone reads, single molecule long read sequencing,
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