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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Zebrafish Atlas Resource Report Resource Website 1+ mentions |
Zebrafish Atlas (RRID:SCR_006722) | Zebrafish Atlas | atlas, data or information resource, reference atlas | Atlas containing 2- and 3-dimensional, anatomical reference slides of the lifespan of the zebrafish to support research and education worldwide. Hematoxylin and eosin histological slides, at various points in the lifespan of the zebrafish, have been scanned at 40x resolution and are available through a virtual slide viewer. 3D models of the organs are reconstructed from plastic tissue sections of embryo and larvae. The size of the zebrafish, which allows sections to fall conveniently within the dimensions of the common 1 x 3 glass slide, makes it possible for this anatomical atlas to become as high resolution as for any vertebrate. That resolution, together with the integration of histology and organ anatomy, will create unique opportunities for comparisons with both smaller and larger model systems that each have their own strengths in research and educational value. The atlas team is working to allow the site to function as a scaffold for collaborative research and educational activity across disciplines and model organisms. The Zebrafish Atlas was created to answer a community call for a comprehensive, web-based, anatomical and pathological atlas of the zebrafish, which has become one of the most widely used vertebrate animal models globally. The experimental strengths of zebrafish as a model system have made it useful for a wide range of investigations addressing the missions of the NIH and NSF. The Zebrafish Atlas provides reference slides for virtual microscopic viewing of the zebrafish using an Internet browser. Virtual slide technology allows the user to choose their own field of view and magnification, and to consult labeled histological sections of zebrafish. We are planning to include a complete set of embryos, larvae, juveniles, and adults from approximately 25 different ages. Future work will also include a variety of comparisons (e.g. normal vs. mutant, normal vs. diseased, multiple stages of development, zebrafish with other organisms, and different types of cancer)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | embryo, eosin, expression, genetic, adult, anatomical, anatomy, cancer, development, hematoxylin, histological, histology, juvenile, larvae, lifespan, model, slide, sagittal, coronal, transverse, stage, embryonic zebrafish, juvenile zebrafish, immature zebrafish, larval zebrafish, young zebrafish, adult zebrafish | has parent organization: Pennsylvania State University | Normal, Mutant, Cancer | NCRR | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-24352 | SCR_006722 | Penn State Zebrafish Atlas, Zebrafish Atlas - A Lifespan Atlas of the Zebrafish, PSU Zebrafish Atlas | 2026-09-12 01:00:57 | 3 | |||||
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Intramural Research Program Resource Report Resource Website 500+ mentions |
Intramural Research Program (RRID:SCR_012734) | NIA IRP | data or information resource, organization portal, portal | A research program of the NIA which focuses on neuroscience, aging biology, and translational gerontology. The central focus of the program's research is understanding age-related changes in physiology and the ability to adapt to environmental stress, and using that understanding to develop insight about the pathophysiology of age-related diseases. The IRP webpage provides access to other NIH resources such as the Biological Biochemical Image Database, the Bioinformatics Portal, and the Baltimore Longitudinal Study of Aging., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | endocrinology, epidemiology, genetics, behavioral science, biochemistry, biomedical, cancer, cardiology, cell biology, clinical research, cognition, collaboration, gerontology, healthy, hematology, human, immunology, molecular biology, neurobiology, neurogenetics, neuroscience, oncology, osteoarthritis, pathophysiology, physiology, psychology, psychophysiology, research, rheumatology, age-related disease, healthy aging, alzheimer's disease, parkinson's disease, stroke, atherosclerosis, osteoarthritis, diabetes, cancer |
has parent organization: National Institute on Aging is parent organization of: NIA Mouse cDNA Project Home Page is parent organization of: Biological Biochemical Image Database is parent organization of: GERON is parent organization of: Baltimore Longitudinal Study of Aging (BLSA) |
