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URL: https://github.com/Lin-Xu-lab/SpaSNE.git
Proper Citation: SpaSNE (RRID:SCR_026223)
Description: Software extension of t-distributed stochastic neighbor embedding, the spatially resolved t-SNE (SpaSNE) designed to preserve both global gene expression and spatial structure for spatially resolved profiling data. Gives comprehensive low-dimensional visualization that could best reflect the molecular similarities of cells and the spatial interactions between cells.
Resource Type: software application, source code, software resource
Keywords: global gene expression, spatial structure, spatially resolved profiling data, low-dimensional visualization,
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