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Species: Danio rerio
Genetic Insert: ubiquitin:loxP-EGFP-loxP
Vector Backbone Description: Backbone Marker:Invitrogen; Backbone Size:2692; Vector Backbone:pENTR5' TOPO; Vector Types:Multisite Gateway 5' entry vector; Bacterial Resistance:Kanamycin
Defining Citation: PMID:21138979
Proper citation: RRID:Addgene_27322 Copy
Species: Danio rerio
Genetic Insert: Zinc finger array targeting dbh
Vector Backbone Description: Backbone Size:5493; Vector Backbone:MG414; Vector Types:Zebrafish Targeting; Bacterial Resistance:Kanamycin
Defining Citation: PMID:18657511
Comments: This plasmid encodes a zinc finger array targeting half of a target sequence in the zebrafish gene dbh (see below). Please note that this plasmid does NOT contain the dbh sequence.
Users must order the complementary plasmid dopamine beta hydroxylase (dbh)_R (OZ526) [Addgene plasmid 27201] in order to create a zinc finger nuclease (ZFN) pair to introduce targeted mutations into this specific zebrafish gene.
Users will also need to clone the zinc finger (ZF) insert of this plasmid into a zinc finger nuclease (ZFN) vector to express a FOKI fusion product. Examples of possible ZFN expression vectors that can be used are: pST1374 (Addgene plasmid 13426), pMLM290 (Addgene plasmid 21872), pMLM292 (Addgene plasmid 21873), pMLM800 (Addgene plasmid 27202) and pMLM802 (Addgene plasmid 27203).
This zinc finger array was tested for binding activity to the sequence 5'-TAGGATGGG-3' in a bacterial two hybrid assay, and resulted in 11.46 fold activation. However, this array has not yet been tested for activity as a zinc finger nuclease (i.e. for its ability to induce mutations at the intended locus).
Scientists using this zinc finger array in a publication should notify [email protected] and acknowledge NIH grant number R01 GM088040 in the publication.
Other Articles:
"Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays." Maeder ML et al. (Nat Protoc. 2009 Sept 17. 4(10):1471-1501. Pubmed ID: 19798082
"Targeted mutagenesis in zebrafish using customized zinc-finger nucleases." Foley JE et al. (Nat Protoc. 2009 Dec 3. 4(12):1855-1867. Pubmed ID: 20010934
Proper citation: RRID:Addgene_27200 Copy
Species: Danio rerio
Genetic Insert: Hoxc5a
Vector Backbone Description: Backbone Marker:Promega; Backbone Size:3000; Vector Backbone:pGEM-T; Vector Types:Bacterial Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:9425136
Comments: Addgene's quality control sequence has some mismatches with NCBI's sequence for this gene; the mismatches should not affect plasmid function.
Proper citation: RRID:Addgene_27539 Copy
Species: Danio rerio
Genetic Insert: Hoxc10a
Vector Backbone Description: Backbone Marker:Promega; Backbone Size:3000; Vector Backbone:pGEM-T; Vector Types:Bacterial Expression; Bacterial Resistance:Ampicillin
Defining Citation: PMID:9425136
Comments: Addgene's quality control sequence has some mismatches with NCBI's sequence for this gene; the mismatches should not affect plasmid function.
Proper citation: RRID:Addgene_27536 Copy
Species: Danio rerio
Genetic Insert: Hoxd3a
Vector Backbone Description: Backbone Size:3000; Vector Backbone:pBluescript; Vector Types:Cloning vector; Bacterial Resistance:Ampicillin
Defining Citation: PMID:9425135
Comments: Addgene's quality control sequence has some mismatches with NCBI's sequence for this gene; the mismatches should not affect plasmid function.
Proper citation: RRID:Addgene_27534 Copy
Species: Danio rerio
Genetic Insert: Hoxc3a
Vector Backbone Description: Backbone Marker:Promega; Backbone Size:3000; Vector Backbone:pGEM-T; Vector Types:Bacterial Expression; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27532 Copy
Species: Danio rerio
Genetic Insert: Hoxd12a
Vector Backbone Description: Backbone Marker:Promega; Backbone Size:3000; Vector Backbone:pGEM-T; Vector Types:Bacterial Expression; Bacterial Resistance:Ampicillin
Comments: Addgene's quality control sequence has some mismatches with NCBI's sequence for this gene; the mismatches should not affect plasmid function.
