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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Global Initiative on Sharing All Influenza Data Resource Report Resource Website 1000+ mentions |
Global Initiative on Sharing All Influenza Data (RRID:SCR_018251) | GISAID | data or information resource, topical portal, database, portal, disease-related portal | Portal to share hCoV-19 genome sequences. Collection of genome sequences and related clinical and epidemiological data associated with coronavirus hCoV-19. Global repository of SARS-CoV-2 genomes. Initiative involves public-private-partnerships between Freunde of GISAID and governments of Federal Republic of Germany, Singapore and United States of America, with support from private and corporate philanthropy.International database of hCoV-19 genome sequences and related clinical and epidemiological data. Resource for influenza and hCoV-19 data. | hCoV19, hCoV-19 genome sequence, data, coronavirus, SARS coronavirus, Coronavirus, genome, genome database, influenza, SARS-CoV infection, SARS-CoV-2, COVID-19 |
lists: Health Data Research UK COVID-19 Initiative is listed by: Data and Computational Resources to Address COVID-19 is related to: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation works with: Nextstrain |
CoV19, COVID19, COVID-19 | PMID:28382917 | Restricted | SCR_018279, r3d100010126, SCR_018318 | https://doi.org/10.17616/R3Q59F | SCR_018251 | 2026-08-07 09:29:06 | 2596 | |||||
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TDimpute Resource Report Resource Website 1+ mentions |
TDimpute (RRID:SCR_018306) | software resource, software application, data analysis software, data processing software | Software tool to transfer learning based deep neural network to impute missing gene expression data from DNA methylation data. | Transfer learning; gene expression prediction; DNA methylation; TCGA, neural network, missing gene expression, data, bio.tools |
is listed by: Debian is listed by: bio.tools |
DOI:10.1101/803692 | Free, Available for download, Freely available | biotools:tDimpute, BioTools:TDimpute | https://bio.tools/TDimpute, https://bio.tools/TDimpute, https://bio.tools/TDimpute | SCR_018306 | 2026-08-07 09:29:01 | 1 | |||||||
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SARS-CoV-2-Sequences Resource Report Resource Website 10+ mentions |
SARS-CoV-2-Sequences (RRID:SCR_018319) | data or information resource, data set, service resource, storage service resource, data repository | Collection of SARS-CoV-2 sequences currently available in GenBank genetic sequence database and Sequence Read Archive. Updated as additional sequences are released. | SARS-CoV-2, SARS coronavirus, SARS-CoV infection, Coronavirus, data, SARS-CoV-2 sequence collection, nucleotide, genome, Betacoronavirus, protein |
works with: GenBank works with: NCBI Sequence Read Archive (SRA) |
COVID-19 | The Federal Government | Free, Available for download, Freely available | SCR_018319 | Severe Acute Respiratory Syndrome CoronaVirus 2 Sequences | 2026-08-07 09:29:07 | 37 | |||||||
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NIH Division of Nutrition Research Coordination Resource Report Resource Website |
NIH Division of Nutrition Research Coordination (RRID:SCR_001469) | DNRC | data or information resource, portal, training resource, topical portal | Coordinates nutritional sciences-related research and research training across the National Institutes of Health (NIH) and among Federal Agencies by providing mechanisms to communicate research, research training, policy, and education initiatives. The DNRC facilitates the exchange of information, coordinates workshops and seminars on critical issues, encourages national and international research collaborations, and serves as the NIH primary point of contact for the Department of Health and Human Services (DHHS) and other agencies, departments, and organizations in matters pertaining to nutritional sciences and physical activity. Through its dedicated efforts to promote scientific policy reviews, innovative research, interagency collaboration, and technical advancements, the DNRC strives to define the increasing roles of nutritional sciences and physical activity in health promotion and disease prevention and treatment. | nutrition, adult human, child, nutritional sciences, physical activity, health promotion, disease prevention, treatment |
is listed by: NIDDK Information Network (dkNET) has parent organization: National Institutes of Health is parent organization of: Human Nutrition Research Information Management |
NIH | Free, Freely Available | nlx_152699 | http://dnrc.nih.gov/ | SCR_001469 | Division of Nutrition Research Coordination | 2026-08-07 09:25:13 | 0 | |||||
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Epidemiology of Diabetes Interventions and Complications Resource Report Resource Website 1+ mentions |
