Searching across hundreds of databases
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
San Diego State University; California; USA Resource Report Resource Website 1+ mentions |
San Diego State University; California; USA (RRID:SCR_009874) | SDSU | university | Public research university in San Diego, California. Founded in 1897 as San Diego Normal School, it is the third-oldest university in the 23-member California State University system. | is parent organization of: PRINSEQ | nlx_156724, Wikidata:Q913861, ISNI:0000 0001 0790 1491, Crossref funder ID:100007099, grid.263081.e | https://ror.org/0264fdx42 | SCR_009874 | San Diego State University | 2025-02-14 10:31:37 | 1 | ||||||||
|
IsoEM Resource Report Resource Website 10+ mentions |
IsoEM (RRID:SCR_009993) | IsoEM | software resource | Software package that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Connecticut; Connecticut; USA |
biotools:isoem, OMICS_01278 | https://bio.tools/isoem | SCR_009993 | 2025-02-14 10:31:31 | 10 | ||||||||
|
Centre for Reviews and Dissemination Resource Report Resource Website 10+ mentions |
Centre for Reviews and Dissemination (RRID:SCR_010267) | CRD | institution | A research department of the University of York provides research-based information about the effects of health and social care interventions via their databases. The institute undertakes systematic reviews evaluating research evidence on health and public health questions of national and international importance. | evidence review, research review, public health, evidence synthesis, FASEB list | is related to: PROSPERO | National Institute for Health Research UK | Public, Available to the research community | nlx_156926 | http://www.york.ac.uk/ | SCR_010267 | University of York Centre for Reviews and Dissemination | 2025-02-14 10:31:38 | 40 | |||||
|
Phyre Resource Report Resource Website 500+ mentions |
Phyre (RRID:SCR_010270) | algorithm | A structure prediction system to reliably detect remote homologies. | has parent organization: Imperial College London; London; United Kingdom | PMID:19247286 | nlx_156932 | SCR_010270 | Protein Homology/Anology Recognition Engine | 2025-02-14 10:31:38 | 636 | |||||||||
|
BIOBASE Corporation Resource Report Resource Website 100+ mentions |
BIOBASE Corporation (RRID:SCR_010271) | commercial organization | THIS RESOURCE IS OUT OF SERVICE, documented on February 1st,2022. BIOBASE offers academic and non-profit organizations free access to TRANSFAC?? non-professional version with much reduced functionality and content compared to our professional database. | FASEB list |
is related to: Human Gene Mutation Database is parent organization of: Genome Trax is parent organization of: TRANSPATH is parent organization of: Gene Regulation Programs is parent organization of: TRANSCompel is parent organization of: Gene Regulation Databases |
THIS RESOURCE IS OUT OF SERVICE | nlx_156933 | SCR_010271 | 2025-02-14 10:31:33 | 183 | |||||||||
|
BitSeq Resource Report Resource Website 10+ mentions |
BitSeq (RRID:SCR_009904) | BitSeq | software resource | A software application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
DOI:10.1093/bioinformatics/btv483 DOI:10.1093/bioinformatics/bts260 |
OMICS_01269, biotools:bitseq | https://bio.tools/bitseq https://sources.debian.org/src/bitseq/ |
SCR_009904 | 2025-02-14 10:31:37 | 17 | |||||||
|
U.S. Department of Labor Resource Report Resource Website 1+ mentions |
U.S. Department of Labor (RRID:SCR_010157) | DOL | institution | Fosters, promotes, and develops the welfare of the wage earners, job seekers, and retirees of the United States; improves working conditions; advances opportunities for profitable employment; and assures work-related benefits and rights. | grid.420412.1, nlx_151864, ISNI: 0000 0001 2097 824X, Wikidata: Q628807, Crossref funder ID: 100000778 | https://ror.org/05mbkbj54 | SCR_010157 | US Dept. of Labor, US DOL, US Department of Labor, United States Department of Labor | 2025-02-14 10:31:37 | 1 | |||||||||
|