Proper citation: RRID:Addgene_27545 Copy
Species: Danio rerio
Genetic Insert: Hoxd10a
Vector Backbone Description: Backbone Marker:Promega; Backbone Size:3000; Vector Backbone:pGEM-T; Vector Types:Bacterial Expression; Bacterial Resistance:Ampicillin
Comments: Addgene's quality control sequence has some mismatches with NCBI sequence for this gene; the mismatches should not affect plasmid function.
Proper citation: RRID:Addgene_27543 Copy
Species: Danio rerio
Genetic Insert: Hoxc6a
Vector Backbone Description: Backbone Size:3000; Vector Backbone:pBluescript; Vector Types:Cloning vector; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27541 Copy
Species: Danio rerio
Genetic Insert: Hoxb1a
Vector Backbone Description: Backbone Marker:Stratagene; Backbone Size:3000; Vector Backbone:pBluescript II; Vector Types:Riboprobe synthesis; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27519 Copy
Species: Danio rerio
Genetic Insert: Hoxa5a
Vector Backbone Description: Backbone Marker:Stratagene; Backbone Size:3000; Vector Backbone:pBluescript II; Vector Types:Riboprobe synthesis; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27517 Copy
Species: Danio rerio
Genetic Insert: Hoxa1a
Vector Backbone Description: Backbone Marker:Stratagene; Backbone Size:3000; Vector Backbone:pBluescript; Vector Types:Riboprobe production; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27513 Copy
Species: Danio rerio
Genetic Insert: Hoxa2b
Vector Backbone Description: Backbone Marker:Stratagene; Backbone Size:3000; Vector Backbone:pBluescript SK-; Vector Types:Riboprobe synthesis; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27514 Copy
Species: Danio rerio
Genetic Insert: Hoxb9a
Vector Backbone Description: Backbone Size:3000; Vector Backbone:pBluescript; Vector Types:Cloning vector; Bacterial Resistance:Ampicillin
Defining Citation: PMID:9425136
Proper citation: RRID:Addgene_27529 Copy
Species: Danio rerio
Genetic Insert: Hoxb6b
Vector Backbone Description: Backbone Size:3000; Vector Backbone:pBluescript; Vector Types:Cloning vector; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27526 Copy
Species: Danio rerio
Genetic Insert: Hoxb6a
Vector Backbone Description: Backbone Size:3000; Vector Backbone:pBluescript; Vector Types:Cloning vector; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27525 Copy
Species: Danio rerio
Genetic Insert: Hoxb1b
Vector Backbone Description: Backbone Marker:Stratagene; Backbone Size:3000; Vector Backbone:pBluescript II; Vector Types:Riboprobe synthesis; Bacterial Resistance:Ampicillin
Proper citation: RRID:Addgene_27520 Copy
Species: Danio rerio
Genetic Insert: Zinc finger array targeting CACNA1D (2of2) or cav1.3b
Vector Backbone Description: Backbone Size:5493; Vector Backbone:MG414; Vector Types:Zebrafish Targeting; Bacterial Resistance:Kanamycin
Defining Citation: PMID:18657511
Comments: This plasmid encodes a zinc finger array targeting half of a target sequence in the zebrafish gene CACNA1D (2of2) or cav1.3b (see below). Please note that this plasmid does NOT contain the CACNA1D (2of2) or cav1.3b sequence.
Users must order the complementary plasmid CACNA1D (2of2) or cav1.3b_L (OZ547) [Addgene plasmid 28072] in order to create a zinc finger nuclease (ZFN) pair to introduce targeted mutations into this specific zebrafish gene.
Users will also need to clone the zinc finger (ZF) insert of this plasmid into a zinc finger nuclease (ZFN) vector to express a FOKI fusion product. Examples of possible ZFN expression vectors that can be used are: pST1374 (Addgene plasmid 13426), pMLM290 (Addgene plasmid 21872), pMLM292 (Addgene plasmid 21873), pMLM800 (Addgene plasmid 27202) and pMLM802 (Addgene plasmid 27203).
This zinc finger array was tested for binding activity to the sequence 5'-GCGGCCGAA-3' in a bacterial two hybrid assay, and resulted in 5.30 fold activation. However, this array has not yet been tested for activity as a zinc finger nuclease (i.e. for its ability to induce mutations at the intended locus).
Scientists using this zinc finger array in a publication should notify [email protected] and acknowledge NIH grant number R01 GM088040 in the publication.
