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| Plasmid Name | Proper Citation | Insert Name | Organism | Bacterial Resistance | Defining Citation |
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pCRII-TOPO-mogat2 in situ probe Resource Report Resource Website |
RRID:Addgene_232139 | mogat2 | Danio rerio | Ampicillin and Kanamycin | PMID:39510175 | Backbone Marker:Invitrogen; Backbone Size:3900; Vector Backbone:pCRII-TOPO; Vector Types:in vitro transcription; Bacterial Resistance:Ampicillin and Kanamycin | 2026-08-15 01:31:47 | 0 | ||
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pCRII-TOPO-dgat1b in situ probe Resource Report Resource Website |
RRID:Addgene_232138 | dgat1b | Danio rerio | Ampicillin and Kanamycin | PMID:39510175 | Backbone Marker:Invitrogen; Backbone Size:3900; Vector Backbone:pCRII-TOPO; Vector Types:in vitro transcription; Bacterial Resistance:Ampicillin and Kanamycin | 2026-08-15 01:31:47 | 0 | ||
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pMT- eef1a1l1:sfGFP Resource Report Resource Website |
RRID:Addgene_254856 | eef1a1l1 | Danio rerio | Ampicillin | Backbone Marker:Sean Megason; Backbone Size:4314; Vector Backbone:pMTB Addgene #112225; Vector Types:; Bacterial Resistance:Ampicillin | 2026-08-15 01:36:16 | 0 | |||
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pTol2Dest_ubiquitin:loxp-stop-loxp-mCherry_pGH Resource Report Resource Website |
RRID:Addgene_226786 | ubiquitin promoter | Danio rerio | Ampicillin | PMID:42403048 | The discrepancies between the depositor's sequence and Addgene's sequences have no functional consequences. | Backbone Marker:Unknown; Backbone Size:6500; Vector Backbone:pTol2Dest-pGH_R4-R3; Vector Types:Cre/Lox, Zebrafish expression; Bacterial Resistance:Ampicillin | 2026-08-15 01:36:26 | 0 | |
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pTol2Dest_ziwi:loxp-stop-loxp-mCherry_pGH Resource Report Resource Website |
RRID:Addgene_226785 | ziwi promoter | Danio rerio | Ampicillin | PMID:42403048 | The discrepancies between the depositor's sequence and Addgene's sequences have no functional consequences. | Backbone Marker:Unknown; Backbone Size:9708; Vector Backbone:pTol2Dest-pGH_R4-R3; Vector Types:Cre/Lox, Zebrafish expression; Bacterial Resistance:Ampicillin | 2026-08-15 01:36:23 | 0 | |
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pTol2Dest_ziwi:iCre_pBH Resource Report Resource Website |
RRID:Addgene_226788 | ziwi promoter | Danio rerio | Ampicillin | PMID:42403048 | The discrepancies between the depositor's sequence and Addgene's sequences have no functional consequences. | Backbone Size:6946; Vector Backbone:pTol2Dest-pBH_R4-R2; Vector Types:Cre/Lox, Zebrafish expression; Bacterial Resistance:Ampicillin | 2026-08-15 01:36:23 | 0 | |
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p5E-askopos Resource Report Resource Website |
RRID:Addgene_226791 | askopos promoter | Danio rerio | Kanamycin | PMID:42403048 | The discrepancies between the depositor's sequence and Addgene's sequences have no functional consequences. | Backbone Marker:Tol2kit v1.0; Backbone Size:2643; Vector Backbone:p5E-MCS; Vector Types:Gateway 5'-entry vector; Bacterial Resistance:Kanamycin | 2026-08-15 01:36:23 | 0 | |
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mNeonAce-unc45 Resource Report Resource Website |
RRID:Addgene_253619 | Ace2N-mNeon | Danio rerio | Ampicillin | PMID:42109300 | Please visit https://doi.org/10.1101/2024.12.12.628143 for bioRxiv preprint. | Vector Backbone:pDestTol pA2; Vector Types:Zebrafish expression; Bacterial Resistance:Ampicillin | 2026-08-15 01:36:27 | 0 | |
