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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Dualsystems Biotech AG Resource Report Resource Website 1+ mentions |
Dualsystems Biotech AG (RRID:SCR_013522) | commercial organization, antibody supplier, reagent supplier, material resource | An Antibody supplier | nlx_152348 | SCR_013522 | 2026-08-08 12:00:12 | 7 | ||||||||||||
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ENIGMA Resource Report Resource Website 100+ mentions |
ENIGMA (RRID:SCR_013400) | software resource, software application, data analysis software, data processing software | A software tool to extract gene expression modules from perturbational microarray data, based on the use of combinatorial statistics and graph-based clustering. The modules are further characterized by incorporating other data types, e.g. GO annotation, protein interactions and transcription factor binding information, and by suggesting regulators that might have an effect on the expression of (some of) the genes in the module. Version : ENIGMA 1.1 used GO annotation version : Aug 29th 2007 | genome, gene, genetic software, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Ghent University; Ghent; Belgium is parent organization of: ENIGMA-DTI Pipeline |
PMID:18402676 | biotools:enigma, nlx_144365 | https://bio.tools/enigma | SCR_013400 | 2026-08-08 12:00:10 | 133 | ||||||||
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Meridian Life Science Resource Report Resource Website |
Meridian Life Science (RRID:SCR_013369) | commercial organization, antibody supplier, reagent supplier, material resource | An Antibody supplier | nlx_152410 | SCR_013369 | Meridian Life Science inc. | 2026-08-08 11:59:55 | 0 | |||||||||||
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MabTag GmbH Resource Report Resource Website 10+ mentions |
MabTag GmbH (RRID:SCR_013405) | commercial organization, antibody supplier, reagent supplier, material resource | An Antibody supplier | nlx_152402 | SCR_013405 | MabTag | 2026-08-08 11:59:56 | 37 | |||||||||||
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Diagnostic Consulting Network Resource Report Resource Website |
Diagnostic Consulting Network (RRID:SCR_013525) | commercial organization, antibody supplier, reagent supplier, material resource | An Antibody supplier | nlx_152345 | SCR_013525 | Diagnostic Consulting Network (DCN) | 2026-08-08 11:59:57 | 0 | |||||||||||
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DSHB Resource Report Resource Website 5000+ mentions |
DSHB (RRID:SCR_013527) | institution | An antibody supplier which banks and distributes hybridomas and monoclonal antibodies for use in research. The bank includes antibodies against targets such as GFP, transcription factors, stem cells, and human. | antibody supplier, hybridoma, monoclonal, bank, developmental studies | is hosted by: University of Iowa; Iowa; USA | NICHD | Available to the research community, Acknowledgement requested | nlx_152343, grid.482683.3 | https://ror.org/006cer819 | SCR_013527 | Developmental Studies Hybridoma Bank, Developmental Studies Hybridoma Bank at the University of Iowa | 2026-08-08 12:00:22 | 5649 | ||||||
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Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers Resource Report Resource Website 1+ mentions |
Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers (RRID:SCR_013409) | PCS | software resource | A stand-alone package to identify and analyze conserved k-mers in pairwise alignment. This program shows high performance for identifying miRNA seed binding sites in 3''-UTRs. | perl, perl script, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Tsinghua University; Beijing; China |
biotools:pcs, nlx_33020 | https://bio.tools/pcs | http://bioinfo.au.tsinghua.edu.cn/member/~gujin/pcs/ | SCR_013409 | Pairwise Conservation Scores | 2026-08-08 12:00:21 | 3 | ||||||
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ArrayOligoSelector Resource Report Resource Website 10+ mentions |
ArrayOligoSelector (RRID:SCR_013494) | ArrayOligoSelector | software resource | Software program to systematically design gene specific long oligonucleotide probes for entire genomes, for the purpose of developing whole genome microarrays. For each open reading frame, the program optimizes the oligo selection based upon several parameters, including uniqueness in the genome, sequence complexity, lack of self-binding, GC content and proximity to the 3''end of the gene. |
is listed by: OMICtools has parent organization: University of California at San Francisco; California; USA has parent organization: SourceForge |
PMID:12620119 | Free, Public, Commercial requires license, Use of the blat or gfclient options requires license | OMICS_00826 | SCR_013494 | 2026-08-08 12:00:22 | 13 | ||||||||
|
Engineering and Physical Sciences Research Council Resource Report Resource Website 10+ mentions |
Engineering and Physical Sciences Research Council (RRID:SCR_013495) | EPSRC | institution | EPSRC is the main UK government agency for funding research and training in engineering and the physical sciences, investing more than £850 million a year in a broad range of subjects from mathematics to materials science, and from information technology to structural engineering. We support research into engineering, mathematics, physics, chemistry, materials science, information and communications technologies. EPSRC is a non-departmental public body funded by the UK government through the Department for Universities, Innovation and Skills. We employ around 300 staff in Swindon. We manage our portfolio through programmes. Research base programmes focus on investigator-led research and training. Business innovation programmes deliver our priority research themes and maximise the economic and social impact of the research and training we fund. | ISNI: 0000 0004 0394 8681, Wikidata: Q5377871, Crossref funder ID: 501100000266, grid.421091.f, nlx_10253 | https://ror.org/0439y7842 | SCR_013495 | UK EPSRC | 2026-08-08 11:59:56 | 27 | |||||||||
