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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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pyControl Resource Report Resource Website 1+ mentions |
pyControl (RRID:SCR_021612) | software resource | Open source software Python tool for behavioural experiment control. Part of pyControl system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: pyControl project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pycontrol/ | SCR_021612 | 2026-08-01 12:07:14 | 7 | |||||||||
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Open Ephys Resource Report Resource Website 1+ mentions |
Open Ephys (RRID:SCR_021624) | nonprofit organization | Organization mission is to advance understanding of brain by promoting community ownership of neuroscience tools.Collaborative effort to develop, document, and distribute open source tools for systems neuroscience.Project aims to distribute reliable open source software as well as tools for extracellular recording and stimulation. | develop open source tools, distribute open source tools, neuroscience tools, OpenBehavior | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa651f | SCR_021624 | Open Ephys | 2026-08-01 12:07:15 | 6 | |||||||||
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Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats Resource Report Resource Website |
Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats (RRID:SCR_026968) | instrument resource | Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant. | OpenBehavior, low-cost implant, diaphragm EMG implant, diaphragm EMG recordings, awake, behaving rats, electromyography, | is listed by: OpenBehavior | PMID:39890457 | https://edspace.american.edu/openbehavior/project/an-implant-for-diaphragm-emg-recordings-in-awake-rats/ | SCR_026968 | 2026-08-01 12:14:01 | 0 | |||||||||
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One-rat Turnstile Resource Report Resource Website |
One-rat Turnstile (RRID:SCR_025570) | ORT | instrument resource | Open-source apparatus to enable continuous individual monitoring, training, and testing of rats without removing them from their social environment. This system utilizes RFID technology to track individual animals, minimizing human intervention and providing precise behavioral data. | OpenBehavior, apparatus, continuous individual monitoring, training, testing, rat, without removing from social environment, | is listed by: OpenBehavior | PMID:38557586 | SCR_025570 | One-rat Turnstile (ORT) | 2026-08-01 12:13:34 | 0 | ||||||||
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Falcon Resource Report Resource Website 1+ mentions |
Falcon (RRID:SCR_023199) | software toolkit, software resource | Open source software tool for closed loop neuroscientific experiments capable of sub-millisecond response latency over high-rate streaming data acquired from high-count multi-electrode arrays. Used for processing and controlling closed-loop neuroscience data. | OpenBehavior, processing and controlling closed-loop data, implementing closed loop neuroscience experiments, high rate streaming data, high count multi electrode arrays, neuroscience data | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa7526 | Free, Freely available | https://edspace.american.edu/openbehavior/project/falcon/ | SCR_023199 | 2026-08-02 09:08:53 | 6 | ||||||||
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ColonyTrack Resource Report Resource Website |
ColonyTrack (RRID:SCR_023026) | software toolkit, software resource | Software R package to process raw data from ColonyRack system. In addition to generating pre processed data and quality control information, range of high level metrics are calculated together with convenient tools for analysis. | OpenBehavior, discrete longitudinal tracking data, process raw data from ColonyRack system, generating pre processed data, quality control information | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/rtrack-colonytrack/ | SCR_023026 | 2026-08-02 09:08:35 | 0 | |||||||||
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Raspberry Pi Grating Resource Report Resource Website |
Raspberry Pi Grating (RRID:SCR_023157) | RPG | software toolkit, software resource | Software Python package written for Raspberry Pi for displaying visual stimuli and to provide real time feedback on stimulus timing. High performance python library for displaying drifting gratings on Raspberry Pi 3. | OpenBehavior, Raspberry Pi 3, displaying drifting gratings on Raspberry Pi 3, displaying visual stimuli, stimulus timing feedback, video data storage, data rapid display | is listed by: OpenBehavior | PMID:34464650 | Free, Freely available, Available to download | https://edspace.american.edu/openbehavior/project/rpg/ | SCR_023157 | 2026-08-02 09:08:40 | 0 | |||||||