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p5E-nos2 promoter_L4-R1 Resource Report Resource Website |
RRID:Addgene_226796 | nanos2 | Danio rerio | Kanamycin | Cloned by Maya Pahima. The putative zebrafish nos2 promoter was cloned from zebrafish ovary gDNA from a region directly upstream of the nos2 coding sequence with the following primers: 3’-ACTGGCCTAAAGGGTGTCCT-5’ and 3’-CGTCCCTTGCCTTTAGTCTG-5’. The cloned amplicon was inserted into the pCR8 cloning vector using the TOPO™ TA Cloning Kit (Thermo Fisher, K250020) for stabilization and sequencing. Putative nos2 promoter region was excised from the TOPO vector using EcoRI and SmaI, treated with T4 polymerase, then inserted into SmaI-linearized p5E-MCS (Addgene, #26029). | Backbone Marker:Nathan Lawson; Backbone Size:2810; Vector Backbone:p5E-MCS; Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin | 2026-08-15 01:36:26 | 0 | ||
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p3E-nanos2 3'utr_R2-R3 Resource Report Resource Website |
RRID:Addgene_226799 | nanos2 | Danio rerio | Kanamycin | Cloned by Maya Pahima. The putative zebrafish nos2 3'utr was cloned from zebrafish ovary gDNA using primers (3’-ATCAACCAATGCTGAATCTTTTTATAAAAAATTGAA-5' and 3’-AAATAAAATATATCAGGAGGAAACAAATATATCAGG-5') and inserted into the pCR4 cloning vector using the TOPO™ TA Cloning Kit (Thermo Fisher, K457502) for stabilization and sequencing (pCR4-nos2,3'utr). To insert the nos2,3’utr sequence into a Gateway Cloning vector, the region was amplified with attB primers (3'-GGGGACAGCTTTCTTGTACAAAGTGGTATATCAACCAATGCTGAATCTTTTTATAAAAAATTGAA-5' and 3'-GGGGACAACTTTGTATAATAAAGTTGTAAATAAAATATATCAGGAGGAAACAAATATATCAGG-5') and a BP reaction was performed with the Gateway BP Clonase II Enzyme mix (Invitrogen, 11789020) to recombine the amplicon into pDONR-P2R-P3 (Invitrogen, 12537-023) and produce p3E-nos2,3’utr. | Backbone Marker:Invitrogen; Backbone Size:2640; Vector Backbone:pDONR-P2R-P3; Vector Types:Bacterial Expression; Bacterial Resistance:Kanamycin | 2026-08-15 01:36:26 | 0 | ||
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PCRII-zSynA Resource Report Resource Website |
RRID:Addgene_20121 | zSynA | Danio rerio | Ampicillin | zSynA in situ probe. For antisense, cut with BamHI and transcribe with T7 | Backbone Marker:Invitrogen; Backbone Size:3961; Vector Backbone:PCRII-TOPO; Vector Types:in-situ; Bacterial Resistance:Ampicillin | 2026-08-15 01:11:51 | 0 | ||
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pT2KXIGdeltaIn-MCS-birA-tagRFP Resource Report Resource Website 1+ mentions |
RRID:Addgene_58378 | birA tagRFP | Danio rerio | Ampicillin | PMID:25231762 | Note: Addgene's quality control sequencing has found some discrepancies with the depositor's uploaded sequence. The depositing lab is aware of these differences, and they are not thought to affect plasmid function. | Backbone Marker:Kawakami; Backbone Size:6173; Vector Backbone:pT2KXIGdeltaIn; Vector Types:; Bacterial Resistance:Ampicillin | 2026-08-15 01:17:15 | 1 | |
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pT2KXIGdeltaIn-MCS-birA-EGFP Resource Report Resource Website |
RRID:Addgene_58377 | birA EGFP | Danio rerio | Ampicillin | PMID:25231762 | Note: Addgene's quality control sequencing has found some discrepancies with the depositor's uploaded sequence. The depositing lab is aware of these differences, and they are not thought to affect plasmid function. | Backbone Marker:Kawakami; Backbone Size:6208; Vector Backbone:pT2KXIGdeltaIn; Vector Types:; Bacterial Resistance:Ampicillin | 2026-08-15 01:17:15 | 0 | |