Aging, Age-related disease, Healthy aging, Alzheimer's disease, Parkinson's disease, Atherosclerosis, Osteoarthritis, Cancer, Diabetes, Stroke | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-09468 | SCR_012734 | National Institute on Aging Intramural Research Program, Intramural Research Program in the NIA, Intramural Research Program in the National Institute on Aging, NIA Intramural Research Program, Intramural Research Program of the National Institute on Aging | 2026-09-12 01:01:01 | 919 | |||||
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Southampton Tumour Bank Resource Report Resource Website |
Southampton Tumour Bank (RRID:SCR_000673) | Southampton Tumour Bank | biomaterial supply resource, material resource, tissue bank | Collects and distributes human tissue for ethically approved studies to aid the study of cancer biology and other associated research. All tissue is collected with patient consent and tissue is distributed only to ethically approved studies. The purpose of the Tissue Bank is to source, organize, collect, prepare, store and distribute a diverse collection of human tissues and biological products. This valuable core resource is available to all local academics and researchers. The on-site bank allows for rapid access to a plethora of biological materials supported by an informatics system of databases acting as an inventory management system. In addition, the Tissue Bank provides a licensed facility to store surplus tissue when studies close. Tissues currently available include normal and malignant snap frozen blocks, freshly prepared spleen and lymph nodes, fresh biopsy tissues, blood products and biological fluids. Collections can be organized by bank staff or ran in parallel with current research activities and include a wide variety of cancer classifications. We currently hold over 38,000 vials. Tissue Availability: Lymphoma - solid tissue and cells - 843; Breast - solid tissue and cells - 540; Colon - solid tissue and cells - 238; Lung - solid tissue and cells - 43; Upper Gi - BIOPSY tissue - 114; Pleural fluid and cells - 14 | cancer biology, cancer, tumor, blood product, biological fluid, tissue, spleen, lymph node, biopsy tissue, blood product, bodily fluid, blood, lymphoma, solid tissue, cell, breast, colon, lung, upper gastrointestinal, pleural fluid, gastrointestinal |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Southampton; Southampton; United Kingdom |
Cancer, Tumor, Normal, Malignant | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_14010 | http://www.som.soton.ac.uk/research/facilities/cruk/infrastructure/tumour_bank/default.htm | SCR_000673 | University of Southampton Tumour Bank, University of Southampton Tumor Bank, University of Southampton Cancer Research UK Centre Tumour Bank, Southampton Tumor Bank, Cancer Research UK Centre Tumour Bank, Cancer Research UK Center Tumor Bank | 2026-09-12 01:01:20 | 0 | |||||
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Cancer Gene Index Resource Report Resource Website 1+ mentions |
Cancer Gene Index (RRID:SCR_001117) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on November 17, 2016. A database of genes that have been experimentally associated with human cancer diseases and/or pharmacological compounds, the evidence of these associations, and relevant annotations on the data. | gene, cancer, genetics, pharmacology, disease, database, data |
is listed by: OMICtools has parent organization: National Cancer Institute has parent organization: National Cancer Institute |
Cancer | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01575 | SCR_001117 | 2026-09-12 01:01:21 | 2 | ||||||||
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ASPicDB Resource Report Resource Website 1+ mentions |
ASPicDB (RRID:SCR_002102) | ASPicDB | data or information resource, database | A database to access reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano et al. 2006), and to the functional annotation of predicted isoforms. Users may select and extract specific sets of data related to genes, transcripts and introns fulfilling a combination of user-defined criteria. Several tabular and graphical views of the results are presented, providing a comprehensive assessment of the functional implication of alternative splicing in the gene set under investigation. ASPicDB also includes information on tissue-specific splicing patterns of normal and cancer cells, based on available EST data and their library source annotation. | annotation, splicing pattern, gene, transcript, intron, protein, variant, alternative splicing, splicing, blast, exon, u2, u12, isoform |
is listed by: OMICtools is listed by: SoftCite has parent organization: University of Bari; Bari; Italy |
Normal, Cancer | PMID:21051348 PMID:18388144 |
Free, Freely available | OMICS_01882 | http://srv00.ibbe.cnr.it/ASPicDB/ | SCR_002102 | Alternative Splicing Prediction Data Base, ASPicDB - A Database tool for alternative splicing analysis | 2026-09-12 01:01:24 | 8 | ||||
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UCL Biobank Resource Report Resource Website |