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OpBox Resource Report Resource Website 1+ mentions |
OpBox (RRID:SCR_023269) | software toolkit, software resource | Open source electrophysiology hardware and software package for simultaneous EEG and EMG acquisition from multiple subjects. | OpenBehavior, electrophysiology, simultaneous EEG and EMG acquisition, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0212-20.2020 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=OpBoxPhys | SCR_023269 | 2026-08-02 09:08:36 | 1 | ||||||||
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RatInABox Resource Report Resource Website 1+ mentions |
RatInABox (RRID:SCR_023682) | software toolkit, software resource | Software Python toolkit for modelling locomotion and neuronal activity in continuous environments. Used to model realistic rodent locomotion and generate synthetic electrophysiological data from spatially modulated cell types. | OpenBehavior, modelling locomotion and neuronal activity, continuous environments, model realistic rodent locomotion, generate synthetic electrophysiological data, spatially modulated cell types, | is listed by: OpenBehavior | DOI:10.1101/2022.08.10.503541 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ratinabox/ | SCR_023682 | 2026-08-02 09:08:39 | 1 | ||||||||
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Camera Control Resource Report Resource Website |
Camera Control (RRID:SCR_021614) | software toolkit, software resource | Open source software package that allows video to be recorded in sync with behavior. Python GUI and scripts allows investigators to record from multiple imaging source camera feeds with associated timestamps for each frame. Python API to record video system timestamps from Imaging Source USB cameras. Package requires Windows 10, Anaconda, and Git, and is compatible with Imaging Source USB3 cameras. Part of Camera Control project. | Multiple imaging, source camera feeds, , record video system timestamps, Imaging Source USB cameras, OpenBehavior |
is listed by: OpenBehavior is related to: Camera Control project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/camera-control/ | SCR_021614 | Camera_Control | 2026-08-02 09:08:14 | 0 | ||||||||
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SHARCQ Resource Report Resource Website 1+ mentions |
SHARCQ (RRID:SCR_022498) | software toolkit, software resource | Software tools to register histological section images and cell count locations to mouse brain atlas. Semi automated workflow and GUI for automated brain slice histology alignment, registration, and cell quantification. Used to explore Allen Mouse Brain Atlas, register asymmetric slice images to atlas using manual input, and analyze region of interest data by registering locations of fluorescently labeled cells to standardized regions of Atlas. | OpenBehavior, atlas registration, brain mapping, cell-type, slicing, histology, cell quantification, automated, brain atlas, mice |
is listed by: OpenBehavior is related to: Allen Mouse Brain Reference Atlas is related to: Allen Institute for Brain Science has parent organization: University of Colorado Boulder; Colorado; USA |
PMID:35396257 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/sharcq/ | SCR_022498 | Slice Histology Alignment, and Cell Quantification, Registration | 2026-08-02 09:08:35 | 2 | |||||||
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AutomaticSleepScoringTool Resource Report Resource Website |
AutomaticSleepScoringTool (RRID:SCR_022300) | software toolkit, software resource | Software pipeline for sleep researchers to perform automatic sleep scoring for rodents. Artificial neural network for automated behavioral state classification in rats. | Artificial neural network, classifying behavioral states in rats, automatic sleep scoring, rat, electrophysiological readings, OpenBehavior | is listed by: OpenBehavior | DOI:10.7717/peerj.12127 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/automaticsleepscoringtool/ | SCR_022300 | 2026-08-02 09:08:30 | 0 | ||||||||
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Dual Port Lick Detector Resource Report Resource Website |
Dual Port Lick Detector (RRID:SCR_021521) | software toolkit, software resource | Distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior |
is listed by: OpenBehavior is related to: Dual port Lick Detector project |
DOI:10.1152/jn.00500.2018 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/ | SCR_021521 | DP-Lick-Detector | 2026-08-02 09:08:18 | 0 | |||||||
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Custom-fitting-of-implants Resource Report Resource Website |
