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http://sourceforge.net/projects/plek/

An alignment-free software tool which uses a computational pipeline based on an improved k-mer scheme and a support vector machine (SVM) algorithm to distinguish lncRNAs from messenger RNAs (mRNAs), in the absence of genomic sequences or annotations. It is especially suitable for PacBio or 454 sequencing data and large-scale transcriptome data.

Proper citation: PLEK (RRID:SCR_012132) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/reditools/

A suite of python scripts to perform high-throughput investigation of RNA editing using next-generation sequencing data.

Proper citation: REDItools (RRID:SCR_012133) Copy   

•   Source: SciCrunch Registry

http://pprospector.sourceforge.net/

A pipeline of software programs to design and analyze PCR primers. It is built in Python using the open-source PyCogent toolkit.

Proper citation: PrimerProspector (RRID:SCR_012136) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/chem-x-infinity

CHEM-X-INFINITY specializes in the synthesis and development of original compound libraries for High-Throughput Screening (HTS) activities and Hit validations. All our compund are designed around original scaffolds which have not or barely been described in the literature. We use different QSAR model which allow us to provide the best selection of compounds for your needs.

Proper citation: CHEM-X-INFINITY (RRID:SCR_012377) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/icelogo/

Software that builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the studied system and the used protocol.

Proper citation: iceLogo (RRID:SCR_012137) Copy   

•   Source: SciCrunch Registry

http://musite.sourceforge.net/

A Java-based standalone application for predicting both general and kinase-specific protein phosphorylation sites.

Proper citation: Musite (RRID:SCR_012141) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/pronovus-bioscience-llc

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 25,2024.

Proper citation: ProNovus Bioscience LLC (RRID:SCR_012266) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/hlaforest/

Software that predicts HLA haplotype by hierarchically weighting reads and using an iterative, greedy, top down pruning technique. HLAforest uses BioPerl to read in FASTA files. Alignments use Bow tie, although any alignment tool can be used to generate SAM alignments for use as input to HLAforest.

Proper citation: HLAforest (RRID:SCR_012146) Copy   

•   Source: SciCrunch Registry

https://www.promab.com/about-us

Develops and commercializes recombinant proteins and custom monoclonal antibodies through integration of bioinformatics, gene cloning, protein expression and purification, and immunology, using high-throughput technologies. ProMab applies its proteins and antibodies to deliver diagnostic products as well as services targeting the global biomedical market through collaborations with other biotechnology and bio-reagent companies.

Proper citation: ProMab Biotechnologies Inc. (RRID:SCR_012380) Copy   

•   Source: SciCrunch Registry

http://www.sciexnceexchange.com/facilities/qfab-bioinformatics

Core facility providing support in bioinformatics, biostatistics and biodata to life sciences and health researchers across Queensland and beyond. Services include microarrays, next generation sequencing and proteomics profiling, biostatistical support from design of experiments, to analysis and interpretation, help High Degree Research students and Early Career Researchers in management, mining and visualization of small and big data, leveraging the cloud and hpc research infrastructure powered by the Queensland Cyber Infrastructure Foundation., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: QFAB Bioinformatics (RRID:SCR_012513) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/advanced-cell-diagnostics-inc

A molecular pathology company that sells tissue-based diagnostic tests for personalized medicine.

Proper citation: Advanced Cell Diagnostics (RRID:SCR_012481) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/trevigen

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 19,2024. Trevigen Cell Assays (TCA), a division of Trevigen, Inc., was established in 2008 to conduct contract research work for the pharmaceutical, biotechnology, government and academic segments of the medical research market. TCA specializes in designing and conducting assays for lead compounds and genotoxic screening based on DNA damage and repair as well as cancer cell behavior.

Proper citation: Trevigen Cell Assays (RRID:SCR_012449) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/advanced-bioscience-laboratories

Advanced BioScience Laboratories, Inc (ABL) is a leading contract research and manufacturing organization, partnering with our clients to advance their vaccine and therapeutic development programs. Our unique combination of preclinical and clinical services provide the tools to address the scientific challenges encountered during any stage of product development. For preclinical studies, we utilize immunological, molecular, and cell-based assay platforms for candidate selection. We offer proof-of-concept in vivo studies with preclinical immunomonitoring and efficacy and potency testing. Once a clinical candidate is identified, ABL''s in-house cGMP suites are designed for single-use technologies accommodating a wide range of products, including mammalian- and microbial-based protein therapeutics as well as viral vectors and vaccines.

Proper citation: Advanced BioScience Laboratories (RRID:SCR_012576) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/biotrend-chemikalien-gmbh-cologne

After more than a decade of experience in the sale and marketing of research products for Life Science Research, Werner Hassler, Switzerland and Gunther Jaeger, Germany founded the Cologne based BIOTREND Chemikalien GmbH in May 1988. BIOTREND was instigated in order to meet the growing demand from customers for an independent and technologically orientated distribution facility offering high quality, yet cost-effective products for biochemical, immunochemical and pharmaceutical research. Through our innovative strength we are not only providing our customers a vast product range, but also a high quality, first-class service package. At present we offer more than 90.000 products that have successfully been implemented not only in the drug discovery market, but also in cancer research as well as other scientific fields.

Proper citation: BIOTREND Chemikalien GmbH (RRID:SCR_012423) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/acrobiosystems

ACRObiosystems is aiming to be one of the leading bulk proteins/mAb products and biologics research service providers. we offer exceptional speed without compromising product quality.

Proper citation: ACRObiosystems (RRID:SCR_012550) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/kinexus-bioinformatics-corporation

Core is a systems proteomics/bioinformatics company that conducts in-house signal transduction research. Core services also enable for identification and validation of biomarkers, drug targets and therapeutic compounds.

Proper citation: Kinexus Bioinformatics Corporation (RRID:SCR_012553) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/genetica-dna-laboratories

Genetica DNA Laboratories is a full service DNA testing laboratory providing a wide range of DNA testing services for over two decades worldwide. Genetica has been accreadited by AABB for DNA parentage testing for almost 20 years.

Proper citation: Genetica DNA Laboratories (RRID:SCR_012558) Copy   

•   Source: SciCrunch Registry

https://www.creative-biolabs.com/home.htm

Biotechnology company specializing in developing and production of antibodies and service provider for customized products and relevant services. Committed to changing traditional antibody model and establishing new service platform. Specialized in providing custom biotechnology and pharmaceutical services that cover full scope of biotechnology needs of early drug discovery and drug development.

Proper citation: Creative Biolabs (RRID:SCR_012557) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/memorial-sloan-kettering-cancer-center

Memorial Sloan Kettering Cancer Center is committed to exceptional patient care, leading edge research, and superb educational programs. Close collaboration between our physicians and scientists provides patients with care available to discover more effective strategies to prevent, control, and ultimately cure cancer. Provides researchers with Organic Synthesis Core Facility, High-Throughput Drug Screening Facility and Antibody and Bioresource Core Facility.

Proper citation: Memorial Sloan-Kettering Cancer Center Labs and Facilities (RRID:SCR_012559) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/irvine-scientific

A commercial contract research organization that mentions embryo culture media for IVF procedures and cell therapy on their website.

Proper citation: Irvine Scientific (RRID:SCR_012440) Copy   

•   Source: SciCrunch Registry