VassarStats Resource Report Resource Website 500+ mentions |
VassarStats (RRID:SCR_010263) | software resource | Tools for performing statistical computation including: Clinical Research Calculators Probabilities Distributions Frequency Data Proportions Ordinal Data Correlation & Regression t-Tests & Procedures ANOVA ANCOVA | has parent organization: Vassar College; New York; USA | nlx_156916 | SCR_010263 | VassarStats: Website for Statistical Computation | 2025-02-14 10:31:38 | 929 | ||||||||||
|
TrueSight Resource Report Resource Website 1+ mentions |
TrueSight (RRID:SCR_009835) | TrueSight | software resource | Self-training Algorithm for Splice Junction Detection using RNA-seq. | is listed by: OMICtools | OMICS_01258 | SCR_009835 | 2025-02-14 10:31:37 | 2 | ||||||||||
|
Royal College of Surgeons in Ireland; Dublin; Ireland Resource Report Resource Website |
Royal College of Surgeons in Ireland; Dublin; Ireland (RRID:SCR_009786) | RCSI | university | Private university responsible for the medical speciality of surgery throughout Ireland. |
is related to: Biomedical Diagnostics Institute is parent organization of: Dublin Brain Bank is parent organization of: EPIGEN |
ISNI:0000 0004 0488 7120, grid.4912.e, nlx_143526, Wikidata:Q1124228 | https://ror.org/01hxy9878 | SCR_009786 | Royal College of Surgeons in Ireland | 2025-02-14 10:31:53 | 0 | ||||||||
|
Swiss Commission for Technology and Innovation Resource Report Resource Website 1+ mentions |
Swiss Commission for Technology and Innovation (RRID:SCR_010084) | CTI | government granting agency | SCR_010084 | Commission for Technology and Innovation CTI, Commission for Technology and Innovation, Swiss Commission for Technology Innovation, Swiss Commission for Technology and Innovation CTI | 2025-02-14 10:31:53 | 1 | ||||||||||||
|
Computational Biology and Functional Genomics Laboratory at Harvard Resource Report Resource Website 100+ mentions |
Computational Biology and Functional Genomics Laboratory at Harvard (RRID:SCR_010240) | software resource | A computational biology laboratory that builds and redistributes genetic software tools. |
has parent organization: Harvard University; Cambridge; United States is parent organization of: GeneSigDB |
nlx_156871 | SCR_010240 | Quackenbush Lab | 2025-02-14 10:31:32 | 221 | ||||||||||
|
ABMapper Resource Report Resource Website 1+ mentions |
ABMapper (RRID:SCR_010242) | ABMapper | software resource | A portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts. | is listed by: OMICtools | OMICS_01238 | SCR_010242 | ABMapper: A suffix-array based spliced alignment tool | 2025-02-14 10:31:38 | 1 | |||||||||
|
Bill and Melinda Gates Foundation Resource Report Resource Website 500+ mentions |
Bill and Melinda Gates Foundation (RRID:SCR_006346) | Gates Foundation | institution | Foundation to help all people lead healthy, productive lives, this funding and job resource is focused on health, poverty, and opportunity. They work with partner organizations worldwide to tackle critical problems in four program areas. Their Global Development Division works to help the world''s poorest people lift themselves out of hunger and poverty. Their Global Health Division aims to harness advances in science and technology to save lives in developing countries. Their United States Division works to improve U.S. high school and postsecondary education and support vulnerable children and families in Washington State. And their Global Policy & Advocacy Division seeks to build strategic relationships and promote policies that will help advance their work. Our approach to grantmaking in all four areas emphasizes collaboration, innovation, risk-taking, and, most importantly, results. The foundation is unable to make grants directly to individuals. The majority of our funding is proactive and made to U.S. tax-exempt organizations that are independently identified by our staff. | development, health, education, grant, science, technology, career, global health, global development, agricultural development, emergency response, family planning, maternal health, neonatal health, child health, nutrition, polio, vaccine, sanitation, hygiene | Enteric disease, Diarrheal disease, HIV, Malaria, Neglected infectious disease, Infectious disease, Pneumonia, Tuberculosis | nlx_152065, ISNI: 0000 0000 8990 8592, grid.418309.7, Crossref funder ID: 100000865, Wikidata: Q655286 | https://ror.org/0456r8d26 | SCR_006346 | Bill & Melinda Gates Foundation | 2025-02-14 10:30:44 | 775 | |||||||
