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https://www.keyence.co.jp/products/microscope/fluorescence-microscope/bz-9000/models/bz-9000/

Microscope system performs fluorescence, bright-field and phase-contrast imaging on various specimen holders. The system allows users to switch between four fluorescent channels, automatically adjusting the filter and exposure time while preserving the longevity of the specimen.

Proper citation: BZ 9000 Fluorescence Microscope (RRID:SCR_015486) Copy   

•   Source: SciCrunch Registry

http://statcheck.io/

Statistical checking software for psychology manuscripts. Users can upload APA-formatted PDF or HTML files to find errors in statistical reporting.

Proper citation: StatCheck (RRID:SCR_015487) Copy   

•   Source: SciCrunch Registry

http://ilastik.org/

Tool for interactive image classification, segmentation and analysis, built as a modular software framework, which currently has workflows for automated (supervised) pixel- and object-level classification, automated and semi-automated object tracking, semi-automated segmentation and object counting without detection.

Proper citation: Ilastik (RRID:SCR_015246) Copy   

•   Source: SciCrunch Registry

http://spectrumlabs.com/

Commercial organization which supplies products for bioseparation and cell line management.

Proper citation: Spectrum Labs (RRID:SCR_015488) Copy   

•   Source: SciCrunch Registry

http://depts.washington.edu/diabetes/

University-affiliated center to support both basic and clinical research in diabetes and related metabolic disorders with the ultimate purpose of translating findings into opportunities to prevent these diseases and to improve clinical care and outcomes.

Proper citation: University of Washington Diabetes Research Center (RRID:SCR_015126) Copy   

•   Source: SciCrunch Registry

http://tlife.fudan.edu.cn/ltr_finder/

Web software capable of scanning large-scale sequences for full-length LTR retrotranspsons., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: LTR_Finder (RRID:SCR_015247) Copy   

•   Source: SciCrunch Registry

https://www.marshallbio.com/

Commercial provider of purpose-bred animals for biomedical research. They provide dogs, pigs, ferrets, mice, and guinea pigs in physically and psychologically healthy condition.

Proper citation: Marshall BioResources (RRID:SCR_015489) Copy   

•   Source: SciCrunch Registry

https://play.google.com/store/apps/details?id=com.compphys.atomify&hl=no

Mobile simulation app for visualizing molecular interactions in liquids, solids and gases. The simulations are performed with the molecular dynamics code LAMMPS.

Proper citation: Atomify LAMMPS (RRID:SCR_015240) Copy   

•   Source: SciCrunch Registry

https://www.encodeproject.org/

Consortium to build comprehensive parts list of functional elements in human genome. This includes elements that act at protein and RNA levels, and regulatory elements that control cells and circumstances in which gene is active. Data from 2012-present.

Proper citation: Encode (RRID:SCR_015482) Copy   

•   Source: SciCrunch Registry

http://mbm.cs.uga.edu/mouse/transcriptome_architecture/

Image collection of transcriptome architecture of adult mouse brain revealed by sparse coding of genome-wide in situ hybridization images.

Proper citation: Transcriptome architecture of adult mouse brain (RRID:SCR_015483) Copy   

•   Source: SciCrunch Registry

https://github.com/johnlees/seer

Sequence element enrichment analysis tool to perform pan-genome-wide association studies in bacteria.

Proper citation: SEER (RRID:SCR_015499) Copy   

•   Source: SciCrunch Registry

http://mmpc.med.umich.edu/

Research center which aims to contribute to a national database of metabolic phenotyping data in wild-type mouse strains and a broad range of mouse models relevant to the pathogenesis and treatment of diabetes, obesity and associated metabolic disorders. It also aims to foster continued technical development, refinement of assay sensitivity and specificity, data reproducibility, and transmission of best research practices within the areas of fundamental and applied diabetes and obesity research.

Proper citation: MMPC-University of Michigan Medical School (RRID:SCR_015373) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GEXO

An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.

Proper citation: Gene Expression Ontology (RRID:SCR_010326) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GCO

Ontology to define the abstract division of the total genetic information of an organism by its physical separation into different components, thereby providing a high level reference point to which more specific descriptions of the characteristics of these components can be linked.

Proper citation: Genome Component Ontology (RRID:SCR_010330) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SIO

Ontology that provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.

Proper citation: Semanticscience Integrated Ontology (RRID:SCR_010427) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/UO

Metrical units ontology for use in conjunction with PATO

Proper citation: Units of Measurement Ontology (RRID:SCR_010442) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NMR

Metabolomics Standards Initiative-sanctioned ontology, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with meaningful raw data descriptors.

Proper citation: NMR-Instrument Component of Metabolomics Investigations Ontology (RRID:SCR_010367) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/HOM

Ontology that represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.

Proper citation: Ontology of Homology and Related Concepts in Biology (RRID:SCR_010400) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/QUDT

Collection of ontologies that define the base classes properties, and restrictions used for modeling physical quantities, units of measure, and their dimensions in various measurement systems. The goal of the QUDT ontology is to provide a unified model of, measurable quantities, units for measuring different kinds of quantities, the numerical values of quantities in different units of measure and the data structures and data types used to store and manipulate these objects in software. This OWL schema is a foundation for a basic treatment of units.

Proper citation: QUDT (RRID:SCR_010416) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICECI

A system of classifications to enable systematic description of how injuries occur. It is designed especially to assist injury prevention. It was originally designed for use in settings in which information is recorded in a way that allows statistical reporting--for example, injury surveillance based on collection of information about cases attending a sample of hospital emergency departments. It has also been found useful for other purposes. For example, it has been used as a reference classification during revision of another classification, to record risk-factor exposure of children in a cohort study, as the basis for special-purpose classifications and in a growing number of other ways.

Proper citation: International Classification of External Causes of Injuries (RRID:SCR_010348) Copy   

•   Source: SciCrunch Registry