UCL Biobank (RRID:SCR_000517) | UCL Biobank | biomaterial supply resource, material resource | Two University College London (UCL) biobanks, one based at the Royal Free Hospital (RFH) Campus and the other based at Bloomsbury supporting Pathology and the Cancer Institute, will act as physical repositories for collections of biological samples and data from patients consented at UCLH, Partners Hospitals and external sources. This will incorporate collections of existing stored samples and new collections. UCL-RFH BioBank, the physical repository at the Royal Free, presents a unique opportunity to advance medical research through making access to research tissue easier, faster and much more efficient. The BioBank is both a physical repository, with capacity for up to 1 million cryogenically stored samples and a virtual repository for all tissue, cell, plasma, serum, DNA and RNA samples stored throughout UCLP. In particular, samples considered "relevant material", such as tissues and cells, that are licensed by the Human Tissue Authority, can be stored long term. Existing holdings of tissues and cells where appropriate can be transferred to the Physical BioBank at the Royal Free. UCL - Royal Free BioBank provides a flexible approach to banking, allowing the Depositor to pick and choose services that are tailored to fit their requirements. Collaborations arising from publicizing of the existence of the holdings are entirely at the discretion of the depositor, as the facility ensures that access to the deposits remains at the decision of the Depositor/User. UCL Biobank for studying Health and Disease (based at Pathology-Rockefeller building and the UCL-Cancer Institute will support projects principally involved in the study of human disease. The aim is to support primarily, research in the Pathology Department, UCLH and the UCL-Cancer Institute but it will also support other UCLH partners. The biobank will store normal and pathological specimens, surplus to diagnostic requirements, from relevant tissues and bodily fluids. Stored tissues will include; snap-frozen or cryopreserved tissue, formalin-fixed tissue, paraffin-embedded tissues, and slides prepared for histological examination. Tissues will include resection specimens obtained surgically or by needle core biopsy. Bodily fluids will include; whole blood, serum, plasma, urine, cerebrospinal fluid, milk, saliva and buccal smears and cytological specimens such as sputum and cervical smears. Fine needle aspirates obtained from tissues and bodily cavities (e.g. pleura and peritoneum) will also be collected. Where appropriate the biobank will also store separated cells, protein, DNA and RNA isolated from collected tissues and bodily fluids described above. Some of the tissue and aspirated samples will be stored in the diagnostic archive. | tissue, cell, plasma, serum, dna, rna, blood, serum, plasma, urine, cerebral spinal fluid, milk, saliva, buccal smear, sputum, cervical smear, pleura, peritoneum, protein, body fluid, cryopreserved, frozen, snap-frozen, formalin-fixed, paraffin-embedded, slide, cancer, disease, normal |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University College London; London; United Kingdom |
Cancer, Disease, Normal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_36620 | SCR_000517 | Biobanking at UCL | 2026-09-12 01:02:23 | 0 | ||||||
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The Cancer Genome Atlas Resource Report Resource Website 5000+ mentions |
The Cancer Genome Atlas (RRID:SCR_003193) | TCGA | biomaterial supply resource, material resource | Project exploring the spectrum of genomic changes involved in more than 20 types of human cancer that provides a platform for researchers to search, download, and analyze data sets generated. As a pilot project it confirmed that an atlas of changes could be created for specific cancer types. It also showed that a national network of research and technology teams working on distinct but related projects could pool the results of their efforts, create an economy of scale and develop an infrastructure for making the data publicly accessible. Its success committed resources to collect and characterize more than 20 additional tumor types. Components of the TCGA Research Network: * Biospecimen Core Resource (BCR); Tissue samples are carefully cataloged, processed, checked for quality and stored, complete with important medical information about the patient. * Genome Characterization Centers (GCCs); Several technologies will be used to analyze genomic changes involved in cancer. The genomic changes that are identified will be further studied by the Genome Sequencing Centers. * Genome Sequencing Centers (GSCs); High-throughput Genome Sequencing Centers will identify the changes in DNA