|
Ben and Catherine Ivy Foundation Resource Report Resource Website 1+ mentions |
Ben and Catherine Ivy Foundation (RRID:SCR_006333) | Ivy Foundation | funding resource | Funds patient-focused research on gliomas to develop better diagnostics and treatments that lead to long-term survival and a high quality of life for patients with brain tumors. The goal is to decrease the suffering of patients with brain tumors. With an ultimate goal to cure brain cancer, their immediate goal is to improve diagnostics and treatment. They are dedicated to improving the lives of all patients with brain cancer by funding research that they hope will lead to the doubling of life expectancy of patients with brain cancer. Their goal is to do this within the next seven years. Since 2005 they''ve committed more than $50 million to research into brain tumors, with the expectation that this will lead to better diagnostics and therapies. They are dedicated to this search because funding leads to answers, and answers lead to hope. | glioma, research, brain, tumor, brain tumor, diagnostic, treatment | Brain cancer, Cancer | nlx_152043 | SCR_006333 | 2025-02-14 10:30:43 | 2 | |||||||||
|
DataWrangler Resource Report Resource Website 1+ mentions |
DataWrangler (RRID:SCR_006335) | Wrangler | service resource | Wrangler is an interactive tool for data cleaning and transformation. Spend less time formatting and more time analyzing your data. Why wrangle? * Too much time is spent manipulating data just to get analysis and visualization tools to read it. Wrangler is designed to accelerate this process: spend less time fighting with your data and more time learning from it. * Wrangler allows interactive transformation of messy, real-world data into the data tables analysis tools expect. Export data for use in Excel, R, Tableau, Protovis, ... * Want to learn more about Wrangler''s design? Take a look at our research paper. * Wrangler is still a work-in-progress. Please share your feedback and feature requests! | has parent organization: Stanford University; Stanford; California | nif-0000-06730 | SCR_006335 | 2025-02-14 10:30:43 | 3 | ||||||||||
|
PhyloBayes Resource Report Resource Website 100+ mentions |
PhyloBayes (RRID:SCR_006402) | PhyloBayes | software resource | A Bayesian Monte Carlo Markov Chain (MCMC) sampler software for phylogenetic reconstruction. Its main distinguishing feature is the underlying probabilistic model, CAT (Lartillot and Philippe, 2004). CAT is an infinite mixture model accounting for site-specific amino-acid or nucleotide preferences. It is well suited to phylogenomic studies using large multigene alignments. | phylogenomic, multigene alignment, alignment, reconstruction |
is listed by: OMICtools has parent organization: University of Montreal; Quebec; Canada |
PMID:24318999 | Free, Public | OMICS_02212 | SCR_006402 | PhyloBayes - phylogenetic reconstruction using infinite mixtures | 2025-02-14 10:30:46 | 470 | ||||||
|
University of Oxford; Oxford; United Kingdom Resource Report Resource Website 1+ mentions |
University of Oxford; Oxford; United Kingdom (RRID:SCR_006361) | Oxford | university | Collegiate research university in Oxford, England. Teaching as early as 1096, making it the oldest university in English speaking world and world second oldest university in continuous operation. |