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pT2KXIGdeltaIn-MCS-Avi-EGFP-rpl10a Resource Report Resource Website 1+ mentions |
RRID:Addgene_58380 | avi-EGFP-rpl10a | Danio rerio | Ampicillin | PMID:25231762 | Note: Addgene's quality control sequencing has found some discrepancies with the depositor's uploaded sequence. The depositing lab is aware of these differences, and they are not thought to affect plasmid function. | Backbone Marker:Kawakami; Backbone Size:6173; Vector Backbone:pT2KXIGdeltaIn; Vector Types:; Bacterial Resistance:Ampicillin | 2026-08-15 01:17:15 | 1 | |
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p5'Entry-lck-5.5kb Resource Report Resource Website 1+ mentions |
RRID:Addgene_58890 | zebrafish lymphocyte-specific protein tyrosine kinase (lck) promoter, 5.5 kb | Danio rerio | Kanamycin | Backbone Marker:Invitrogen; Backbone Size:4777; Vector Backbone:pDONR P4-P1R; Vector Types:Gateway 5' entry clone; Bacterial Resistance:Kanamycin | mutated single nucleotide (T-->C, 13th nucleotide of insert) to create novel SfiI site at 5' end of promoter | 2026-08-15 01:17:19 | 1 | ||
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Tol2-elavl3-GCaMP6s Resource Report Resource Website 1+ mentions |
RRID:Addgene_59531 | elavl3 promoter | Danio rerio | Ampicillin | PMID:25068735 | Addgene NGS QC analysis identified multiple variants in the HuC promoter sequence. | Vector Backbone:MiniTol2; Vector Types:; Bacterial Resistance:Ampicillin | 2026-08-15 01:17:23 | 7 | |
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Tol2-elavl3-H2B-GCaMP6s Resource Report Resource Website 10+ mentions |
RRID:Addgene_59530 | elavl3 promoter | Danio rerio | Ampicillin | PMID:25068736 | Addgene NGS QC analysis identified multiple variants in the HuC promoter sequence. | Vector Backbone:MiniTol2; Vector Types:Transposable element; Bacterial Resistance:Ampicillin | 2026-08-15 01:17:23 | 14 | |
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pCRII HSPB15 Resource Report Resource Website |
RRID:Addgene_61039 | HSPB15 | Danio rerio | Ampicillin | PMID:18161059 | linearize with NotI, transcribe with SP6, probe length is 556. | Backbone Marker:Invitrogen; Backbone Size:3950; Vector Backbone:pCRII; Vector Types:Bacterial Expression; Bacterial Resistance:Ampicillin | 2026-08-15 01:17:38 | 0 | |
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pCRII HSPB9 Resource Report Resource Website |
RRID:Addgene_61038 | HSPB9 | Danio rerio | Ampicillin | PMID:18161059 | linearize with NotI, transcribe with SP6, probe length is 556. | Backbone Marker:Invitrogen; Backbone Size:3950; Vector Backbone:pCRII; Vector Types:Bacterial Expression; Bacterial Resistance:Ampicillin | 2026-08-15 01:17:38 | 0 | |
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pCRII HSPB12 Resource Report Resource Website |
RRID:Addgene_61037 | HSPB12 | Danio rerio | Ampicillin | PMID:18161059 | linearize with NotI, transcribe with SP6, probe length is 523. Note: Addgene's quality control sequencing has found a few mismatches in the plasmid insert, but they should not affect its ability to be used as a probe. | Vector Backbone:pCRII; Vector Types:Bacterial Expression; Bacterial Resistance:Ampicillin | 2026-08-15 01:17:38 | 0 |
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