sequences that are associated with specific types of cancer. * Proteome Characterization Centers (PCCs); The centers, a component of NCI's Clinical Proteomic Tumor Analysis Consortium, will ascertain and analyze the total proteomic content of a subset of TCGA samples. * Data Coordinating Center (DCC); The information that is generated by TCGA will be centrally managed at the DCC and entered into the TCGA Data Portal and Cancer Genomics Hub as it becomes available. Centralization of data facilitates data transfer between the network and the research community, and makes data analysis more efficient. The DCC manages the TCGA Data Portal. * Cancer Genomics Hub (CGHub); Lower level sequence data will be deposited into a secure repository. This database stores cancer genome sequences and alignments. * Genome Data Analysis Centers (GDACs) - Immense amounts of data from array and second-generation sequencing technologies must be integrated across thousands of samples. These centers will provide novel informatics tools to the entire research community to facilitate broader use of TCGA data. TCGA is actively developing a network of collaborators who are able to provide samples that are collected retrospectively (tissues that had already been collected and stored) or prospectively (tissues that will be collected in the future). | genome, genome sequencing, breast, central nervous system, endocrine, gastrointestinal, gynecologic, head, neck, hematologic, skin, soft tissue, thoracic, urologic, clinical, genomic characterization, analysis, tumor genome, demographic, gene expression, copy number alteration, epigenetic, dna sequence, exome, snp, methylation, mrna, mirna, FASEB list |
is used by: Mutation Annotation and Genomic Interpretation is used by: BioXpress is used by: cancerRxTissue is listed by: One Mind Biospecimen Bank Listing is related to: Cancer3D is related to: Cancer Research Data Commons is related to: CancerMIRNome is related to: Broad Institute Genomics Platform has parent organization: National Cancer Institute works with: FireBrowse |
Cancer, Tumor, Normal, Breast cancer, Central Nervous System cancer, Endocrine cancer, Gastrointestinal cancer, Gynecologic cancer, Head cancer, Neck cancer, Hematologic cancer, Skin cancer, Soft tissue cancer, Thoracic cancer, Urologic cancer | NCI 261200800001E-12-0-1 | nlx_156913 | SCR_003193 | Cancer Genome Atlas | 2026-09-12 01:02:29 | 7443 | ||||||
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e-Driver Resource Report Resource Website 1+ mentions |
e-Driver (RRID:SCR_002674) | software application, software resource, standalone software | Software tool to identify cancer driver genes based on linear annotations of biological regions such as protein domains.Uses information on three-dimensional structures of mutated proteins to identify specific structural features. Then algorithm analyzes whether these features are enriched in cancer somatic mutations and are candidate driver genes. | Identify cancer driver genes, candidate driver genes, perl, protein, mutated proteins, cancer somatic mutations, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Cancer | PMID:25064568 | Free, Available for download, Freely available | biotools:e-Driver, OMICS_05288 | https://bio.tools/e-Driver | SCR_002674 | 2026-09-12 01:02:29 | 5 | ||||||
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Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders Resource Report Resource Website 1+ mentions |
Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders (RRID:SCR_003282) | Pleiades Promoter Project | biomaterial supply resource, material resource | Project to generate human DNA promoters of less than 4 kb (MiniPromoters) to drive gene expression in defined brain regions of therapeutic interest for diseases such as Alzheimer, Parkinson, Huntington, Amyotrophic Lateral Sclerosis, Multiple Sclerosis, Spinocerebellar Ataxia, Depression, Autism, and Cancer. Project develops and shares tools like human MiniPromoters that drive region- and cell-specific gene expression in the mouse brain, expression constructs, mouse embryonic stem cell lines, and knock-in mice all of which carry brain-specific MiniPromoters. Project is daughter of Genome Canada Project, Atlas of Gene Expression in Mouse Development, within which mouse brain gene expression data have already been gathered. Project team has collaborated with International BioPharma Solutions Ltd., management and communications consulting company specializing in product development and commercialization advice. Project will explore challenging interface between science and journalism with focus on genomics and gene therapy. | Human, DNA, promoter, gene, expression, brain, disorder, therapy |
