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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of Pennsylvania Diabetes Research Center Resource Report Resource Website 1+ mentions |
University of Pennsylvania Diabetes Research Center (RRID:SCR_015732) | DRC | data or information resource, portal, disease-related portal, topical portal | NIDDK center that serves diabetes-oriented investigators from University of Pennsylvania as well as additional institutions from the mid-Atlantic region. The Penn DRC represents many basic science and clinical departments at Penn and the other institutions, and supports research in diabetes and obesity via Scientific Cores, a Pilot and Feasibility Grant Program, and a series of seminars, retreats, and other academic enrichment activities. | diabetes, research, univeristy of pennsylvania, upenn, obesity, metabolic disorder | is listed by: NIDDK Information Network (dkNET) | NIDDK P30DK19525 | Available to affiliated researchers | http://www.med.upenn.edu/, https://diabetescenters.org/ | SCR_015732 | 2026-08-08 12:00:40 | 1 | |||||||
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IITC Life Sciences: Rotarod Test Resource Report Resource Website 1+ mentions |
IITC Life Sciences: Rotarod Test (RRID:SCR_015698) | instrument resource | Kit for assessing motor function and endurance in mice and rats. IITC’s Rotarod Test is capable of having up to five mice or rats tested at a time standard. | motor function, endurance, mouse, rat, drug resistance, material resource, hardware, instrument, equipment, USEDit |
is listed by: USEDit is related to: ANY-maze |
Commercially available | https://drive.google.com/file/d/18ukwQxS-8nMcPfZRWuBiBW8w-r429oR3/view?usp=drivesdk | https://www.iitcinc.com/pdf/Rotarod.pdf | SCR_015698 | IITC Rotarod Test, IITC Rotarod Treadmill, Rotarod Treadmill for mice and rats, IITC's Rotarod Test, Rotarod Test Rats and Mice, IITC Life Sciences Rotarod Treadmill | 2026-08-08 12:00:39 | 5 | |||||||
|
Functional Network Connectivity (FNC) Resource Report Resource Website 10+ mentions |
Functional Network Connectivity (FNC) (RRID:SCR_015731) | FNC | software toolkit, software resource, software application, data analysis software, data processing software | Software toolbox which finds and displays temporal relations amongst components. This can help determine causal relations in the brain. | fmri, temporal relation, causal relation, neural connectivity, | is used by: MATLAB | PMID:18082428 | Free, Available for download, Tutorial available | http://mialab.mrn.org/software/fnc/index.html | SCR_015731 | FNC Toolbox, GIFT toolbox, Functional Network Connectivity Toolbox | 2026-08-08 12:00:25 | 26 | ||||||
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Oncotopix Discovery Resource Report Resource Website 1+ mentions |
Oncotopix Discovery (RRID:SCR_015690) | software resource | Oncotopix Discovery is a comprehensive solution powered for whole slide image analysis of tissue sections, TMA slides across any image analysis application. Simple to program also for scientists without an IT background. | SCR_015690 | 2026-08-08 12:00:42 | 1 | |||||||||||||
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R package: LMERConvenienceFunctions Resource Report Resource Website 1+ mentions |
R package: LMERConvenienceFunctions (RRID:SCR_015658) | software toolkit, software resource, software application, data analysis software, data visualization software, data processing software | Software package that performs backward selection of fixed effects, forward fitting of the random effects, and post-hoc analysis using parallel capabilities. Other functionality includes the computation of ANOVAs with upper- or lower-bound p-values and R-squared values for each model term, model criticism plots, data trimming on model residuals, and data visualization. | r, fixed effect, random effect, anova, p-value, r-squared, data trimming, data visualization | is listed by: CRAN | Free, Available for download | SCR_015658 | LMERConvenienceFunctions, Package ‘LMERConvenienceFunctions’, LMERConvenienceFunctions: Model Selection and Post-hoc Analysis for (G)LMER Models | 2026-08-08 12:00:25 | 5 | |||||||||
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R package: lattice Resource Report Resource Website 10+ mentions |
R package: lattice (RRID:SCR_015662) | software resource, software application, data visualization software, data processing software | Data visualization software inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs as well as most nonstandard requirements. | r, r package, multivariate data, data visualization | is listed by: CRAN | Free, Available for download | SCR_015662 | lattice, lattice: Trellis Graphics for R, Package ‘lattice’ | 2026-08-08 12:00:25 | 13 | |||||||||
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GeneMarker Resource Report Resource Website 1000+ mentions |
GeneMarker (RRID:SCR_015661) | software resource, software application, data analysis software, data processing software | Genotype analysis software which enhances the speed, accuracy, and ease of analysis. The software is an alternative to Applied BioSystems Genotyper®, GeneScan®, and other genotype analysis software. | genotype, gene analysis | is listed by: SoftCite | Commercially available, Trial available, Runs on Mac OS, Runs on Windows, Runs on Linux | SCR_015661 | GeneMarker: The Biologist Friendly Software | 2026-08-08 12:00:42 | 1577 | |||||||||
