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Public research university in San Diego, California. Founded in 1897 as San Diego Normal School, it is the third-oldest university in the 23-member California State University system.
Proper citation: San Diego State University; California; USA (RRID:SCR_009874) Copy
http://dna.engr.uconn.edu/?page_id=105
Software package that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data.
Proper citation: IsoEM (RRID:SCR_009993) Copy
A research department of the University of York provides research-based information about the effects of health and social care interventions via their databases. The institute undertakes systematic reviews evaluating research evidence on health and public health questions of national and international importance.
Proper citation: Centre for Reviews and Dissemination (RRID:SCR_010267) Copy
http://www.sbg.bio.ic.ac.uk/phyre2
A structure prediction system to reliably detect remote homologies.
Proper citation: Phyre (RRID:SCR_010270) Copy
http://www.biobase-international.com
THIS RESOURCE IS OUT OF SERVICE, documented on February 1st,2022. BIOBASE offers academic and non-profit organizations free access to TRANSFAC?? non-professional version with much reduced functionality and content compared to our professional database.
Proper citation: BIOBASE Corporation (RRID:SCR_010271) Copy
http://code.google.com/p/bitseq/
A software application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions.
Proper citation: BitSeq (RRID:SCR_009904) Copy
Fosters, promotes, and develops the welfare of the wage earners, job seekers, and retirees of the United States; improves working conditions; advances opportunities for profitable employment; and assures work-related benefits and rights.
Proper citation: U.S. Department of Labor (RRID:SCR_010157) Copy
Tools for performing statistical computation including: Clinical Research Calculators Probabilities Distributions Frequency Data Proportions Ordinal Data Correlation & Regression t-Tests & Procedures ANOVA ANCOVA
Proper citation: VassarStats (RRID:SCR_010263) Copy
http://bioen-compbio.bioen.illinois.edu/TrueSight/
Self-training Algorithm for Splice Junction Detection using RNA-seq.
Proper citation: TrueSight (RRID:SCR_009835) Copy
Private university responsible for the medical speciality of surgery throughout Ireland.
Proper citation: Royal College of Surgeons in Ireland; Dublin; Ireland (RRID:SCR_009786) Copy
http://www.kti.admin.ch/index.html?lang=en
Proper citation: Swiss Commission for Technology and Innovation (RRID:SCR_010084) Copy
http://compbio.dfci.harvard.edu/
A computational biology laboratory that builds and redistributes genetic software tools.
Proper citation: Computational Biology and Functional Genomics Laboratory at Harvard (RRID:SCR_010240) Copy
http://hkbic.cuhk.edu.hk/software/abmapper
A portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts.
Proper citation: ABMapper (RRID:SCR_010242) Copy
http://www.gatesfoundation.org/
Foundation to help all people lead healthy, productive lives, this funding and job resource is focused on health, poverty, and opportunity. They work with partner organizations worldwide to tackle critical problems in four program areas. Their Global Development Division works to help the world''s poorest people lift themselves out of hunger and poverty. Their Global Health Division aims to harness advances in science and technology to save lives in developing countries. Their United States Division works to improve U.S. high school and postsecondary education and support vulnerable children and families in Washington State. And their Global Policy & Advocacy Division seeks to build strategic relationships and promote policies that will help advance their work. Our approach to grantmaking in all four areas emphasizes collaboration, innovation, risk-taking, and, most importantly, results. The foundation is unable to make grants directly to individuals. The majority of our funding is proactive and made to U.S. tax-exempt organizations that are independently identified by our staff.
Proper citation: Bill and Melinda Gates Foundation (RRID:SCR_006346) Copy
Funds patient-focused research on gliomas to develop better diagnostics and treatments that lead to long-term survival and a high quality of life for patients with brain tumors. The goal is to decrease the suffering of patients with brain tumors. With an ultimate goal to cure brain cancer, their immediate goal is to improve diagnostics and treatment. They are dedicated to improving the lives of all patients with brain cancer by funding research that they hope will lead to the doubling of life expectancy of patients with brain cancer. Their goal is to do this within the next seven years. Since 2005 they''ve committed more than $50 million to research into brain tumors, with the expectation that this will lead to better diagnostics and therapies. They are dedicated to this search because funding leads to answers, and answers lead to hope.
Proper citation: Ben and Catherine Ivy Foundation (RRID:SCR_006333) Copy
http://vis.stanford.edu/wrangler/
Wrangler is an interactive tool for data cleaning and transformation. Spend less time formatting and more time analyzing your data. Why wrangle? * Too much time is spent manipulating data just to get analysis and visualization tools to read it. Wrangler is designed to accelerate this process: spend less time fighting with your data and more time learning from it. * Wrangler allows interactive transformation of messy, real-world data into the data tables analysis tools expect. Export data for use in Excel, R, Tableau, Protovis, ... * Want to learn more about Wrangler''s design? Take a look at our research paper. * Wrangler is still a work-in-progress. Please share your feedback and feature requests!
Proper citation: DataWrangler (RRID:SCR_006335) Copy
http://megasun.bch.umontreal.ca/People/lartillot/www/
A Bayesian Monte Carlo Markov Chain (MCMC) sampler software for phylogenetic reconstruction. Its main distinguishing feature is the underlying probabilistic model, CAT (Lartillot and Philippe, 2004). CAT is an infinite mixture model accounting for site-specific amino-acid or nucleotide preferences. It is well suited to phylogenomic studies using large multigene alignments.
Proper citation: PhyloBayes (RRID:SCR_006402) Copy
Collegiate research university in Oxford, England. Teaching as early as 1096, making it the oldest university in English speaking world and world second oldest university in continuous operation.
Proper citation: University of Oxford; Oxford; United Kingdom (RRID:SCR_006361) Copy
Public university in Asturias. It is the only university in the region. It has three campus and research centres, located in Oviedo, Gijón and Mieres.
Proper citation: University of Oviedo; Oviedo; Spain (RRID:SCR_006359) Copy
One of the largest universities in Finland, located in the city of Oulu. It was founded on July 8, 1958.
Proper citation: University of Oulu; Oulu; Finland (RRID:SCR_006301) Copy
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