is listed by: One Mind Biospecimen Bank Listing is related to: CanEuCre is related to: JAX Cre Repository is related to: Recombinase (cre) Activity has parent organization: University of British Columbia; British Columbia; Canada |
Alzheimer, Parkinson, Huntington, Amyotrophic Lateral Sclerosis, Multiple Sclerosis, Spinocerebellar Ataxia, Depression, Autism, Cancer | Child and Family Research Institute ; Genome British Columbia ; Genome Canada ; UBC Institute of Mental Health |
Free, Freely available | nif-0000-01868 | https://plone.bcgsc.ca/project/pleiades-promoter-project | http://www.pleiades.org/ | SCR_003282 | 2026-09-12 01:02:29 | 4 | ||||
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Karolisnka Biobank Resource Report Resource Website |
Karolisnka Biobank (RRID:SCR_004355) | KI Biobank | biomaterial supply resource, material resource | KI Biobank is an accredited core facility offering sample collection services. KI Biobank is located at the Department of Medical Epidemiology and Biostatistics. KI Biobank offer infrastructure for pre analytical sample handling and provide researchers guidance on how samples should be taken and labeled. The processes comprise registration, handling, storage and distribution of samples. KI Biobank also offers DNA-extraction from blood and saliva. In order to insure complete traceability on samples and belonging information all processes are controlled by a Laboratory Information Management System (LIMS). For every new study a contract is established describing the study and the disposition rights. We also help in writing Biobank agreements including multicenteravtal and Material Transfer Agreement. KI Biobank is, according to the Biobank law, responsible for all sample collections handled within the core facility and those that are stored on the departments on KI campus. Clinical sample collections are handled by the Biobank units at the respective hospitals within the Stockholm County Council. Besides the samples that are stored centrally at KI Biobank, KI Biobank is also the administrative biobank for research sample collections at Karolinska Institutet that are stored and administrated at the departments. All research sample collections must be reported to KI Biobank. The following types of sample collections are registered in the biobank; sample collections taken within the regular health care that has been transferred to Karolinska Institutet with an agreement of transfer, samples taken from healthy individuals or other persons out of the regular health care and samples that have been taken abroad. | asthma, lung disease, cancer, cardiac disease, multiple sclerosis, ms, neurological disease, neurological injury, psychiatric disease, twin, dna-extraction |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolinska Institute; Stockholm; Sweden is parent organization of: KI Biobank - Amphetamine dependence is parent organization of: KI Biobank - PAIN is parent organization of: PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden is parent organization of: KI Biobank is parent organization of: KI Biobank - KOL is parent organization of: KI Biobank - SCI is parent organization of: KI Biobank - GEMS is parent organization of: KI Biobank - TBI is parent organization of: KI Biobank - EIMS is parent organization of: KI Biobank - IMSE is parent organization of: KI Biobank - BROAD is parent organization of: KI Biobank - SBP is parent organization of: KI Biobank STAGE-ADHD is parent organization of: KI Biobank - STANLEY is parent organization of: KI Biobank - STAR is parent organization of: KI Biobank - EuroClot is parent organization of: KI Biobank - Economical Behavior is parent organization of: CATSS - Child and Adolescent Twin Study in Sweden is parent organization of: KI Biobank - SATSA is parent organization of: KI Biobank - SALTY is parent organization of: KI Biobank - STAGE is parent organization of: KI Biobank - TwinGene is parent organization of: BIOAIR - BIOmarkers in severe Chronic AIRway Disease is parent organization of: KI Biobank - NOAK is parent organization of: OLIN - Obstructive Lung disease in Northern Sweden is parent organization of: Cancer of the Prostate in Sweden (CAPS) is parent organization of: KI Biobank - CEFALO is parent organization of: ICAP - Integrated analysis of prostate cancer is parent organization of: LIBRO-1: Individualized prediction and prevention of breast cancer is parent organization of: KI Biobank - PROCAP is parent organization of: SCALE - Scandinavian lymphoma etiology is parent organization of: SPSAC - Stockholm PSA Cohort is parent organization of: KI Biobank - Tissue Biobank is parent organization of: KI Biobank - CEFAM is parent organization of: KI Biobank - PAROKRANK is parent organization of: KI Biobank - Sodertaljehjartan is parent organization of: KI Biobank - Parkinson is parent organization of: KI Biobank - EXT is parent organization of: KI Biobank - ALF is parent organization of: KI Biobank - HARMONY is parent organization of: Twin Study of Child and Adolescent Development - TCHAD is parent organization of: SHEEP - Stockholm Heart Epidemiology Program |