Epidemiology of Diabetes Interventions and Complications (RRID:SCR_001468) | EDIC | data or information resource, resource, database, bibliography, clinical trial | Publications from a multi-center, longitudinal, observational study examining the risk factors associated with the long-term complications of type 1 diabetes. The study began in 1994 and follows the 1441 participants previously enrolled in the Diabetes Control and Complications Trial (DCCT), http://diabetes.niddk.nih.gov/dm/pubs/control/index.aspx. The primary aim of EDIC is to examine the long-term effects of conventional vs. intensive diabetes treatment received during the DCCT on the subsequent development and progression of microvascular, neuropathic and cardiovascular complications. This involves studying the influence of genetic factors and other factors such as HbA1c, blood pressure, lipid levels, and treatment modalities on the development and progression of these complications. Annual or biennial measurements (using DCCT methods, standardized protocols and central laboratories) of vascular events, albumin excretion, GFR, ECG, ankle-brachial BP index, serum lipids and HbA1c allows the following analyses: 1) continuation of intention-to-treat analyses to determine long-term effects of prior separation of glycemic levels; 2) risk factors for macrovascular outcomes; 3) correlation of progression of micro- and macrovascular outcomes. The current updated version of the EDIC Protocol is available for download. EDIC is made up of 28 clinical centers, one data coordinating center and one clinical coordinating center. | longitudinal, observational, nephropathy, macrovascular, complication, risk factor, clinical, genetic factor, hba1c, blood pressure, lipid level, treatment modality, complication |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Central Repository is related to: Diabetes Control and Complications Trial is related to: Diabetes Control and Complications Trial has parent organization: George Washington University; Washington D.C.; USA |
Type 1 diabetes, Diabetes | NIDDK 4U01DK094157 | Free, Freely Available | nlx_152698 | SCR_001468 | 2026-08-07 09:25:13 | 1 | ||||||
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Adult to Adult Living Donor Liver Transplantation Cohort Study Resource Report Resource Website |
Adult to Adult Living Donor Liver Transplantation Cohort Study (RRID:SCR_001494) | A2ALL | data or information resource, resource, topical portal, disease-related portal, portal, research forum portal | Study consisting of nine liver transplant centers with expertise in adult living-donor liver transplantation (LDLT) and a central data coordinating center to provide valuable information on the outcomes of adult to adult living donor liver transplantation (AALDLT) to aid decisions made by physicians, patients, and potential donors. The study will establish and maintain the infrastructure required to accrue and follow sufficient numbers of patients being considered for and undergoing AALDLT to provide generalizable data from adequately powered studies. The major aims of A2ALL are as follows: * Quantify the impact of choosing LDLT on the candidate for transplantation * Characterize the difference between LDLT and deceased donor liver transplant (DDLT) in terms of post-transplant outcomes, including patient and graft survival, surgical morbidity, and resource utilization on the recipient of a transplant * Determine the short- and long-term health and quality of life (QOL) impact of donation, including (a) morbidity after liver donation and (b) long-term health-related QOL of donors. * Standardize and assess the role of informed consent in affecting the decision to donate and satisfaction after living liver donation * Other aims include comparison of the severity of recurrence of hepatocellular carcinoma for DDLT versus LDLT, the systematic characterization of liver regeneration and function in donors and recipients, the evaluation of the differences in the immune response to LDLT versus DDLT, and the establishment of a robust data and sample repository on liver transplantation that may be used to study clinical and biological questions as new technologies and resources become available. Patients enrolled in the study will be followed and managed in a standardized fashion. | transplant, liver, adult human, risk factor, surgery, outcome, quality of life, clinical |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Michigan; Ann Arbor; USA |
Liver transplant, Liver disease | NIDDK 1U01DK62498 | PMID:18976306 PMID:18756453 PMID:16135918 |
Free, Freely available | nlx_152749 | http://www.nih-a2all.org/ | SCR_001494 | A2ALL: The Adult to Adult Living Donor Liver Transplantation Cohort Study | 2026-08-07 09:25:13 | 0 | |||
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Behavior Enhances Drug Reduction of Incontinence Resource Report Resource Website |