|
LabeledIn Resource Report Resource Website 1+ mentions |
LabeledIn (RRID:SCR_015667) | database, data or information resource, software resource | Database of annotations of drug indications in FDA drug labels. LabeledIn contains an expert curated set of indications and a crowdsourced set of indications. | drug, annotation, fda, fda drug label | Intramural Research Program of the NIH – National Library of Medicine ; National Key Technology R&D Program of China 2013BAI06B01; Fundamental Research Funds for the Central Universities 13R0101; MITRE Internal Research and Development Program |
PMID:25220766 PMID:25797061 |
Public, Freely available, Free, Available for download | SCR_015667 | 2026-08-08 12:00:39 | 2 | |||||||||
|
DISEASES Resource Report Resource Website 500+ mentions |
DISEASES (RRID:SCR_015664) | database, data or information resource | Database that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. It also assigns confidence scores that facilitate comparison of the different types and sources of evidence. | disease, gene, disease-gene association, text-mining, , bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools |
Novo Nordisk Foundation Center for Protein Research NNF14CC0001; European Union Seventh Framework Programme n259348 |
PMID:25484339 | biotools:diseases | https://bio.tools/diseases | SCR_015664 | 2026-08-08 12:00:42 | 655 | |||||||
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TISSUES Resource Report Resource Website 10+ mentions |
TISSUES (RRID:SCR_015665) | web application, database, data or information resource, software resource | Database that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. It maps all evidence to common protein identifiers and Brenda Tissue Ontology terms, and further unifies it by assigning confidence scores that facilitate comparison of the different types and sources of evidence. | tissue expression, proteomic, transcriptomic, text-mining, brenda tissue ontology, protein identifier, bio.tools |
uses: BRENDA Tissue and Enzyme Source Ontology is listed by: Debian is listed by: bio.tools |
Novo Nordisk Foundation NNF14CC0001; NCI U54 CA189205-01; CSIRO’s OCE Science Leader program |
PMID:26157623 | Freely available, Free, Available for download | biotools:tissues | https://bio.tools/tissues | SCR_015665 | TISSUES: Tissue Expression Database, Tissue Expression Database | 2026-08-08 12:00:25 | 45 | |||||
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MIDAS Resource Report Resource Website 1+ mentions |
MIDAS (RRID:SCR_015704) | image processing software, image analysis software, software resource, software application, data processing software | Software for processing, display, and analysis of magnetic resonance spectroscopic imaging data. MIDAS supports a "whole-brain" MRSI acquisition method that has been implemented on MRI systems from three major manufacturers., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | mrsi, magnetic resonance spectroscopic imaging, processing software, brain imaging | NIBIB R01EB00822; NIBIB R01EB016064 |
PMID:16763967 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015704 | MIDAS Software, Metabolite Imaging and Data Analysis System, MIDAS: Metabolite Imaging and Data Analysis System | 2026-08-08 12:00:25 | 1 | ||||||||
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Evolutionary Rate Covariation Resource Report Resource Website 1+ mentions |
Evolutionary Rate Covariation (RRID:SCR_015669) | ERC | web application, software resource, software application, data analysis software, data processing software | Web-based statistical application that measures correlated rates across a phylogeny, allowing for extraction of genes with similar evolutionary histories. It can identify new functional connections between genes. | statistical software, correlation, phylogeny, gene extraction, genetic evolutionary history, covariation, group analysis | PMID:25679399 PMID:24453993 PMID:22287101 |
Freely available, Free, Available for download | SCR_015669 | ERC: Evolutionary Rate Covariation, Evolutionary Rate Covariation (ERC) Analysis, Evolutionary Rate Covariation (ERC) | 2026-08-08 12:00:42 | 2 | ||||||||
|
Connectivity Map 02 Resource Report Resource Website 100+ mentions |
Connectivity Map 02 (RRID:SCR_015674) | cmap | web application, database, data or information resource, software resource | Collection of genome-wide transcriptional expression data from cultured human cells treated with bioactive small molecules and simple pattern-matching algorithms. camp aims to enable the discovery of functional connections between drugs, genes and diseases through the transitory feature of common gene-expression changes., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription, expression, gene, drug, disease pattern-matching algorithm, FASEB list |
has parent organization: Broad Institute has parent organization: Broad Institute of MIT and Harvard |
PMID:17008526 | THIS RESOURCE IS NO LONGER IN SERVICE | https://www.broadinstitute.org/cmap_build01 | SCR_015674 | Broad Institute Connectivity Map 02 Build, cmap | 2026-08-08 12:00:42 | 243 | ||||||
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Mendeley Data Resource Report Resource Website 100+ mentions |
