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http://www.arc.org.uk/
Proper citation: Arthritis research campaign (RRID:SCR_011097) Copy
Public research university situated in the city centre of Birmingham, England. Aston began as the Birmingham Municipal Technical School in 1895, evolving into the UK's first College of Advanced Technology in 1956
Proper citation: Aston University; Birmingham; United Kingdom (RRID:SCR_011098) Copy
The California Academy of Sciences is a multifaceted scientific institution committed to leading-edge research, to educational outreach, and to finding new and innovative ways to engage and inspire the public. This world-class scientific and cultural institution is based in San Francisco and recently opened a new facility in Golden Gate Park that houses an aquarium, a planetarium a natural history museum and a 4-story rainforest all under one roof. The new facility is also home to the Academy''s staff of world-class scientists, an education department that provides a wide range of student and teacher services, and an extensive science library with over 26 million specimens and artifacts. The Academy is an international center for scientific education and research and is at the forefront of efforts to understand and protect the diversity of Earth''s living things. The Academy has a staff of over 50 professional educators and Ph.D.-level scientists, supported by more than 100 Research and Field Associates and over 300 Fellows. It hosts 11 fields of research, including anthropology, aquatic biology, botany, comparative genomics, entomology, geology, herpetology, ichthyology, invertebrate zoology,mammalogy and ornithology. The Academy''s research collections, which are among the world''s largest, include more than 26 million specimensessential tools for comparative studies on the history and future of the natural world.
Proper citation: California Academy of Sciences (RRID:SCR_011132) Copy
An autonomous institution established through an Act of Parliament to serve as a nucleus for nurturing excellence in all aspects of health care. The object was to develop patterns of teaching in Undergraduate and Post-graduate Medical Education in all its branches so as to demonstrate a high standard of Medical Education in India; to bring together in one place educational facilities of the highest order for the training of personnel in all important branches of health activity; and to attain self-sufficiency in Post-graduate Medical Education. The Institute has comprehensive facilities for teaching, research and patient-care. As provided in the Act, AIIMS conducts teaching programs in medical and para-medical courses both at undergraduate and postgraduate levels and awards its own degrees. Teaching and research are conducted in 42 disciplines. In the field of medical research AIIMS is the lead, having more than 600 research publications by its faculty and researchers in a year. AIIMS also runs a College of Nursing and trains students for B.Sc.(Hons.) Nursing post-certificate) degrees. Twenty-five clinical departments including four super specialty centers manage practically all types of disease conditions with support from pre- and Para-clinical departments. However, burn cases, dog-bite cases and patients suffering from infectious diseases are not entertained in the AIIMS Hospital. AIIMS also manages a 60-bed hospital in the Comprehensive Rural Health Centre at Ballabgarh in Haryana and provides health cover to about 2.5 lakh population through the Centre for Community Medicine.
Proper citation: All India Institute of Medical Sciences; New Delhi; India (RRID:SCR_011091) Copy
http://www.atr.jp/index_e.html
ATR is a unique private Company established in Kansai region March 1986through the broad support of industrygovernment and academiawith the aim of promoting fundamental and innovative RD activities as well as contributing to society in a wide range of telecommunication fields For the last quarter century since our foundation outstanding research outcomes have been steadily achieved in such fields as neuro/knowledge science intelligent roboticslanguage translation and wireless communication through original and innovative research activities and collaboration work with various universities research institutesand companies within and outside of Japan. Research and development for information and communication technology is indispensable to the formation of safe and secure society as well as a true communication societywhich will provide people with a more satisfying living environment by facilitating human communicationIn addition to continuous efforts in highquality advanced research and developmentwe are determined to focus on the feasibility of broadly applying our research results in society and making them more useful and accessible to a variety of people New Mission * To promote pioneering and innovative research on information and communication-related fields with global collaboration among industry, academia and government * To contribute to a wide variety of welfare of society and humanity by outstanding achievements, and to develop highly-professional human resources * To lead growth of Kansai Science City as a center of excellence in the world
Proper citation: ATR; Kyoto; Japan (RRID:SCR_011102) Copy
Life sciences Institute within University of Cambridge, England. Focuses on the BBSRC strategic objective of research into healthy ageing by understanding basic molecular processes. Benefits from provision of core facilities like imaging, flow cytometry, next generation sequencing, mass spectrometry and small animal facilities. Has tradition of sustained innovation in areas of lipid and calcium signalling, in immunology and in genetics.
Proper citation: Babraham Institute (RRID:SCR_011106) Copy
Colloquially known as Beishida, is a public research university located in Beijing, China, with a strong emphasis on basic disciplines of the humanities and sciences.
Proper citation: Beijing Normal University; Beijing; China (RRID:SCR_011079) Copy
A private nonprofit applied science and technology development company that conducts research and development, designs and manufactures products, and delivers critical services for government and commercial customers. It serves the national security, health and life sciences, and energy and environmental industries.
Proper citation: Battelle Memorial Institute; Ohio; USA (RRID:SCR_011112) Copy
http://sourceforge.net/apps/mediawiki/amos/index.php?title=Hawkeye
A visual analytics tool for genome assembly analysis and validation, designed to aid in identifying and correcting assembly errors.
Proper citation: Hawkeye (RRID:SCR_010982) Copy
Public university in Perth, Western Australia, with campuses also in Singapore and Dubai. It began operations as the state's second university on 25 July 1973, and accepted its first undergraduate students in 1975.
Proper citation: Murdoch University; Perth; Australia (RRID:SCR_011037) Copy
Founded in 1995 with intention of making DNA sequencing and genotyping laboratory to provide DNA sequencing and genotyping services for academic institutions or for private companies.