Behavior Enhances Drug Reduction of Incontinence (RRID:SCR_001495) | BE-DRI | clinical trial, data or information resource, bibliography, resource | Multi-center randomized clinical trial to determine if the addition of behavioral treatment to drug therapy for the treatment of urge incontinence will make it possible to discontinue the drug and still maintain a reduced number of accidents. The most popular treatments for urge incontinence are drug therapy and behavior therapy, each with its own limitations. In this clinical study, the Urinary Incontinence Treatment Network (UITN) aims to determine differences with the addition of behavioral treatment to drug therapy alone. | drug therapy, behavioral therapy, female, urinary incontinence, overactive bladder, combined modality therapy, quality of life, pelvic floor muscle exercise, tolterodine, clinical |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) has parent organization: Urinary Incontinence Treatment Network |
Urge incontinence, Urinary Incontinence | NIDDK U01DK58225; NIDDK U01DK58234; NIDDK U01DK58229; NIDDK U01DK58231; NIDDK U01DK60397; NIDDK U01DK60401; NIDDK U01DK60395; NIDDK U01DK60393; NIDDK U01DK60380; NIDDK U01DK60379 |
PMID:16919506 | Free, Freely available | nlx_152752 | http://www.uitn.net/bedri.asp | SCR_001495 | 2026-08-07 09:25:13 | 0 | ||||
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Standardization of C-peptide measurements Resource Report Resource Website |
Standardization of C-peptide measurements (RRID:SCR_001499) | Standardization of c-peptide | resource, data or information resource, narrative resource, standard specification | Standardization of c-peptide by calibrating C-peptide measurement to a reference method can increase comparability between laboratories. The C-peptide standardization program is supported to establish reliability in results and facilitate the conduct of international clinical trials. For c-peptide, purified or processed material shows significant matrix effects and cannot be used for calibration. The C-peptide program has evaluated the use of single donor and pooled specimens for use by manufacturers in the calibration of these assays and determined that this strategy will reduce C-peptide variability among different assay methods. The standardization process through manufacturer re-calibration is ongoing. | c-peptide, insulin secretion, clinical, calibration |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Missouri School of Medicine; Missouri; USA |
Diabetes | NIDDK 200200409985 | PMID:18420730 | Free, Freely available | nlx_152766 | SCR_001499 | C-peptide Standardization | 2026-08-07 09:25:13 | 0 | ||||
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HEALTHY study Resource Report Resource Website 1+ mentions |
HEALTHY study (RRID:SCR_001530) | HEALTHY | data or information resource, resource, narrative resource, training material, clinical trial | Primary prevention trial conducted in 42 middle schools at 7 locations across the US to impact risk factors for type 2 diabetes in adolescents. Students were recruited at the start of 6th grade (fall 2006) and followed to the end of 8th grade (spring 2009). Half of the schools were randomized to receive an intervention that integrated four components: the school nutrition environment, physical education class activities, behavior change initiatives, and educational and promotional communications activities. | risk factor, adolescent, intervention, nutrition, behavior, physical education, communication, social marketing, activity, promotion, body mass index, fasting glucose, fasting insulin, male, female, hispanic, african-american, bibliography, prevention |
is listed by: ClinicalTrials.gov is listed by: NIDDK Central Repository is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources |
Type 2 diabetes, Control, Obesity | NIDDK ; American Diabetes Association |
PMID:20581420 PMID:19623190 PMID:19623191 PMID:19623189 PMID:19623188 PMID:19623187 PMID:19623185 PMID:19623184 PMID:19196888 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152833 | https://www.niddkrepository.org/studies/healthy/ | SCR_001530 | HEALTHY Study Group, HEALTHY Intervention Program | 2026-08-07 09:25:13 | 7 | |||
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Human Immunology Project Consortium Resource Report Resource Website 10+ mentions |
Human Immunology Project Consortium (RRID:SCR_001491) | HIPC | portal, data or information resource, consortium, organization portal | Consortium established to capitalize on recent advances in immune profiling methods in order to create a novel public resource that characterizes diverse states of the human immune system following infection; prior to and following vaccination against an infectious disease; or prior to and following treatment with an immune adjuvant that targets a known innate immune receptor(s). Through this program, well-characterized human cohorts are studied using a variety of modern analytic tools, including multiplex transcriptional, cytokine, and proteomic assays; multiparameter phenotyping of leukocyte subsets; assessment of leukocyte functional status; and multiple computational methods. Centralized research resources and a comprehensive, centralized database will be constructed for use by the greater scientific community. The information gained from the program will provide a comprehensive