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URL: https://github.com/wdecoster/chopper
Proper Citation: chopper (RRID:SCR_026486)
Description: Software tool that combines the utility of NanoFilt and NanoLyse, for filtering sequencing reads based on quality, length, and contaminating sequences, delivers 7-fold speed up compared to the Python implementation, making use of the Rust-Bio library and Rust bindings to minimap2.
Resource Type: source code, software resource
Defining Citation: PMID:37171891
Keywords: filtering sequencing reads, quality, length, contaminating sequences,
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