uses: ShareLaTeX uses: Overleaf uses: ReadCube uses: Sparrho uses: Writefull uses: LabArchives uses: Bioz is related to: Medical Research Council Harwell: An International Centre for Mouse Genetics is related to: European Gram Negative AntiBacterial Engine is related to: Kinetics for Drug Discovery is related to: Kidney Health Initiative is related to: READNA is related to: ONE Study is related to: European Management Platform for Emerging and Re-Emerging Infectious Disease Entities (EMPERIE) is related to: ShareLaTeX is related to: LabArchives is related to: Center for Expanded Data Annotation and Retrieval is parent organization of: University of Oxford Labs and Facilities is parent organization of: WTCHG Genome Scan Viewer is parent organization of: NeuroHub: the information environment for Neuroscientists is parent organization of: bioDBcore is parent organization of: FSL is parent organization of: Wellcome Trust Centre for Human Genetics is parent organization of: Structural Genomics Consortium is parent organization of: FAIRsharing is parent organization of: PeaKDEck is parent organization of: CiTO - the Citation Typing Ontology is parent organization of: Brain Bank for Autism is parent organization of: Oxford Science Blog is parent organization of: Oxford Centre for Functional MRI of the Brain is parent organization of: JISC Open Citations is parent organization of: Open Provenance Model Vocabulary is parent organization of: Computational Genomics Analysis Tools is parent organization of: Alpha-7 Database is parent organization of: FMRIB Software Library is parent organization of: PairsDB is parent organization of: RNA Virus Database is parent organization of: Cellular Open Resource is parent organization of: DTU is parent organization of: Bioinformatics and Statistical Genetics is parent organization of: elk-reasoner is parent organization of: CGDB is parent organization of: Potassium Channel Database is parent organization of: Oxford Central Proteomics Facility is parent organization of: Colwiz is parent organization of: myExperiment is parent organization of: ISA Infrastructure for Managing Experimental Metadata is parent organization of: EMIF is parent organization of: CPFP is parent organization of: IonChannelGenealogy is parent organization of: Orthologous and Paralogous Transcripts in Clades is parent organization of: HomeoDB is parent organization of: Open Trials is parent organization of: OVAL is parent organization of: easyGV is parent organization of: iHOMA2 is parent organization of: microC is parent organization of: University of Oxford Computational Biology Research Group Core Facility is parent organization of: University of Oxford Medical Sciences Division Computational Genomics: Analysis and Training Core Facility is parent organization of: ARGON is parent organization of: FAIRassist.org |
Crossref funder ID:501100000769, Wikidata:Q34433, ISNI:0000 0004 1936 8948, grid.4991.5, nlx_59631 | https://ror.org/052gg0110 | SCR_006361 | Oxford University | 2025-02-14 10:30:45 | 5 | ||||||||
|
University of Oviedo; Oviedo; Spain Resource Report Resource Website 1+ mentions |
University of Oviedo; Oviedo; Spain (RRID:SCR_006359) | university | Public university in Asturias. It is the only university in the region. It has three campus and research centres, located in Oviedo, Gijón and Mieres. |
is parent organization of: Mammalian Degradome Database is parent organization of: Human Hereditary Diseases of Proteolysis is parent organization of: Ancillary Domains Associated With Human and Mouse Proteases |
nlx_53766, ISNI:0000 0001 2164 6351, grid.10863.3c, Wikidata:Q2303432, Crossref funder ID:501100006382 | https://ror.org/006gksa02 | SCR_006359 | 2025-02-14 10:30:44 | 1 | ||||||||||
|
University of Oulu; Oulu; Finland Resource Report Resource Website |
University of Oulu; Oulu; Finland (RRID:SCR_006301) | university | One of the largest universities in Finland, located in the city of Oulu. It was founded on July 8, 1958. | Wikidata:Q1357517, nlx_60067, grid.10858.34, Crossref funder ID:501100006196, ISNI:0000 0001 0941 4873 | https://ror.org/03yj89h83 | SCR_006301 | 2025-02-14 10:30:42 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
