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Plasmid Name Proper Citation Insert Name Organism Bacterial Resistance Defining Citation Comments Vector Backbone Description Relevant Mutation Authority Record Last Update Mentions Count
HL 2028
 
Resource Report
Resource Website
RRID:Addgene_61163 See comments None PMID:22833608 HL1745 + PLlacO-1::T710::yfp intergrated at galK+ ∆lacI Vector Backbone:N/A; Vector Types:Synthetic Biology; Bacterial Resistance:None Addgene 2026-09-26 02:35:52 0
HL 1745
 
Resource Report
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RRID:Addgene_61160 See comments None PMID:22833608 MG1655 + PLlacO-1::T710::cfp intergrated at intS Vector Backbone:N/A; Vector Types:Synthetic Biology; Bacterial Resistance:None Addgene 2026-09-26 02:35:52 0
HL 5220
 
Resource Report
Resource Website
RRID:Addgene_61164 See comments None PMID:22833608 MG1655 + PLlacO-1::T710::yfp intergrated at arpB + ∆lacI Vector Backbone:N/A; Vector Types:Synthetic Biology; Bacterial Resistance:None Addgene 2026-09-26 02:35:52 0
E. coli K-12 MG1655 RARE
 
Resource Report
Resource Website
1+ mentions
RRID:Addgene_61440 None PMID:25076127 This strain carries the DE3 lysogen. Backbone Size:4600000; Vector Backbone:E. coli K-12 MG1655 genome; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:35:56 8
ML14
 
Resource Report
Resource Website
RRID:Addgene_61911 none None PMID:21925267 Genotype = tyrA Precursor strain = C43(DE3) modified from the parent Escherichia coli C43(DE3) strain Selective amino acid labeling (and/or requirement) = (Tyr) Each target gene was deleted from the chromosome of C43 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:00 0
ML17
 
Resource Report
Resource Website
1+ mentions
RRID:Addgene_61912 none None PMID:21925267 Genotype = glnA Precursor strain = C43(DE3) modified from the parent Escherichia coli C43(DE3) strain Selective amino acid labeling (and/or requirement) = Gln Each target gene was deleted from the chromosome of C43 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:00 1
ML36
 
Resource Report
Resource Website
RRID:Addgene_61919 none None PMID:21925267 Genotype = cyo ilvE avtA aspC hisG metA Precursor strain = ML23 modified from the parent Escherichia coli C43(DE3) strain Selective amino acid labeling (and/or requirement) = (Ala#), Ile, Leu*, Tyr#, Val, His, Met *In the presence of 0.4-1 mM Tyr, tyrB is repressed and Leu is required for growth in minimal medium. This strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign genes [Methods 55, 370-378 (2011)]. #In the presence of 0.4-1 mM Tyr, tyrB is repressed and Tyr is required for growth in minimal medium. Under these conditions, this strain can also be used for selective labeling of the input Tyr and/or Ala label(s), although minor diffusion of the input label(s) can occur. Note that this strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign geness [Methods 55, 370-378 (2011)]. Each target gene was deleted from the chromosome of C43 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:01 0
ML24
 
Resource Report
Resource Website
RRID:Addgene_61915 none None PMID:21925267 Genotype = cyo ilvE avtA aspC hisG asnA Precursor strain = ML23 modified from the parent Escherichia coli C43(DE3) strain Selective amino acid labeling (and/or requirement) = (Ala#), Ile, Leu*, Tyr#, Val, His *In the presence of 0.4-1 mM Tyr, tyrB is repressed and Leu is required for growth in minimal medium. This strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign genes [Methods 55, 370-378 (2011)]. #In the presence of 0.4-1 mM Tyr, tyrB is repressed and Tyr is required for growth in minimal medium. Under these conditions, this strain can also be used for selective labeling of the input Tyr and/or Ala label(s), although minor diffusion of the input label(s) can occur. Note that this strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign geness [Methods 55, 370-378 (2011)]. Each target gene was deleted from the chromosome of C43 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:00 0
ML25
 
Resource Report
Resource Website
RRID:Addgene_61916 none None PMID:21925267 Genotype = cyo ilvE avtA aspC hisG asnA asnB Precursor strain = ML24 modified from the parent Escherichia coli C43(DE3) strain Selective amino acid labeling (and/or requirement) = (Ala#), Ile, Leu*, Tyr#, Val, His, Asn *In the presence of 0.4-1 mM Tyr, tyrB is repressed and Leu is required for growth in minimal medium. This strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign genes [Methods 55, 370-378 (2011)]. #In the presence of 0.4-1 mM Tyr, tyrB is repressed and Tyr is required for growth in minimal medium. Under these conditions, this strain can also be used for selective labeling of the input Tyr and/or Ala label(s), although minor diffusion of the input label(s) can occur. Note that this strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign geness [Methods 55, 370-378 (2011)]. Each target gene was deleted from the chromosome of C43 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:00 0
ML42
 