understanding of the human immune system and its regulation, and will reveal novel associations between components of the immune system and other biological systems, identify novel immune mediators and pathways, establish predictors of vaccine safety in different populations, and enable the rapid evaluation of different vaccine formulations and administration regimens in human populations. | immune profiling, immune system, infection, vaccine, infectious disease, immune adjuvant, immune receptor, multiplex assay, phenotyping, systems biology, mass spectrometry, regulation, mediator, pathway, database, leukocyte, transcriptome, proteome | is parent organization of: ImmuneSpace | Infection, Vaccination, Treatment with immune adjuvant | NIAID | Free, Freely available | SciRes_000173 | SCR_001491 | immune profiling, immuneprofiling.org | 2026-08-07 09:25:13 | 17 | |||||
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Diabetic Retinopathy Clinical Research Network Resource Report Resource Website 1+ mentions |
Diabetic Retinopathy Clinical Research Network (RRID:SCR_001514) | DRCR.net, DRCRnet | data or information resource, data set, topical portal, slide, bibliography, research forum portal, clinical trial, portal, disease-related portal | A collaborative network to facilitate multicenter clinical research of diabetic retinopathy, diabetic macular edema and associated conditions. It supports the identification, design, and implementation of multicenter clinical research initiatives focused on diabetes-induced retinal disorders. Principal emphasis is placed on clinical trials, but epidemiologic outcomes and other research may be supported as well. It currently includes over 109 participating sites (offices) with over 320 physicians throughout the United States. Closed and active studies are listed along with the associated protocols, public datasets, and publications. | eye, retina, clinical, clinical trial, epidemiology, outcome, ophthalmic, ophthalmology, experimental protocol |
is listed by: NIDDK Information Network (dkNET) has parent organization: Jaeb Center for Health Research |
Diabetic retinopathy, Diabetic macular edema, Diabetes, Retinopathy, Macular edema, Diabetes-induced retinal disorder | NEI EY14231; NEI EY018817 |
Public, Registration required, To download data sets | nlx_152816 | SCR_001514 | Diabetic Retinopathy Clinical Research Network (DRCR.net), DRCR Network | 2026-08-07 09:25:13 | 1 | |||||
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Diabetes Research in Children Network Resource Report Resource Website 1+ mentions |
Diabetes Research in Children Network (RRID:SCR_001512) | DirecNet | data or information resource, data set, topical portal, slide, bibliography, research forum portal, clinical trial, portal, disease-related portal | Network of clinical centers and a coordinating center that investigate the potential use of glucose monitoring technology and its impact on the management of type 1 diabetes in children. Specific goals for the network include the following: * Assess the accuracy of continuous monitoring devices in order to determine if these devices are useful in improving glycemic control and preventing hypoglycemia in children with T1DM. * Determine the optimal utilization of continuous glucose monitors in the management of T1DM in children. * Assess the impact of continuous glucose monitoring on quality of life for the child and family. * Develop tools for the child and parents to use for incorporating continuous glucose monitors into diabetes self-management. * To assess possible changes in neurocognitive function and how it relates to frequency of hypoglycemia in young children with type 1 diabetes. * Evaluate and develop distinct, age-appropriate treatment approaches to T1DM in children. * Use continuous glucose monitoring to characterize the glycemic profile of nondiabetic children. * Develop statistical methods for the analysis of continuous glucose monitoring data. Closed and active studies are listed along with the associated protocols, public datasets, and publications. | child, experimental protocol, monitoring device, glycemic control, hypoglycemia, glucose monitor, quality of life, neurocognitive function, treatment, glycemic profile, nondiabetic, young human |
is listed by: NIDDK Information Network (dkNET) has parent organization: Jaeb Center for Health Research |
Type 1 diaberes, Diabetes | NICHD U10HD056526 | Public, Registration required, To download datasets | nlx_152814 | http://public.direc.net/ | SCR_001512 | Diabetes Research in Children Network, Diabetes Research in Children Network (DirecNet) | 2026-08-07 09:25:13 | 1 | ||||
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Treatment Options for type 2 Diabetes in Adolescents and Youth Resource Report Resource Website |
