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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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QMSIM Resource Report Resource Website 50+ mentions |
QMSIM (RRID:SCR_013123) | software resource, software application | Software application designed to simulate a wide range of genetic architectures and population structures in livestock. Large scale genotyping data and complex pedigrees can be efficiently simulated. QMSim is a family based simulator, which can also take into account predefined evolutionary features, such as LD, mutation, bottlenecks and expansions. The simulation is basically carried out in two steps: In the first step, a historical population is simulated to establish mutation-drift equilibrium and, in the second step, recent population structures are generated, which can be complex. QMSim allows for a wide range of parameters to be incorporated in the simulation models in order to produce appropriate simulated data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154560, biotools:qmsim | https://bio.tools/qmsim | SCR_013123 | Qtl and Marker SIMulator | 2026-08-01 12:10:53 | 57 | ||||||||
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INSEGT Resource Report Resource Website |
INSEGT (RRID:SCR_013126) | software resource, software application | Software application that constructs feasible haplotype configurations and the corresponding segregation types on pedigrees. the haplotype configuration minimizes recombinations on the pedigree. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, (the standard template library, stl, is used) | is listed by: Genetic Analysis Software | nlx_154412 | SCR_013126 | INference of SEGregation Types PANGAEA | 2026-08-01 12:11:03 | 0 | |||||||||
|
GLFSINGLE/GLFTRIO/GLFMULTIPLES Resource Report Resource Website 1+ mentions |
GLFSINGLE/GLFTRIO/GLFMULTIPLES (RRID:SCR_013128) | software resource, software application | Software application that is a GLF-based variant caller for next-generation sequencing data. It takes one/three/multiple GLF format genotype likelihood files as input and generates a VCF-format set of variant calls as output. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154358 | SCR_013128 | 2026-08-01 12:11:01 | 1 | ||||||||||
|
GGSD Resource Report Resource Website |
GGSD (RRID:SCR_013129) | software resource, software application | Web-based, relational database driven data management software package for the management of large scale genetic studies. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, php, perl, web-based | is listed by: Genetic Analysis Software | nlx_154355 | SCR_013129 | Generic Genetic Studies Database | 2026-08-01 12:10:53 | 0 | |||||||||
|
CHROMSCAN Resource Report Resource Website 1+ mentions |
CHROMSCAN (RRID:SCR_013131) | CHROMSCAN | software resource, software application | A statistical based program for association mapping of disease genes. It utilises the Malecot model and the linkage disequilibrium (LD) map for the candidate region to analyse the genotypes derive from large sample of matched cases and controls. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154272 | SCR_013131 | 2026-08-01 12:11:01 | 2 | |||||||||
|
BOREL Resource Report Resource Website 1+ mentions |
BOREL (RRID:SCR_013135) | software resource, software application | Software application for inference of genealogical relationships from genetic data, including sibship inference. | gene, genetic, genomic, c, unix, (dec-unix/..) |
is listed by: Genetic Analysis Software is related to: PANGAEA |
nlx_154197 | http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml | ftp://ftp.u.washington.edu/pub/user-supported/pangaea/PANGAEA/BOREL | SCR_013135 | 2026-08-01 12:10:53 | 8 | ||||||||
|
GASSOC Resource Report Resource Website 10+ mentions |
GASSOC (RRID:SCR_013136) | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. Software application for statistical methods for disease and genetic marker associations using cases and their parents. These methods include an extension of the transmission/disequilibrium test (TDT) for multiple marker alleles, as well as additional general tests sensitive to associations that depend on dominant or recessive genetic mechanisms. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, sunos, solaris | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154077 | SCR_013136 | Genetic ASSOCiation analysis software for cases and parent | 2026-08-01 12:11:01 | 13 | ||||||||
|
SNPMSTAT Resource Report Resource Website |
SNPMSTAT (RRID:SCR_013339) | SNPMSTAT | software resource, software application | A command-line program for the statistical analysis of SNP-disease association in case-control/cohort/cross-sectional studies with potentially missing genotype data. SNPMStat allows the user to estimate or test SNP effects and SNP-environment interactions by maximizing the (observed-data) likelihood that properly accounts for phase uncertainty, study design and gene-environment dependence. For SNPs without missing data, the program performs the standard association analysis. For typed SNPs with missing data or untyped SNPs, the program performs the maximum-likelihood analysis. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154647 | SCR_013339 | SNP Missing data STATistics | 2026-08-01 12:11:03 | 0 | ||||||||
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MECPM Resource Report Resource Website |
MECPM (RRID:SCR_013341) | MECPM | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154070 | SCR_013341 | Maximum Entropy Conditional Probability Moldeling | 2026-08-01 12:11:03 | 0 | ||||||||