Proper citation: Laragen (RRID:SCR_010989) Copy
Database of journal information that provides tools to search, sort, filter, compare, and evaluate scholarly journals. In addition to searching by journal name, category or publisher, authors can use title and abstract of paper to discover journals that have already published articles on similar topics. Data sources include major industry data sets, public resources, information submitted directly by journal editors, and real-life publishing experiences submitted by authors.
Proper citation: JournalGuide (RRID:SCR_003236) Copy
An open XML-based language used to describe the formatting of citations and bibliographies. CSL has become the standard way to add citation support to software.
Proper citation: Citation Style Language (RRID:SCR_003234) Copy
http://function.princeton.edu/GOLEM/index.html
THIS RESOURCE IS NO LONGER IN SERVICE, documented July 7, 2017. Welcome to the home of GOLEM: An interactive, graphical gene-ontology visualization, navigation,and analysis tool on the web. GOLEM is a useful tool which allows the viewer to navigate and explore a local portion of the Gene Ontology (GO) hierarchy. Users can also load annotations for various organisms into the ontology in order to search for particular genes, or to limit the display to show only GO terms relevant to a particular organism, or to quickly search for GO terms enriched in a set of query genes. GOLEM is implemented in Java, and is available both for use on the web as an applet, and for download as a JAR package. A brief tutorial on how to use GOLEM is available both online and in the instructions included in the program. We also have a list of links to libraries used to make GOLEM, as well as the various organizations that curate organism annotations to the ontology. GOLEM is available as a .jar package and a macintosh .app for use on- or off- line as a stand-alone package. You will need to have Java (v.1.5 or greater) installed on your system to run GOLEM. Source code (including Eclipse project files) are also available. GOLEM (Gene Ontology Local Exploration Map)is a visualization and analysis tool for focused exploration of the gene ontology graph. GOLEM allows the user to dynamically expand and focus the local graph structure of the gene ontology hierarchy in the neighborhood of any chosen term. It also supports rapid analysis of an input list of genes to find enriched gene ontology terms. The GOLEM application permits the user either to utilize local gene ontology and annotations files in the absence of an Internet connection, or to access the most recent ontology and annotation information from the gene ontology webpage. GOLEM supports global and organism-specific searches by gene ontology term name, gene ontology id and gene name. CONCLUSION: GOLEM is a useful software tool for biologists interested in visualizing the local directed acyclic graph structure of the gene ontology hierarchy and searching for gene ontology terms enriched in genes of interest. It is freely available both as an application and as an applet.
Proper citation: GOLEM An interactive, graphical gene-ontology visualization, navigation, and analysis tool (RRID:SCR_003191) Copy
Data archive of more than 500,000 files of research in the social sciences, hosting 16 specialized collections of data in education, aging, criminal justice, substance abuse, terrorism, and other fields. ICPSR comprises a consortium of about 700 academic institutions and research organizations providing training in data access, curation, and methods of analysis for the social science research community. ICPSR welcomes and encourages deposits of digital data. ICPSR's educational activities include the Summer Program in Quantitative Methods of Social Research external link, a comprehensive curriculum of intensive courses in research design, statistics, data analysis, and social methodology. ICPSR also leads several initiatives that encourage use of data in teaching, particularly for undergraduate instruction. ICPSR-sponsored research focuses on the emerging challenges of digital curation and data science. ICPSR researchers also examine substantive issues related to our collections, with an emphasis on historical demography and the environment.
Proper citation: Inter-university Consortium for Political and Social Research (ICPSR) (RRID:SCR_003194) Copy
A social writing platform, free for education, to easily create a classroom workspace where teacher and students can communicate and work on writing projects alone or in teams. Rich assessment tools give the power to measure student contribution and engagement in real-time. Wikispaces Classroom works great on modern browsers, tablets, and phones. For a fee it is also available to non-educators including companies, organizations, universities, groups, etc.
Proper citation: Wikispaces (RRID:SCR_003228) Copy
http://wiki.solariseclipse.net/PrimerDesigner
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2025. Software program to aid in designing of primers and creation of primer sheets. The program allows users to select a background and enter mutaions. An initial primer is then suggested. User can manipulate the selected primer to add or remove nucleotides from either 5? or 3? ends. A set of parameters reflecting the goodness of the primer is updated on the fly, as the user makes changes. Once happy with the primer, the information is saved in a primer sheet, which can then be uploaded to the BGME lab primer database on the Wiki.
Proper citation: Primer Designer (RRID:SCR_003189) Copy
http://sourceforge.net/projects/salt1/
Software that can accurately and sensitivity classify short reads of next-generation sequencing (NGS) into protein domain families. It is based on profile HMM and a supervised graph contribution algorithm. Compared to existing tools, it has high sensitivity and specificity in classifying short reads into their native domain families.
Proper citation: SALT (RRID:SCR_003187) Copy
http://sourceforge.net/projects/xorro-overlap/
Efficient paired-read overlap software program for use with Illumina sequencing.
Proper citation: XORRO (RRID:SCR_003181) Copy
A software application for such tasks as photo retouching, image composition and image authoring. It has many capabilities such as it can be used as a simple paint program, an expert quality photo retouching program, an online batch processing system, a mass production image renderer, an image format converter, etc. GIMP is expandable and extensible and designed to be augmented with plug-ins and extensions. The advanced scripting interface allows everything from the simplest task to the most complex image manipulation procedures to be easily scripted.
Proper citation: GNU Image Manipulation Program (RRID:SCR_003182) Copy
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