Treatment Options for type 2 Diabetes in Adolescents and Youth (RRID:SCR_001547) | TODAY | data or information resource, resource, narrative resource, training material, database, clinical trial | Randomized, double blind, nationwide clinical trial to compare the efficacy and safety of three interventions to treat adolescents and youth with type 2 diabetes (T2D): (1) metformin alone, (2) metformin plus rosiglitazone, and (3) metformin plus an intensive lifestyle intervention called the TODAY Lifestyle Program (TLP). The secondary aims are to: compare and evaluate the safety of the three treatment arms; compare the effects of the three treatments on the pathophysiology of type 2 diabetes (T2D) with regards to beta cell function and insulin resistance, body composition, nutrition, physical activity and aerobic fitness, cardiovascular risk factors, microvascular complications, quality of life, and psychological outcomes; evaluate the influence of individual and family behaviors on treatment response; and compare the relative cost effectiveness of the three treatment arms. The study recruits patients over a three-year period and follows patients for a minimum of two years. Patients are randomized within two years of the diagnosis of T2D. Materials that were used for the study are made publicly available: * The TODAY Standard Diabetes Education (TSDE) program, developed especially for youth with type 2 diabetes. (All participants received the TSDE program) * The TODAY Lifestyle Program (TLP) that was among the treatments tested. | adolescent, child, young human, glycemic control, metformin, drug, rosiglitazone behavior, lifestyle program, lifestyle change, intervention, treatment, safety, efficacy, male, female, experimental protocol, bibliography |
is listed by: ClinicalTrials.gov is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Central Repository has parent organization: George Washington University; Washington D.C.; USA |
Type 2 diabetes, Diabetes | NIDDK U01DK61212; NIDDK U01DK61230; NIDDK U01DK61239; NIDDK U01DK61242; NIDDK U01DK61254 |
PMID:20962021 PMID:17448130 PMID:19823189 |
Free, Freely available | nlx_152858 | SCR_001547 | Treatment Options for type 2 Diabetes in Adolescents & Youth, TODAY study | 2026-08-07 09:25:14 | 0 | ||||
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Urinary Incontinence Treatment Network Resource Report Resource Website |
Urinary Incontinence Treatment Network (RRID:SCR_001543) | UITN | data or information resource, resource, topical portal, disease-related portal, portal, research forum portal | Group of collaborating investigators who conduct long-term studies and clinical trials of the most commonly used surgical, pharmacological, and behavioral approaches for management of urinary incontinence in women diagnosed with stress and mixed incontinence. | female, urologist, urogynecologist, clinical trial, bibliography |
is listed by: NIDDK Information Network (dkNET) is parent organization of: Behavior Enhances Drug Reduction of Incontinence is parent organization of: SISTEr is parent organization of: TOMUS |
Urinary incontinence | NIDDK ; NICHD |
Free, Freely available | nlx_152853 | SCR_001543 | 2026-08-07 09:25:14 | 0 | ||||||
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SEARCH for Diabetes in Youth Resource Report Resource Website 1+ mentions |
SEARCH for Diabetes in Youth (RRID:SCR_001540) | SEARCH Study, SEARCH | data or information resource, resource, topical portal, disease-related portal, portal, research forum portal | National multi-center study aimed at understanding more about diabetes among children and young adults in the United States less than 20 years of age in six geographically dispersed populations that encompass the ethnic diversity of the United States. SEARCH has been helping to find answers about the types of diabetes, its complications, and how having diabetes affects the lives of children and young adults. There are more than 20,000 study participants representing all different racial and ethnic backgrounds who have helped SEARCH determine the extent of diabetes in the community and its impact on different populations. The SEARCH Study invites Investigators interested in childhood Diabetes Research to collaborate on matters of interest to the field of childhood Diabetes. | child, early adult, multi-racial, complication, education, diagnosis, cost, blood, urine, bibliography, biomaterial supply resource |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) |
Diabetes | Centers for Disease Control and Prevention PA number 00097; NIDDK Y1DK1326 |
PMID:15465616 | Free, Freely available | nlx_152850 | SCR_001540 | 2026-08-07 09:25:14 | 4 | |||||
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Clarity resources Resource Report Resource Website 10+ mentions |
Clarity resources (RRID:SCR_001387) | CLARITY Resources | video resource, data or information resource, narrative resource, training resource, experimental protocol | Protocols and other training materials related to the CLARITY protocol, a technique for the transformation of intact tissue into a nanoporous hydrogel-hybridized form (crosslinked to a three-dimensional network of hydrophilic polymers) that is fully assembled but optically transparent and macromolecule-permeable. | workshop, protocol, specimen preparation, transparent brain, glass brain, brain, neuroimaging, phenotyping, tissue, brain tissue, cortex, hippocampus, thalamus, ventral, brainstem |
