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URL: https://github.com/KopalliV/Benchmarking_graph_pipelines
Proper Citation: Benchmarking Graph Pipelines (RRID:SCR_026567)
Description: Software pipelines for benchmarking workflow for evaluating graph-based pangenome construction tools. The repository contains scripts to compare the performance of Minigraph-Cactus, PGGB, Minigraph pipelines using both simulated and real-world datasets. It includes data processing steps, evaluation metrics, and reproducible scripts for analyzing structural variants in pangenomes.
Synonyms: , Benchmarking Pangenome Graph Pipelines, Benchmarking Pangenome Graph pipelines
Resource Type: software resource, software toolkit, source code
Keywords: benchmarking workflow, evaluating graph-based pangenome construction tools,
Availability: Free, Available for download, Freely available
Resource Name: Benchmarking Graph Pipelines
Resource ID: SCR_026567
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