Other Articles: "Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays." Maeder ML et al. (Nat Protoc. 2009 Sept 17. 4(10):1471-1501. Pubmed ID: 19798082
"Targeted mutagenesis in zebrafish using customized zinc-finger nucleases." Foley JE et al. (Nat Protoc. 2009 Dec 3. 4(12):1855-1867. Pubmed ID: 20010934
Proper citation: RRID:Addgene_28073 Copy
Species: Danio rerio
Genetic Insert: Zinc finger array targeting histamine receptor H3 (hrh3)
Vector Backbone Description: Backbone Size:5493; Vector Backbone:MG414; Vector Types:Zebrafish Targeting; Bacterial Resistance:Kanamycin
Defining Citation: PMID:18657511
Comments: This plasmid encodes a zinc finger array targeting half of a target sequence in the zebrafish gene histamine receptor H3 (hrh3) (see below). Please note that this plasmid does NOT contain the histamine receptor H3 (hrh3) sequence.
Users must order the complementary plasmid histamine receptor H3 (hrh3)_R (OZ550) [Addgene plasmid 28075] in order to create a zinc finger nuclease (ZFN) pair to introduce targeted mutations into this specific zebrafish gene.
Users will also need to clone the zinc finger (ZF) insert of this plasmid into a zinc finger nuclease (ZFN) vector to express a FOKI fusion product. Examples of possible ZFN expression vectors that can be used are: pST1374 (Addgene plasmid 13426), pMLM290 (Addgene plasmid 21872), pMLM292 (Addgene plasmid 21873), pMLM800 (Addgene plasmid 27202) and pMLM802 (Addgene plasmid 27203).
This zinc finger array was tested for binding activity to the sequence 5'-TCCGTGGCG-3' in a bacterial two hybrid assay, and resulted in 5.61 fold activation. However, this array has not yet been tested for activity as a zinc finger nuclease (i.e. for its ability to induce mutations at the intended locus).
Scientists using this zinc finger array in a publication should notify [email protected] and acknowledge NIH grant number R01 GM088040 in the publication.
Other Articles: "Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays." Maeder ML et al. (Nat Protoc. 2009 Sept 17. 4(10):1471-1501. Pubmed ID: 19798082
"Targeted mutagenesis in zebrafish using customized zinc-finger nucleases." Foley JE et al. (Nat Protoc. 2009 Dec 3. 4(12):1855-1867. Pubmed ID: 20010934
Proper citation: RRID:Addgene_28074 Copy
Species: Danio rerio
Genetic Insert: Zinc finger array targeting Swachmann-Bodian-Diamond Syndrome Gene, sbds
Vector Backbone Description: Backbone Size:5493; Vector Backbone:MG414; Vector Types:Zebrafish Targeting; Bacterial Resistance:Kanamycin
Defining Citation: PMID:18657511
Comments: This plasmid encodes a zinc finger array targeting half of a target sequence in the zebrafish gene Swachmann-Bodian-Diamond Syndrome Gene, sbds (see below). Please note that this plasmid does NOT contain the sbds sequence.
Users must order the complementary plasmid Swachmann-Bodian-Diamond Syndrome Gene, sbds_L (OZ545) [Addgene plasmid 28070] in order to create a zinc finger nuclease (ZFN) pair to introduce targeted mutations into this specific zebrafish gene.
Users will also need to clone the zinc finger (ZF) insert of this plasmid into a zinc finger nuclease (ZFN) vector to express a FOKI fusion product. Examples of possible ZFN expression vectors that can be used are: pST1374 (Addgene plasmid 13426), pMLM290 (Addgene plasmid 21872), pMLM292 (Addgene plasmid 21873), pMLM800 (Addgene plasmid 27202) and pMLM802 (Addgene plasmid 27203).
This zinc finger array was tested for binding activity to the sequence 5'-GATGAAGAA-3' in a bacterial two hybrid assay, and resulted in 6.00 fold activation. However, this array has not yet been tested for activity as a zinc finger nuclease (i.e. for its ability to induce mutations at the intended locus).
Scientists using this zinc finger array in a publication should notify [email protected] and acknowledge NIH grant number R01 GM088040 in the publication.
Other Articles: "Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays." Maeder ML et al. (Nat Protoc. 2009 Sept 17. 4(10):1471-1501. Pubmed ID: 19798082
"Targeted mutagenesis in zebrafish using customized zinc-finger nucleases." Foley JE et al. (Nat Protoc. 2009 Dec 3. 4(12):1855-1867. Pubmed ID: 20010934
Proper citation: RRID:Addgene_28071 Copy
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