Asthma, Lung disease, Cancer, Cardiac disease, Multiple Sclerosis, Neurological disease, Neurological injury, Mental disease, Healthy, Normal control, Twin, Late adult human | nlx_37545 | http://ki.se/ki/jsp/polopoly.jsp?d=9620&l=en | SCR_004355 | Karolinska Institutet Biobank | 2026-09-12 01:02:32 | 0 | ||||||
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Swedish Regional Biobank Resource Report Resource Website |
Swedish Regional Biobank (RRID:SCR_004503) | Swedish RBC | biomaterial supply resource, material resource | To meet the law requirements and regulations of the National Board of the Southern Health Care Region, Region Skane and Lund University agreed to establish a common biobanking center for Southern healthcare region. Regional biobanksrcentrum will develop and maintain systems for quality assurance and integrity protected using biobanks. The Regional Biobank center is responsible for matters relating to the collection, storage and use of samples stored in biobanks in the Southern healthcare region. Regional Biobank center operations consist of: * to promote the use of biobank material is in accordance with legal requirements biobank * to promote integrity protected and safe storage of repository material * to provide information about the biobank law and biobank materials used for individual sample donors, health professionals, researchers and the public * to handle requests for modified consent and desire to destroy or de test * maintaining a current and privacy protected records of repository material in the region * work to the individual''s integrity will be strengthened in relation to research on biobank material. Tissue samples available to other parties, by surrendering, or by sending tissue samples for analysis, requiring the return or destruction, after completion of the analysis. Regional Biobank Centre (RBC) for the southern healthcare region was established in 2004 and was until 2010 in the Oncology Centre. As of January 1, 2011 it is under the management of RBC Labmedicin Skane. | tissue, bodily fluid |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Lund University; Lund; Sweden |
Cancer, Birth defect, Chromosomal abnormality | Application forms should be used by researchers who want access to samples from health care research. The form contains two parts: I. Application for establishment of and access to samples. II. Agreement on release of samples and personal data. | nlx_48758 | SCR_004503 | Swedish Regional Biobank Center Southern Health Care Region, Swedish Regional Biobank Center, Regional Biobank Centre Southern Health Care Region, RBC Southern Health Care Region | 2026-09-12 01:02:33 | 0 | ||||||
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Janus Serum Bank Resource Report Resource Website 1+ mentions |
Janus Serum Bank (RRID:SCR_005885) | Janus Serum Bank | biomaterial supply resource, material resource | The Janus Serum Bank has blood samles from 317 000 Norwegians. The biobank is reserved for cancer research, and is internationally unique regarding size and number of cancer cases. The Janus Serum Bank is a population based biobank reserved for cancer research. The specimens are collected during the period from 1972-2004 and are stored at 25 degrees Celsius. The samples originate from 317 000 persons in Norway who have participated in health studies and also from blood donors in and around Oslo. Today, samples are only collected from earlier donors in the Janus Serum Bank who have developed cancer. The Bank is internationally unique regarding size and number of cancer cases. Annual linkage to the Cancer Registry shows that 52 500 donors are diagnosed with cancer as of December 31, 2009. The main goals of the biobank are to make the material available to cancer researchers over the whole world and deliver quality assured samples and data. The Janus Serum Bank is registered in the Biobank Register (Notification number 737) | blood, cancer |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Cancer Registry of Norway |
Cancer | Public: The main goals of the biobank are to make the material available to cancer researchers over the whole world and deliver quality assured samples and data. | nlx_149448 | SCR_005885 | Janus serumbank | 2026-09-12 01:02:34 | 1 | ||||||
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Cancer Control using Population-based Registries and Biobanks Resource Report Resource Website |