|
MAOS Resource Report Resource Website 10+ mentions |
MAOS (RRID:SCR_013351) | software resource, software application | Software application that implements valid and efficient statistical methods for meta-analysis of genomewide association studies with overlapping subjects. The current release performs logistic regression analysis of individual level data under the additive mode of inheritance. Data from genome-wide association studies are often analyzed jointly for the purposes of combining information from multiple studies of the same disease or comparing results across different disorders. In many instances, the same subjects appear in multiple studies. Failure to account for overlapping subjects can greatly inflate type I error when combining results from multiple studies of the same disease and can drastically reduce power when comparing results across different disorders. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++ | is listed by: Genetic Analysis Software | nlx_154452 | SCR_013351 | Meta-Analysis with Overlapping Subjects | 2026-08-01 12:11:02 | 25 | |||||||||
|
EM-DECODER Resource Report Resource Website 1+ mentions |
EM-DECODER (RRID:SCR_000023) | EM-DECODER | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A haplotype inference program. | gene, genetic, genomic |
is listed by: Genetic Analysis Software has parent organization: Harvard University; Cambridge; United States |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154297 | SCR_000023 | 2026-08-01 12:10:28 | 1 | ||||||||
|
HAPSCOPE Resource Report Resource Website |
HAPSCOPE (RRID:SCR_000838) | HAPSCOPE | software resource, software application | Software application that includes a comprehensive analysis pipeline and a sophisticated visualization tool for analyzing functionally annotated haplotypes. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:12466546 | nlx_154393 | SCR_000838 | 2026-08-01 12:10:33 | 0 | ||||||||
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GENEHUNTER SAD Resource Report Resource Website |
GENEHUNTER SAD (RRID:SCR_000831) | GENEHUNTER SAD | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 6th,2023. Software application with implementation of the Sad statistic, more robust to transmission ratio distortion in the context of allele sharing (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154198 | SCR_000831 | 2026-08-01 12:10:30 | 0 | ||||||||
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COMDS Resource Report Resource Website |
COMDS (RRID:SCR_000832) | COMDS | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30,2022. Software application for combined segregation and linkage analysis, incorporating severity and diathesis. (entry from Genetic Analysis Software) | gene, genetic, genomic, sun fortran, (the command fsplit is needed), unix, sunos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154255 | SCR_000832 | 2026-08-01 12:10:32 | 0 | ||||||||
|
CHAPLIN Resource Report Resource Website 1+ mentions |
CHAPLIN (RRID:SCR_000833) | CHAPLIN | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022.Software application for identifying specific haplotypes or haplotype features that are associated with disease using genotype data from a case-control study. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran90, (cvf 6.6) with imsl routines, ms-windows, (2000/xp) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154266 | SCR_000833 | Case-control HAPLotype INference package | 2026-08-01 12:10:43 | 2 | |||||||
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CRIMAP Resource Report Resource Website 1+ mentions |
CRIMAP (RRID:SCR_000834) | CRIMAP | software resource, software application | Software application for constructing multilocus linkage map (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, xp | is listed by: Genetic Analysis Software | PMID:7750973 | Source code available | nlx_154276 | http://compgen.rutgers.edu/Crimap/ | SCR_000834 | 2026-08-01 12:10:32 | 5 | ||||||
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PEDIGREE-VISUALIZER Resource Report Resource Website |
PEDIGREE-VISUALIZER (RRID:SCR_000842) | PEDIGREE-VISUALIZER | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154521 | SCR_000842 | 2026-08-01 12:10:43 | 0 | |||||||||
|
PEDPHASE Resource Report Resource Website |
PEDPHASE (RRID:SCR_000843) | PEDPHASE | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on August 23,2022. Software application for inferring haplotypes from genotypes on pedigree data (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154525 | SCR_000843 | 2026-08-01 12:10:33 | 0 | ||||||||
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LOCUSMAP Resource Report Resource Website |
LOCUSMAP (RRID:SCR_000840) | LOCUSMAP | software resource, software application | Software package designed for rapid linkage analysis and map construction of loci with a variety of inheritance modes. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 90/95, ms-windows, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154434, biotools:locusmap | https://bio.tools/locusmap | SCR_000840 | 2026-08-01 12:10:33 | 0 | ||||||||
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RHMAPPER Resource Report Resource Website |
RHMAPPER (RRID:SCR_000845) | RHMAPPER | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30, 2022. An interactive software program for radiation hybrid mapping (entry from Genetic Analysis Software) | gene, genetic, genomic, perl | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154576 | SCR_000845 | 2026-08-01 12:10:43 | 0 |
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