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https://cran.r-project.org/web/packages/fitbitScraper/index.html

Software R package to scrape data from Fitbit to generate graphs.

Proper citation: fitbitscraper (RRID:SCR_024273) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/fitdistrplus/index.html

Software R package extends fitdistr function to help the fit of parametric distribution to non-censored or censored data.

Proper citation: fitdistrplus (RRID:SCR_024274) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/forecast/index.html

Software R package for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling.

Proper citation: forecast (RRID:SCR_024277) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/itertools/index.html

Software R package as implementation of LexRank algorithm. Used for computing sentence importance based on concept of eigenvector centrality in graph representation of sentences.

Proper citation: lexrankr (RRID:SCR_024278) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/DT/index.html

Software R package for data objects in R to render as HTML tables using JavaScript library DataTables. DataTables library has been included in this R package.

Proper citation: DT (RRID:SCR_024270) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/sjPlot/index.html

Software R package as collection of plotting and table output functions for data visualization. Results of various statistical analyses that are commonly used in social sciences can be visualized using this package, including simple and cross tabulated frequencies, histograms, box plots, generalized linear models, mixed effects models, principal component analysis and correlation matrices, cluster analyses, scatter plots, stacked scales, effects plots of regression models including interaction terms. This package supports labelled data.

Proper citation: sjplot (RRID:SCR_024307) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/package=waveslim

Software R package for basic wavelet routines for time series 1D, image 2D and array 3D analysis.

Proper citation: waveslim (RRID:SCR_024308) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/NMF/index.html

Software R package provides framework to perform Non-negative Matrix Factorization.Used for nonnegative matrix factorization.Implements set of already published algorithms and seeding methods, and provides framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.

Proper citation: nmf (RRID:SCR_024284) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/package=pROC

Software R tools for visualizing, smoothing and comparing receiver operating characteristic. Partial area under curve AUC can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.

Proper citation: proc (RRID:SCR_024286) Copy   

•   Source: SciCrunch Registry

https://qtltools.github.io/qtltools/

Software tool set for molecular Quantitative Trait Loci discovery and analysis. Allows to go from raw sequence data to collection of molecular Quantitative Trait Loci in few easy-to-perform steps.

Proper citation: qtltools (RRID:SCR_024200) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/package=psyphy

Software R package useful in analyzing data from psychophysical experiments.Includes functions for calculating d' from several different experimental designs, links for m-alternative forced-choice data to be used with binomial family in glm and self-Start functions for estimating gamma values for CRT screen calibrations.

Proper citation: psyphy (RRID:SCR_024289) Copy   

•   Source: SciCrunch Registry

https://gitlab.com/RKIBioinformaticsPipelines/QCumber

Software for quality control, quality trimming, adapter removal and sequence content check of NGS data.

Proper citation: qcumber (RRID:SCR_024203) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/Mediana/index.html

Software R package for clinical trial simulations based on Clinical Scenario Evaluation approach. The package supports broad class of data models, analysis strategies and commonly used evaluation criteria.

Proper citation: mediana (RRID:SCR_024281) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/itertools/index.html

Software R package for creating iterators, many patterned after functions in the Python itertools module, and others patterned after functions in the 'snow' package.

Proper citation: itertools (RRID:SCR_024282) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/OptimalCutpoints/index.html

Software R package to compute optimal cutpoints for diagnostic tests or continuous markers.Used for selecting optimal cutoffs, analysis and diagnostic test accuracy measures.

Proper citation: optimalcutpoints (RRID:SCR_024283) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/RBGL/

Software R package as interface to the graph algorithms contained in the BOOST library.

Proper citation: rbgl (RRID:SCR_024251) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/release/bioc/html/pcaMethods.html

Software R package providing PCA methods for incomplete data. Provides Bayesian PCA, Probabilistic PCA, Nipals PCA, Inverse Non-Linear PCA and conventional SVD PCA. Cluster based method for missing value estimation is included for comparison. BPCA, PPCA and NipalsPCA may be used to perform PCA on incomplete data as well as for accurate missing value estimation.

Proper citation: pcaMethods (RRID:SCR_024252) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/Rcpi/

Software R package as molecular informatics toolkit with integration of bioinformatics and chemoinformatics tools for drug discovery.

Proper citation: rcpi (RRID:SCR_024253) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/release/bioc/html/rgsepd.html

Software R package to help disambiguate transcriptome samples by automating differential expression, then gene set enrichment, and finally N-dimensional projection to quantify in which ways each sample is like either treatment group.

Proper citation: rgsepd (RRID:SCR_024256) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/makecdfenv/

Software R package has two functions. One reads Affymetrix chip description file and creates hash table environment containing location/probe set membership mapping. The other creates package that automatically loads that environment.

Proper citation: makecdfenv (RRID:SCR_024248) Copy   

•   Source: SciCrunch Registry