Cancer Control using Population-based Registries and Biobanks (RRID:SCR_004902) | CCPRB | biomaterial supply resource, material resource | CCPRB (Cancer Control using Population-based Registries and Biobanks) is a Network of Excellence project within the sixth framework programme of the European Union. It is aiming at improved control of cancer by facilitating research linking biobanks and cancer registries. The project involves a systematic quality assurance and continuous development of standards and norms for human sample biobanks in Europe, as well as development of improved integrity-protection standards in the handling of sensitive information in connection with biobank-based research. The samples in the biobanks will be used in large-scale cancer research searching for genetic and infectious causes to cancer, in particular in the areas of breast and colorectal cancer and childhood leukemia. Project objectives: * Provide the study base for uniquely large population-based prospective studies on cancer * Define and implement a generally applicable European Quality Standard for Biobanking that will include improved data and specimen standardization, acquisition and analysis, reliable and standardized statistical analysis as well as improved management and co-ordination of European biobanks. * Define and promote the implementation of integrity-proof methods for biobank-based research involving well defined and secure third party code-keeping systems. * Enable large-scale, population-based research on: ** evaluation of cancer treatment and role of molecular markers in treatment selection ** use over-generation registry linkages applied to large biobank cohorts to identify and evaluate genetic predisposition associated with increased cancer risk as well as interactions with common environmental exposures. ** use over-generation registry linkages applied to large biobank cohorts to explore and evaluate intrauterine exposures associated with increased cancer risk ** exploit the power of large population cohorts for design of optimal strategies for cancer prevention and its evaluation. * Establish a Europe-wide network for spreading the awareness of i) the data, samples and knowledge generated European biobank-based research ii) possibilities for future biobank-based research and iii) the best practice quality standards for biobank-based research. | genetic, infectious disease, young human, child, registry, biobank |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Lund University; Lund; Sweden |
Cancer, Breast cancer, Colorectal cancer, Childhood leukemia, Leukemia | European Union FP6 | nlx_87258 | SCR_004902 | CCPRB (Cancer Control using Population-based Registries and Biobanks), Cancer Control using Population-based Registries Biobanks, CCPRB (Cancer Control using Population-based Registries Biobanks), CCPRB - Cancer Control using Population-based Registries and Biobanks | 2026-09-12 01:02:34 | 0 | ||||||
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MethyCancer Resource Report Resource Website 10+ mentions |
MethyCancer (RRID:SCR_013399) | MethyCancer | data or information resource, database | Database to study interplay of DNA methylation, gene expression and cancer that hosts both highly integrated data of DNA methylation, cancer-related gene, mutation and cancer information from public resources, and the CpG Island (CGI) clones derived from our large-scale sequencing. Interconnections between different data types were analyzed and presented. Search tool and graphical MethyView are developed to help users access all the data and data connections and view DNA methylation in context of genomics and genetics data. The search tool and graphical MethyView are developed to help users access all the data and data connections and view DNA methylation in context of genomics and genetics data. As part of the Cancer Epigenomics Project in China, MethyCancer serves as a platform for sharing data and analytical results from the Cancer Genome/Epigenome Project in China with colleagues all over the world. | dna methylation, gene expression, cancer |
is listed by: OMICtools has parent organization: Chinese Academy of Sciences; Beijing; China |
Cancer | PMID:17890243 | OMICS_01842, nif-0000-03120 | http://methycancer.genomics.org.cn | SCR_013399 | database of human DNA Methylation and Cancer | 2026-09-12 01:02:11 | 11 | |||||
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Genomic Data Commons Data Portal (GDC Data Portal) Resource Report Resource Website 10000+ mentions |
Genomic Data Commons Data Portal (GDC Data Portal) (RRID:SCR_014514) | data or information resource, database | A unified data repository of the National Cancer Institute (NCI)'s Genomic Data Commons (GDC) that enables data sharing across cancer genomic studies in support of precision medicine. The GDC supports several cancer genome programs at the NCI Center for Cancer Genomics (CCG), including The Cancer Genome Atlas (TCGA), Therapeutically Applicable Research to Generate Effective Treatments (TARGET), and the Cancer Genome Characterization Initiative (CGCI). The GDC Data Portal provides a platform for efficiently querying and downloading high quality and complete data. The GDC also provides a GDC Data Transfer Tool and a GDC API for programmatic access. | genomics, data repository, portal, cancer, data sharing, cancer genomic studies |