Resource Report
Resource Website
RRID:Addgene_61921 none None PMID:21925267 Genotype = cyo ilvE avtA aspC hisG argH metA lysA thrC asnB Precursor strain = ML41 modified from the parent Escherichia coli C43(DE3) strain Selective amino acid labeling (and/or requirement) = (Ala#), Ile, Leu*, Tyr#, Val, His, Arg, Met, Lys, Thr *In the presence of 0.4-1 mM Tyr, tyrB is repressed and Leu is required for growth in minimal medium. This strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign genes [Methods 55, 370-378 (2011)]. #In the presence of 0.4-1 mM Tyr, tyrB is repressed and Tyr is required for growth in minimal medium. Under these conditions, this strain can also be used for selective labeling of the input Tyr and/or Ala label(s), although minor diffusion of the input label(s) can occur. Note that this strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign geness [Methods 55, 370-378 (2011)]. Each target gene was deleted from the chromosome of C43 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:01 0
RF11
 
Resource Report
Resource Website
1+ mentions
RRID:Addgene_61961 none None PMID:26577727 Genotype = metA Precursor strain = C43(DE3) Selective amino acid labeling (and/or requirement) = Met Each target gene was deleted from the chromosome of C43 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. This work is supported in part by JSPS-NSF International Collaborations in Chemistry (ICC) research grant. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:01 1
RF2
 
Resource Report
Resource Website
1+ mentions
RRID:Addgene_62070 none None PMID:26577727 Genotype = thrC Precursor strain = BL21 CodonPlus (DE3)-RIL Selective amino acid labeling (and/or requirement) = Thr Each target gene was deleted from the chromosome of BL21 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. This work is supported in part by JSPS-NSF International Collaborations in Chemistry (ICC) research grant. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:02 1
RF12
 
Resource Report
Resource Website
1+ mentions
RRID:Addgene_62077 none None PMID:26577727 Genotype = trpA trpB Precursor strain = BL21 CodonPlus (DE3)-RIL Selective amino acid labeling (and/or requirement) = Trp## ##RF12 strain requires Trp for growth in M63 minimal medium. For effective Trp labeling of a recombinant protein, the presence of 0.4-1 mM Tyr in growth medium to repress the tyrB gene is recommended. This strategy can only be applicable for a short-term cultivation but not suitable for a long-term cultivation for heterologous expression of foreign genes [Methods 55, 370-378 (2011)]. Each target gene was deleted from the chromosome of BL21 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. This work is supported in part by JSPS-NSF International Collaborations in Chemistry (ICC) research grant. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:02 2
RF5
 
Resource Report
Resource Website
RRID:Addgene_62073 none None PMID:26577727 Genotype = aspC tyrB hisG Precursor strain = RF4 modified from the parent Escherichia coli BL21 CodonPlus (DE3)-RIL Selective amino acid labeling (and/or requirement) = Asp++++, Tyr, (Phe), His ++++RF4, RF5, and RF13 strains have knockouts in both aspC and tyrB genes and therefore require the presence of L-Asp (but not L-Glu) for growth in M63 minimal medium. These strains can be used for selective labeling of selected aromatic amino acid(s) such as Tyr (RF4, RF5, RF13) and/or Trp (RF13). We have NOT tested if these strains could also be used for selective Asp labeling studies (under investigation). Each target gene was deleted from the chromosome of BL21 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. This work is supported in part by JSPS-NSF International Collaborations in Chemistry (ICC) research grant. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:02 0
RF10
 
Resource Report
Resource Website
1+ mentions
RRID:Addgene_62076 none None PMID:26577727 Genotype = lysA Precursor strain = BL21 CodonPlus (DE3)-RIL Selective amino acid labeling (and/or requirement) = Lys Each target gene was deleted from the chromosome of BL21 (DE3) E. coli strain using λ-Red recombination system. Supplemental documents contain a list of PCR primers used for verification of each knocked-out gene as well as an image showing PCR results for this strain. This work is supported in part by JSPS-NSF International Collaborations in Chemistry (ICC) research grant. Vector Backbone:none; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:02 2
HL2483
 
Resource Report
Resource Website
RRID:Addgene_62819 see comments None PMID:26261213 MG1655 + lacIq intergrated at intS + Pcon::TetR inserted into the chromosome at galK + ΔglgCAP + ΔcsrB + ΔcsrC + ΔcsrD Vector Backbone:N/A; Vector Types:Synthetic Biology; Bacterial Resistance:None Addgene 2026-09-26 02:36:10 0
MG1655 Z1 malE clpA
 
Resource Report
Resource Website
RRID:Addgene_65918 MG1655 Z1 malE clpA None PMID:26900850 F-, lambda-, rph-1, laciq, PN25-tetR, SpR, malE-, clpA- Vector Backbone:n/a; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:41 0
MG1655 Z1 malE aat
 
Resource Report
Resource Website
RRID:Addgene_65917 MG1655 Z1 malE aat None PMID:26900850 F-, lambda-, rph-1, laciq, PN25-tetR, SpR, malE-, aat- Vector Backbone:n/a; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:36:41 0
Strain SIJ_488
 
Resource Report
Resource Website
1+ mentions
RRID:Addgene_68246 arabinose inducible lambda Red recombineering genes, rhamnose inducible flippase recombinase and m-toluic acid inducible I-SceI. None PMID:26643270 E. coli K-12 MG1655 with genomically integrated arabinose inducible lambda Red recombineering genes, rhamnose inducible flippase recombinase and m-toluic acid inducible I-SceI. Vector Backbone:N/A; Vector Types:; Bacterial Resistance:None Addgene 2026-09-26 02:37:01 1
HL 1951
 
Resource Report
Resource Website
RRID:Addgene_69773 None PMID:27084942 Vector Backbone:none; Vector Types:Synthetic Biology; Bacterial Resistance:None Addgene 2026-09-26 02:37:15 0

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