Tools   Select Another Resource Report Type

https://github.com/nickFurlotte/pylmm

A Python package for doing linear mixed model associations in genome wide association studies (GWAS). The software corrects for population structure using EMMA.

Proper citation: pyLMM (RRID:SCR_014525) Copy   

•   Source: SciCrunch Registry

http://www.starrlifesciences.com/products/vitalview-software

A data acquisition and analysis software program. The program collects data from sensors and receivers and displays graphical data analysis as well as descriptive statistics.

Proper citation: VitalView Software (RRID:SCR_014497) Copy   

•   Source: SciCrunch Registry

https://ndar.nih.gov/tools_guid_tool.html

A customized software application that generates a Global Unique Identifier for each study participant. The GUID is a universal subject ID that allows researchers to share data specific to a study participant without exposing personally identifiable information (PII). The GUID has been approved by the NIH Office of General Counsel.

Proper citation: GUID Tool (RRID:SCR_014530) Copy   

•   Source: SciCrunch Registry

https://www.qut.edu.au/research/research-projects/landmark-biobanks

A repository of human tissue samples collected during the LANDMark study (Longitudinal Assessment of Neuropathy in Diabetes using novel ophthalmic markers). The LANDMark Biobank longitudinal dataset contains blood and tissue (skin) samples and matching detailed phenotypic data of three microvascluar complications of type 1 diabetes: neuropathy, nephropathy and retinopathy.

Proper citation: LANDMark BioBanks (RRID:SCR_014534) Copy   

•   Source: SciCrunch Registry

http://www.exploranova.com/products/mercator/

A software package for quantification of histological sections. This software performs functions including: management and analysis of regions of interest, annotations, statistical analysis, and 3D visualization. These results are edited in an Excel-compatible spreadsheet.

Proper citation: Mercator (RRID:SCR_014493) Copy   

•   Source: SciCrunch Registry

http://www.imagemagick.org/script/index.php

Software suite for creating, editing, composing, and converting bitmap images. It can read and write images in over 200 formats including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. The user can use this software to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves.

Proper citation: ImageMagick (RRID:SCR_014491) Copy   

•   Source: SciCrunch Registry

http://www.pubatlas.org

A program that searches PubMed to generate a heat map using a user's search terms. It also allows you to see over the years how many publications there are with the user's search term(s).

Proper citation: pubatlas.org (RRID:SCR_014538) Copy   

•   Source: SciCrunch Registry

http://nirx.net/software/

Commercial software tool designed to function as a multiplatform instrument controlling environment for NIRx products. Its features include the ability to run full or partial sensing configurations, montage views and viewing options, and a real-time system status reporting display.

Proper citation: NIRStar (RRID:SCR_014540) Copy   

•   Source: SciCrunch Registry

https://www.ecnp.eu/projects-initiatives/ECNP-networks/List-ECNP-Networks/Preclinical-Data-Forum.aspx

A forum for preclinical data sharing and interpretation to enhance its utility for clinical research and development. The forum allows researchers to communicate and collaborate on modern preclinical issues and data sharing.

Proper citation: Preclinical Data Forum Network (RRID:SCR_014545) Copy   

•   Source: SciCrunch Registry

http://www.celllineauthentication.com/

A material analysis service of the commercial organization Genetica DNA Laboratories which provides authentication of human cancer cell lines, stem cell lines and xenografts utilizing STR DNA technology.

Proper citation: Cell Line Authentication Testing (RRID:SCR_014504) Copy   

•   Source: SciCrunch Registry

http://www.igsn.org

A persistent unique identifier for samples and specimens collected from the natural environment. IGSNs are created by the user and are case sensitive. They should be concise, machine readable, and non-derivable to ensure originality. IGSNs were created and are organized by the IGSN e.V., whose goal is to implement and promote standard methods for locating, identifying, and citing physical samples with confidence by operating an international IGSN registration service with a distributed infrastructure for use by and benefit to its members.

Proper citation: International Geo Sample Number (RRID:SCR_014505) Copy   

•   Source: SciCrunch Registry

http://zhanglab.ccmb.med.umich.edu/I-TASSER/

Web server as integrated platform for automated protein structure and function prediction. Used for protein 3D structure prediction. Resource for automated protein structure prediction and structure-based function annotation.

Proper citation: I-TASSER (RRID:SCR_014627) Copy   

•   Source: SciCrunch Registry

http://www.vsni.co.uk/products/genstat/

A statistical software which can be used for basic statistics, experimental design, sample size calculations, and analysis of linear mixed models, time series, and spatial analysis.

Proper citation: GenStat (RRID:SCR_014595) Copy   

•   Source: SciCrunch Registry

https://www.thermofisher.com/us/en/home/technical-resources/software-downloads/applied-biosystems-7500-real-time-pcr-system.html

A software used to control and operate the Applied Biosystems 7500 Real-Time PCR system.

Proper citation: 7500 Real-Time PCR Software (RRID:SCR_014596) Copy   

•   Source: SciCrunch Registry

http://chemistry.unt.edu/~verbeck/LIMS/Manuals/XCAL_Quant.pdf

A software which acquires and processes data sets, primarily through the Xcalibur system.

Proper citation: Thermo Xcalibur (RRID:SCR_014593) Copy   

•   Source: SciCrunch Registry

http://cole-trapnell-lab.github.io/cufflinks/cuffmerge/

Software tool for transcriptome assembly and differential expression analysis for RNA-Seq. Includes script called cuffmerge that can be used to merge together several Cufflinks assemblies. It also handles running Cuffcompare as well as automatically filtering a number of transfrags that are likely to be artifacts. If the researcher has a reference GTF file, the researcher can provide it to the script to more effectively merge novel isoforms and maximize overall assembly quality.

Proper citation: Cufflinks (RRID:SCR_014597) Copy   

•   Source: SciCrunch Registry

http://cyberinncorp.com/SigmaGel.htm

Gel analysis software which can be used on a PC with TWAIN-compatible scanners without specialty equipment. Users scan or load an image which can then be calibrated. SigmaGel allows users to make lane measurements, spot measurements, and molecular weight measurements. After data analysis was completed, users can print or copy and paste data and images.

Proper citation: SigmaGel Software (RRID:SCR_014598) Copy   

•   Source: SciCrunch Registry

http://www.cbn-atl.org/research/stopwatch.shtml

A software which tracks the number of occurrences and duration of up to 16 defined events. The user can group events together so that turning on one event in a group will automatically turn off other active events in the group. Sessions can end after a fixed length of time, or the sessions can be ended manually, At the end of the session, the data can be saved in a comma-delimited file which can be easily imported into a spreadsheet application.

Proper citation: Stopwatch+ (RRID:SCR_014591) Copy   

•   Source: SciCrunch Registry

http://statplus-mac.en.softonic.com/mac

A statistical data analysis tool that works with Microsoft Excel and is designed especially for use in IOS systems. Tutorials and examples are provided within the program.

Proper citation: StatPlus Mac (RRID:SCR_014635) Copy   

•   Source: SciCrunch Registry

http://www6.appliedbiosystems.com/support/software/copycaller/CopyCallerUserGuide.pdf

A software for analyzing real-time PCR data and quantifying DNA targets. It can perform copy number analysis, report confidence in copy number, display data in table and graphic format, change analysis parameters, and view data analysis information for multiple experiments at once.

Proper citation: CopyCaller (RRID:SCR_014486) Copy   

•   Source: SciCrunch Registry