is used by: NIF Data Federation is used by: Integrated Videos has parent organization: Stanford University; Stanford; California |
NIMH 4R01MH099647-05 | PMID:23575631 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152559 | SCR_001387 | Clarity resource | 2026-08-07 09:25:12 | 18 | |||||
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Longitudinal Assessment of Bariatric Surgery Resource Report Resource Website 1+ mentions |
Longitudinal Assessment of Bariatric Surgery (RRID:SCR_001536) | LABS | data or information resource, resource, narrative resource, topical portal, disease-related portal, portal, research forum portal | Consortium comprised of six clinical centers and a data coordinating center to facilitate coordinated clinical, epidemiological, and behavioral research in the field of bariatric surgery, through the cooperative development of common clinical protocols and a bariatric surgery database that will collect information from participating clinical centers. LABS will help pool the necessary clinical expertise and administrative resources to facilitate the conduct of multiple clinical studies in a timely, efficient manner. Also, the use of standardized definitions, clinical protocols, and data-collection instruments will enhance the investigator's ability to provide meaningful evidence-based recommendations for patient evaluation, selection, and follow-up care. The consortium was funded in September 2003. The investigators have collaboratively developed a core database and clinical protocols, and subject enrollment began in early 2005. A repository of data and biological specimens for future research also will be collected by the centers participating in LABS. These will provide valuable resources for future study of obesity and its complications. | clinical, epidemiology, behavior, longitudinal, risk, benefit, surgical procedure, clinical outcome, database, clinical trial, experimental protocol, biomaterial supply resource |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: University of Pittsburgh; Pennsylvania; USA |
Bariatric surgery, Obesity | NIDDK 5U01DK066557 | nlx_152842 | SCR_001536 | Longitudinal Assessment of Bariatric Surgery Consortium, LABS consortium, Longitudinal Assessment of Bariatric Surgery (LABS) Consortium | 2026-08-07 09:25:14 | 1 | ||||||
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ALFRED Resource Report Resource Website 50+ mentions |
ALFRED (RRID:SCR_001730) | ALFRED | data or information resource, database, service resource, storage service resource, data repository | A public curated compilation of allele frequency data on anthropologically defined human population samples linked to the molecular genetics-human genome databases. Only data on well defined population samples that are large enough to yield reasonably accurate frequencies and for polymorphisms sufficiently defined to be replicable can be included in ALFRED. Researchers wishing to have their data entered into ALFRED should contact them. Initially, ALFRED contained primarily data generated in the laboratories of K.K. and J.R. Kidd in the Department of Genetics at Yale, including extensive unpublished data. Data from the published literature are being entered into ALFRED in a systematic way, with a focus on polymorphisms studied in many different populations. ALFRED is distinct from such databases as dbSNP, which catalogs sequence variation. ALFRED's focus is on allele frequencies in diverse anthropologically defined populations. It is not a compendium of human DNA polymorphisms but of frequencies of selected polymorphisms with an emphasis on those that have been studied in multiple populations. All of the data in ALFRED are considered to be in the public domain and available for use in research and teaching. ALFRED provides easy searching options including versatile "Keyword search" and also has numerous summary tables providing quick overviews of contents by chromosome, population, average heterozygosity, Fst and others, all available under various tabs from the ALFRED homepage. | allele frequency, dna polymorphism, haplotype, high throughput, genome, population, sample, education, polymorphism, allele, chromosome, heterozygosity, fst, loci, pathway, genetics, FASEB list | has parent organization: Yale School of Medicine; Connecticut; USA | NIGMS P01GM 57672 | PMID:19325849 PMID:11125124 PMID:12209575 |
Free, Freely Available | nif-0000-02541, r3d100012700 | https://doi.org/10.17616/R3GZ2J | SCR_001730 | The ALlele FREquency Database, ALlele FREquency Database | 2026-08-07 09:25:17 | 74 | ||||
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Sanford-Burnham Neuroscience and Aging Research Center Resource Report Resource Website 1+ mentions |