Custom-fitting-of-implants (RRID:SCR_025270) | software resource, source code | Tutorial to custom-design and -fit implants to continuous and discontinuous skull surfaces. Universal Guide for Skull Extraction and Custom-Fitting of Implants to Continuous and Discontinuous Skulls. | OpenBehavior, Cranial Implants, Skull Extraction, Custom-Fitting of Implants, Continuous and Discontinuous Skulls, | is listed by: OpenBehavior | PMID:35641225 | https://edspace.american.edu/openbehavior/project/cranial-implants/ | SCR_025270 | custom-fitting cranial implants | 2026-08-03 09:38:28 | 0 | ||||||||
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Markerless Mouse Tracking for Social Experiments Resource Report Resource Website |
Markerless Mouse Tracking for Social Experiments (RRID:SCR_025368) | MaSoMoTr | software resource, source code | Markerless video-based tool to simultaneously track two interacting mice of the same appearance in controlled settings for quantifying behaviors such as different types of sniffing, touching, and locomotion to improve tracking accuracy under these settings without increased human effort. It incorporates conventional handcrafted tracking and deep-learning-based techniques. The tool is trained on small number of manually annotated images from basic experimental setup and outputs body masks and coordinates of the snout and tail-base for each mouse. | OpenBehavior, simultaneously track two interacting mice, controlled settings for quantifying behaviors, sniffing, touching, locomotion, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0154-22.2023 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/masomotr/ | SCR_025368 | 2026-08-03 09:38:44 | 0 | |||||||
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Autonomous Training of a Forelimb Motor Task Resource Report Resource Website |
Autonomous Training of a Forelimb Motor Task (RRID:SCR_021603) | software resource, source code | Software Python tool running on Raspberry Pi computer. Used for trial timing and data logging. Part of Autonomous Training of Forelimb Motor Task system. | Custom Python tool, task difficulty, trial timing, data logging, OpenBehavior |
is listed by: OpenBehavior is related to: Autonomous Training of a Forelimb Motor Task project |
DOI:10.1152/jn.00115.2017 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/autonomous-training-forelimb-motor-task/ | SCR_021603 | 2026-08-03 09:37:43 | 0 | ||||||||
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Operant Box for Auditory Tasks Resource Report Resource Website |
Operant Box for Auditory Tasks (RRID:SCR_021604) | software resource, source code | Software tool as part of Operant Box for Auditory Tasks system. | Operant Box, Auditory Tasks, OpenBehavior |
is listed by: OpenBehavior is related to: Operant Box for Auditory Tasks project |
DOI:10.3758/s13428-017-0906-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/operant-box-auditory-tasks-obat/ | SCR_021604 | 2026-08-03 09:37:25 | 0 | ||||||||
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Pipette Finding CNN Resource Report Resource Website |
Pipette Finding CNN (RRID:SCR_024992) | software resource, source code | Software application for convolutional neural network that assesses pipette positioning before patch clamp is begun to minimize patch clamping errors in electrophysiology experiments. Used for detecting pipette positioning and making patch clamping procedures. | OpenBehavior, convolutional neural network, pipette positioning assessement, minimize patch clamping errors, electrophysiology experiments, detecting pipette positioning, making patch clamping procedures, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pipette-finding-cnn/ | SCR_024992 | Pipette Finding Convolutional Neural Network | 2026-08-03 09:38:56 | 0 | ||||||||
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GoFish Ajuwon etal 2022 Resource Report Resource Website 1+ mentions |
GoFish Ajuwon etal 2022 (RRID:SCR_022511) | software resource, source code | Bonsai code for running GOFish platform for behavioural experiments in fish. | Bonsai code, running GOFish platform, behavioural experiments in fish, OpenBehavior | is listed by: OpenBehavior | DOI:10.1101/2022.04.04.486957 | Free, Available for download, Freely available | SCR_022511 | GoFish_Ajuwon_etal_2022 | 2026-08-03 09:37:58 | 2 | ||||||||
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Dual port Lick Detector project Resource Report Resource Website |
Dual port Lick Detector project (RRID:SCR_021454) | instrument resource, portal, data or information resource, project portal | Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Dual Port Lick Detector |
DOI:10.1152/jn.00500.2018 | Free, Freely available | SCR_021454 | Dual port Lick Detector | 2026-08-04 09:44:49 | 0 |
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