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https://code.google.com/p/netcoffee/

A fast and accurate algorithm which allows to find a global alignment of multiple protein-protein interaction networks.

Proper citation: NetCoffee (RRID:SCR_012095) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/qsimscan/

A flexible open source protein similarity search software tool which provides a significant gain in speed compared to BLASTP at the price of controlled sensitivity loss.

Proper citation: PSimScan (RRID:SCR_012094) Copy   

•   Source: SciCrunch Registry

http://tfclass.bioinf.med.uni-goettingen.de/tfclass

Database that classifies human transcription factors based on the characteristics of their DNA-binding domains. It comprises six levels (superclasses, classes, families, subfamilies, genera and factor species), two of which are optional (subfamilies and factor species). The full classification can also be obtained as html document and as ontology in obo-format., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: TFClass (RRID:SCR_012018) Copy   

•   Source: SciCrunch Registry

http://www.few.vu.nl/~mavdwiel/ShrinkBayes.html

Software for detecting differential features across the entire spectrum, including the lower counts.

Proper citation: ShrinkSeq (RRID:SCR_012022) Copy   

•   Source: SciCrunch Registry

http://genomejack.net/

A genome browser specialized in next-generation sequencing data.

Proper citation: GenomeJack (RRID:SCR_012026) Copy   

•   Source: SciCrunch Registry

http://goldenhelix.com/

Specializes in sequence and array-based SNP and copy number analysis, genetic association software, and analytic services. Their technologies empower scientists to determine the genetic causes of disease, transform drug discovery, develop genetic diagnostics, and advance the quest for personalized medicine.

Proper citation: Golden Helix Incorporated (RRID:SCR_012191) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/glycanbuilder/

An intuitive and flexible software tool for building and displaying glycan structures.

Proper citation: GlycanBuilder (RRID:SCR_012123) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/glycresoft/

A software package for automated recognition of glycans from LC/MS data.

Proper citation: GlycReSoft (RRID:SCR_012122) Copy   

•   Source: SciCrunch Registry

http://mohfw.nic.in/

Proper citation: Ministry of Health and Family Welfare - Government of India (RRID:SCR_012124) Copy   

•   Source: SciCrunch Registry

http://www.uwa.edu.au/

Public research university in the Australian state of Western Australia. The university's main campus is in Perth, the state capital, with a secondary campus in Albany and various other facilities elsewhere.

Proper citation: University of Western Australia; Perth; Australia (RRID:SCR_012342) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/bioseek

BioSeek is a drug discovery services company that applies human primary cell assays and predictive disease models to the discovery and development of human therapeutics and safer chemicals. BioSeek improves the success rate of drug discovery and development by integrating human biology from the earliest stages of drug discovery onward through its unique BioMAP??????? platform. Our mission is to accelerate drug compound validation and enable our clients to take safer and more effective products into the market.

Proper citation: BioSeek (RRID:SCR_012224) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ngopt/

Software that produces high quality microbial genome assemblies on a laptop computer without any parameter tuning. A5-miseq does this by automating the process of adapter trimming, quality filtering, error correction, contig and scaffold generation, and detection of misassemblies. Unlike the original A5 pipeline, A5-miseq can use long reads from the Illumina MiSeq, use read pairing information during contig generation, and includes several improvements to read trimming.

Proper citation: A5-miseq (RRID:SCR_012148) Copy   

•   Source: SciCrunch Registry

http://www.iitcinc.com/Plantar.html

The IITC Plantar Analgesia Meter for thermal paw can be used on 12 mice, 6 rats and other animals (cats, rabbits) unrestrained when testing for narcotic drugs. Experiments are easy to perform, simply slide the test head under test subject, align the heat source via our exclusive guide light (idle state) by the attached, adjustable, angled mirror on test head to test subject and perform tests.

Proper citation: IITC Life Sciences: Plantar Test Apparatus (RRID:SCR_012152) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/applied-biosciences-llc

Applied Biosciences is a small miority owned LLC. We specialize in hormone assays from the very small (30 g to the 5000 kg elephant) to the very large. We have a vast experience of knowledge in the endocrine field. Our experts are board certified in animal pharmacology as well as theriogenology. Combined with our Endocrinologist, there is over 75 years of experience with animal medicine and more specficially endocrinology of many animal species.

Proper citation: Applied Biosciences (RRID:SCR_012275) Copy   

•   Source: SciCrunch Registry

http://www.med-associates.com/product/med-pc-v-software-suite/

Customizable software program for behavioral testing. Users logically order simple text commands to direct experimental work flow and data collection, providing control of chamber components, stimuli, reinforcement mechanisms, data variables, and arrays. Standard pre-written procedures and custom coding solutions are available for purchase.

Proper citation: MED PC (RRID:SCR_012156) Copy   

•   Source: SciCrunch Registry

http://www.niehs.nih.gov/research/supported/srp/funding/index.cfm

http://www.niehs.nih.gov/research/supported/srp/funding/index.cfm

Proper citation: Superfund basic research program (RRID:SCR_012313) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/firefly-bioworks-inc

Firefly BioWorks, Inc. (Cambridge, MA) provides FirePlex????????????? miRSelect, a platform for targeted microRNA profiling of diverse biological samples. The FirePlex????????????? advantage lies in its streamlined, high-throughput protocol, affordable customization, and low capital cost. FirePlex????????????? readout is performed on standard flow cytometers, and FirePlex????????????? is offered as a service for users with limited access to flow instruments.

Proper citation: Firefly BioWorks (RRID:SCR_012320) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ec2kegg/

A perl-based package to perform comparative analysis of metabolic pathways between two organisms.

Proper citation: EC2KEGG (RRID:SCR_012127) Copy   

•   Source: SciCrunch Registry

https://www.genebygene.com/

Gene By Gene offers a full suite of genetic services, including clinical gene tests, exome sequencing, genome sequencing. In addition, the recent acquisition of bioinformatics experts, Arpeggi Inc., core also offers a full end-to-end solution for sequencing projects and bioinformatics.

Proper citation: Gene By Gene (RRID:SCR_012248) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/cnvcapseq/

Software for accurate and sensitive CNV discovery and genotyping in long-range targeted resequencing.

Proper citation: cnvCapSeq (RRID:SCR_012126) Copy   

•   Source: SciCrunch Registry