Sanford-Burnham Neuroscience and Aging Research Center (RRID:SCR_001688) | NARC | data or information resource, portal, topical portal | Center that translates basic science discoveries into new treatments to extend lifespan and to combat degenerative disorders associated with aging or development. Their researchers are discovering the etiological pathways as well as small-molecule and stem cell-based treatments to address the clinical unmet need of these patients. The Center uses a team based approach to apply their expertise in stem cells to develop therapies for new treatments for stroke and Parkinson's disease. They are also performing high-throughput screens to identify new molecules to protect the synapses of nervesthe connections between nerves that mediate movement, memory and cognition for Alzheimer's, Parkinson's and autism. By studying the links between Down syndrome and Alzheimer's disease, they are exploring new treatments to improve cognition in both disorders. Their collaborations with clinical partners enable them to test new discoveries in human trials, with a goal to improve the lives of patients and families affected by neurodegenerative disease and aging disorders. | neuron, cell, clinical, pathway, small molecule, stem cell, treatment, drug, synapse, nerve | has parent organization: Sanford Burnham Prebys Medical Discovery Institute | Aging, Alzheimer's disease, Parkinson's disease, Autism, Neurodegenerative disease, Aging disorder, Down syndrome, Stroke | Free, Freely Available | nif-0000-10181 | http://www.sanfordburnham.org/research/neuroscience/Pages/Home.aspx | SCR_001688 | NASCR, Neuroscience and Aging Research Center, Sanford-Burnham Del E. Webb Neuroscience Aging and Stem Cell Research Center, Del E. Webb Neuroscience Aging and Stem Cell Research Center, Sanford-Burnham NASCR, Burnham Institute NASCR | 2026-08-07 09:25:16 | 4 | |||||
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MatrixDB Resource Report Resource Website 50+ mentions |
MatrixDB (RRID:SCR_001727) | MatrixDB | database, data or information resource, production service resource, service resource | Freely available database focused on interactions established by extracellular proteins and polysaccharides, taking into account the multimeric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers). MatrixDB is an active member of the International Molecular Exchange (IMEx) consortium and has adopted the PSI-MI standards for annotating and exchanging interaction data. It includes interaction data extracted from the literature by manual curation, and offers access to relevant data involving extracellular proteins provided by the IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database. The database reports mammalian protein-protein and protein-carbohydrate interactions involving extracellular molecules. Interactions with lipids and cations are also reported. MatrixDB is focused on mammalian interactions, but aims to integrate interaction datasets of model organisms when available. MatrixDB provides direct links to databases recapitulating mutations in genes encoding extracellular proteins, to UniGene and to the Human Protein Atlas that shows expression and localization of proteins in a large variety of normal human tissues and cells. MatrixDB allows researchers to perform customized queries and to build tissue- and disease-specific interaction networks that can be visualized and analyzed with Cytoscape or Medusa. Statistics (2013): 2283 extracellular matrix interactions including 2095 protein-protein and 169 protein-glycosaminoglycan interactions. | extracellular, protein fragment, biomolecule, cation, cleavage, collagen, glycosaminoglycan, human, interaction, laminin, lipid, mammalian, matricryptin, matrikin, matrix, molecule, monomer, mulimerization, multimer, polysaccharide, protein, protein-carbohydrate interaction, protein-protein interaction, recognition, thrombospondin, interactome, extracellular protein, protein-polysaccharide interaction, extracellular interaction, molecular interaction, model organism, inorganic, small molecule-protein, small molecule, extracellular matrix protein, protein-glycosaminoglycan interaction, bio.tools, FASEB list |
is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: IMEx - The International Molecular Exchange Consortium is related to: Gene Ontology is related to: PSI-MI is related to: HPRD - Human Protein Reference Database is related to: Interaction Reference Index is related to: ConsensusPathDB is related to: IMEx - The International Molecular Exchange Consortium is related to: PSICQUIC Registry is related to: IntAct has parent organization: Claude Bernard University Lyon 1; Lyon; France |
European Union contract FP7-HEALTH-2007-223411 | PMID:20852260 PMID:19147664 |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:matrixdb, r3d100010672, nif-0000-10226 | https://bio.tools/matrixdb, https://doi.org/10.17616/R3M03H | http://matrixdb.ibcp.fr/ | SCR_001727 | MatrixDB: Extracellular Matrix Interactions Database, Extracellular Matrix Interactions Database | 2026-08-07 09:25:17 | 95 |
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Here are the facets that you can filter the data by.
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