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URL: https://github.com/nf-core/cutandrun
Proper Citation: cutandrun (RRID:SCR_028798)
Description: Software analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis. Used to process and analyze CUT&RUN, CUT&Tag, and TIP-seq genomic data. It maps protein-DNA interactions and chromatin profiles (similar to ChIP-seq, but with lower background noise) in a reproducible, portable way.
Synonyms: nf-core/cutandrun
Resource Type: source code, software resource
Defining Citation: DOI:10.21105/joss.09672
Keywords: process and analyze, genomic data, QC, maps protein-DNA interactions and chromatin profiles,
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