uses: NCBI database of Genotypes and Phenotypes (dbGap) is related to: Cancer Research Data Commons |
Cancer | Public, Available to the research community | r3d100012061 | https://gdc-portal.nci.nih.gov | SCR_014514 | Genomic Data Commons Data Portal, GDC Data Portal | 2026-09-12 01:02:14 | 12118 | ||||||
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Cancer3D Resource Report Resource Website 1+ mentions |
Cancer3D (RRID:SCR_013755) | data or information resource, database | Database that allows for the exploration of cancer on somatic missense mutations from the Cancer Genome Atlas and Cancer Cell Line Encyclopedia. The site maps proteins and mutations using 3D models and is an interface to the algorithms e-Driver and e-Drug allowing for the prediction of novel cancer drivers or drug biomarkers. | database, cancer, somatic missense mutations, e-Driver, e-Drug | is related to: The Cancer Genome Atlas | cancer | HFSP RGP0027/2011; NGMS GM101457 |
PMID:25392415 | free, public | SCR_013755 | 2026-09-12 01:02:13 | 7 | |||||||
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Jackson Laboratory Clinical Knowledgebase Resource Report Resource Website 10+ mentions |
Jackson Laboratory Clinical Knowledgebase (RRID:SCR_014965) | CKB | data or information resource, database | Semi-automated and manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and oncology clinical trials. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. | cancer, database, knowledgebase, clinical trial, clinical, gene, gene annotation, variant annotation, therapy, diagnosis | Cancer | PMID:26772741 | Available to the research community, For educational and research purposes only, Not intended to be used for medical advice/diagnosis or treatment | SCR_014965 | Jackson CKB | 2026-09-12 01:02:15 | 31 | |||||||
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OncoKB Resource Report Resource Website 500+ mentions |
OncoKB (RRID:SCR_014782) | data or information resource, database, portal | Precision oncology knowledge base which contains information about the effects and treatment implications of specific cancer gene alterations. OncoKB contains detailed information about specific alterations in 418 cancer genes. Each variant entry contains biological effect, prevalence, prognostic information, and treatment implications. Information is curated from various sources, such as guidelines from the FDA, ClinicalTrials.gov, and scientific literature by a network of clinical fellows, research fellows, and faculty members at Memorial Sloan Kettering Cancer Center. | oncology, knowledge base, cancer, cancer gene, gene alteration, curation, somatic mutation, FASEB list | Cancer | Public | SCR_014782 | 2026-09-12 01:01:02 | 988 | ||||||||||
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LiGeA Resource Report Resource Website 1+ mentions |
LiGeA (RRID:SCR_015940) | LiGeA | data or information resource, database, portal | Portal provides an easy access to a comprehensive database designed for storing, displaying and annotating gene fusion events detected from NGS data. It can query a database of somatic fusion genes events predicted and annotated starting from paired-end RNA-seq data. | database, portal, gene, fusion, cell, line, somatic, gene, detection, cancer, prediction, annotation, rna, rnaseq | Cancer | Free, Public, Available for download | SCR_015940 | LiGeA: a comprehensive database of human gene fusion events, cancer cell LInes GEne-fusions portAl, LiGeA Portal, LiGeA - a comprehensive database of human gene fusion events | 2026-09-12 01:01:04 | 1 | ||||||||
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Creative Biogene Mitochondria Related Diseases Resource Report Resource Website |
Creative Biogene Mitochondria Related Diseases (RRID:SCR_022080) | data or information resource, organization portal, portal, service resource | Creative Biogene provides comprehensive range of services and products to assist researchers in mitochondrial assays and studies. Service to validate and explore pathogenesis of mitochondria associated diseases and possible interventions. | Mitochondrial dysfunction, mitochondria associated diseases, Creative Biogene, mitochondrial assays, mitochondrial assays services | cancer, diabetes, neurodegeneration, liver diseases, cardiac, kidney, lung | Restricted | SCR_022080 | Mitochondria Related Diseases | 2026-09-12 01:01:11 | 0 |
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