Mendeley Data (RRID:SCR_015671) | storage service resource, data or information resource, data repository, service resource | Cloud-based data repository for storing, publishing and accessing scientific data. Mendeley Data creates a permanent location and issues Force 11 compliant citations for uploaded data. | data repository, published data, citation, force 11, doi, dans, dans (data archiving and networking services) |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: Mendeley works with: DANS |
Free, Public, The research community can contribute to this resource, Account required | DOI:10.25504/FAIRsharing.3epmpp, DOI:10.17616/R3DD11, r3d100011868, DOI:10.17632 | https://doi.org/10.17616/R3DD11, https://doi.org/10.17616/r3dd11, https://doi.org/10.17632/, https://dx.doi.org/10.17632/, https://fairsharing.org/10.25504/FAIRsharing.3epmpp, https://doi.org/10.17616/R3DD11 | SCR_015671 | 2026-08-08 12:00:25 | 239 | ||||||||
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TurboFIRE Resource Report Resource Website 1+ mentions |
TurboFIRE (RRID:SCR_015518) | software resource, software application, data analysis software, data processing software | Real-time task-based and resting-state fMRI analysis software. This software is developed and distributed to researchers by NeurInsight LLC. | fmri, fmri analysis, resting-state | Available to affiliated researchers | SCR_015518 | 2026-08-08 12:00:37 | 4 | |||||||||||
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SpineML_2_BRAHMS Resource Report Resource Website 1+ mentions |
SpineML_2_BRAHMS (RRID:SCR_015640) | simulation software, software resource, software application, source code | Simulation software which can execute neural network models specified in the SpineML format (an extension of the INCF's NineML). It is used as the canonical simulator backend by SpineCreator and translates the SpineML specification of the model into object code and a SystemML specification of the network. | spineml, brahms, spinecreator, neural network, modeling software |
uses: SpineML uses: BRAHMS |
BIMPA EP/G015627/1 | PMID:24253973 | Free, Available for download | SCR_015640 | 2026-08-08 12:00:41 | 2 | ||||||||
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Neurocare: Neuroconn DC-Stimulator Plus Resource Report Resource Website 1+ mentions |
Neurocare: Neuroconn DC-Stimulator Plus (RRID:SCR_015520) | tDCS | instrument resource | Device for administering transcranial electrical stimulation. It has applications in cranial electrotherapy that provides a weak direct current for non-invasive Interventional Neurophysiology. | commercial resource, material resource, hardware, transcranial electrical stimulation, cranial electrotherapy, tES, instrument, equipment, USEDit | PMID:26889687 | Commercially available, Available for purchase | https://drive.google.com/file/d/1SPn3_PCUego80oGB2-uPK7aUTmv62wry/view?usp=drivesdk | https://info.neurocaregroup.com/hubfs/neuroCare_May_2021/pdf/pb_dcsp_en.pdf | SCR_015520 | 2026-08-08 12:00:24 | 7 | |||||||
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DTI FiberTrak MR Clinical application Resource Report Resource Website |
DTI FiberTrak MR Clinical application (RRID:SCR_015521) | image analysis software, resource, software resource, software application, data analysis software, data processing software | Instrument and software tool used to visualize, trace, analyze, and process white matter fiber tracts of Diffusion Tensor Imaging (DTI) data in real-time. It supports pre-operative surgical planning, post-surgery evaluation, and general evaluation of fiber tracts around tumors and lesions in connection with functional areas. | white matter fiber tract, dti analysis, diffusion tensor imaging analysis, surgical preparation, surgical evaluation, hardware, instrument, equipment | Commercially available | SCR_015521 | Philips DTI FiberTrak, DTI FiberTrak | 2026-08-08 12:00:37 | 0 | ||||||||||
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BRAHMS Resource Report Resource Website 10+ mentions |
BRAHMS (RRID:SCR_015642) | software resource | Simulation software that runs network simulations where the network is specified in its own format called SystemML. The components of the network can be implemented in C, C++, Python or Matlab and are used in SpineML_2_BRAHMS to provide a simulation back-end for SpineML models. | neural network, simulation, modeling software, spineml, systemml, c, c++, python, matlab | is used by: SpineML_2_BRAHMS | DOI:10.1016/j.aei.2009.08.002 | Free, Available for download | http://brahms.sourceforge.net/home/ | SCR_015642 | 2026-08-08 12:00:24 | 19 | ||||||||
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Phobius Resource Report Resource Website 500+ mentions |
Phobius (RRID:SCR_015643) | production service resource, web service, software resource, data access protocol, analysis service resource, service resource | Web application for combined transmembrane topology and signal peptide prediction. Used for whole genome annotation of signal peptides and transmembrane regions. Predictor is based on hidden Markov model (HMM) that models different sequence regions of signal peptide and different regions of transmembrane protein in series of interconnected states. | Signal peptide prediction, whole genome annotation, transmembrane region, protein prediction, transmembrane topology, signal peptide, fasta, hidden markov model | is listed by: SoftCite | PMID:15111065 PMID:30976793 |
Freely Available, Free, Available for download | SCR_018767 | http://phobius.binf.ku.dk/, https://www.ebi.ac.uk/Tools/pfa/phobius/ | SCR_015643 | PHOBIUS | 2026-08-08 12:00:38 | 553 |
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