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Dako Resource Report Resource Website 10000+ mentions |
Dako (RRID:SCR_013530) | commercial organization, antibody supplier, reagent supplier, material resource | An Antibody supplier; Dako was purchased by Agilent in 2012 and several years later the websites began to reflect the Dako products as part of the Agilent catalog. | is organization facet of: Agilent Technologies | nlx_152339 | SCR_013530 | Dako inc | 2026-08-08 12:00:22 | 19372 | ||||||||||
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ARP American Research Products Resource Report Resource Website 1+ mentions |
ARP American Research Products (RRID:SCR_013533) | ARP | commercial organization, antibody supplier, reagent supplier, material resource | An Antibody supplier | nlx_152280 | SCR_013533 | ARP American Research Products Inc, ARP American Research Products Inc. | 2026-08-08 11:59:57 | 1 | ||||||||||
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Functional Glycomics Research Resource Report Resource Website 100+ mentions |
Functional Glycomics Research (RRID:SCR_013337) | data or information resource, portal, topical portal | This Gateway is a collaboration between the Consortium for Functional Glycomics (CFG) and Nature Publishing Group (NPG), providing a comprehensive resource for functional glycomics research. Use this site to stay up-to-date on glycomics news, request CFG resources, and search databases of glycan-binding proteins, glycan structures, and glycosyltransferases. The Functional Glycomics Update provides a one-stop overview of the latest research in glycobiology for specialists and non-specialists alike. It is updated monthly to bring you the latest news and selected highlights from Nature journals. In addition, it will provide two featured articles a month on the most relevant advances in the field published in NPG and other top journals. By collating new articles into a key worded research library, we hope to provide a continuously updated and broad overview of the field. Sponsor. The CFG is a large international research initiative funded by NIGMS to elucidate the roles of carbohydrate-protein interactions in cell communication at the cell surface. | FASEB list |
has parent organization: Nature Publishing Group has parent organization: Scripps Research Institute |
nif-0000-30382 | SCR_013337 | Functional Glycomics | 2026-08-08 12:00:10 | 256 | |||||||||
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pTARGET Resource Report Resource Website 100+ mentions |
pTARGET (RRID:SCR_013458) | pTARGET | data or information resource, production service resource, data set, data analysis service, analysis service resource, service resource | pTARGET is a computational method to predict the subcellular localization of only eukaryotic proteins from animal species that include fungi and metazoans. Predictions are carried out based on the occurrence patterns of protein functional domains and the amino acid compositional differences in proteins from different subcellular locations. This method can predict proteins targeted to nine distinct subcellular locations that include cytoplasm, endoplasmic reticulum, extracellular/secreted, Golgi, lysosomes, mitochondria, nucleus, peroxysomes and plasma membrane. Current predictions are based on Pfam database version 19.0. Datasets used for developing pTarget method are available., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | FASEB list | has parent organization: University at Albany; New York; USA | State University of New York at Albany startup funds ; University of California Life Sciences Informatics L99-10077 |
PMID:16844995 PMID:16144808 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_18589 | http://bioapps.rit.albany.edu/pTARGET/ | SCR_013458 | pTARGET: Prediction server for protein subcellular localization | 2026-08-08 12:00:11 | 118 | ||||
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ImmuQuest Resource Report Resource Website 10+ mentions |
ImmuQuest (RRID:SCR_013461) | commercial organization, antibody supplier, reagent supplier, material resource | An Antibody supplier | nlx_152390 | SCR_013461 | ImmuQuest Ltd. | 2026-08-08 12:00:22 | 30 | |||||||||||
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AS Diagnostik Resource Report Resource Website |
AS Diagnostik (RRID:SCR_013343) | commercial organization, antibody supplier, reagent supplier, material resource |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017.\\\\\\ \\\\\\ An Antibody supplier |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152281 | SCR_013343 | 2026-08-08 12:00:21 | 0 | |||||||||||
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BioIE: Extracting Informative Sentences From the Biomedical Literature Resource Report Resource Website 1+ mentions |
BioIE: Extracting Informative Sentences From the Biomedical Literature (RRID:SCR_013464) | database, data or information resource, software resource, software toolkit | BioIE is a rule-based system that extracts informative sentences relating to protein families, their structures, functions and diseases from the biomedical literature. Based on manual definition of templates and rules, it aims at precise sentence extraction rather than wide recall. After uploading source text or retrieving abstracts from MEDLINE, users can extract sentences based on predefined or user-defined template categories. BioIE also provides a brief insight into the syntactic and semantic context of the source-text by looking at word, N-gram and MeSH-term distributions. Important Applications of BioIE are in, for example, annotation of microarray data and of protein databases. | family, function, biomedical, context, disease, distribution, literature, medline interfaces, mesh-term, microarray, n-gram, protein, semantic, structure, syntactic | has parent organization: University of Manchester; Manchester; United Kingdom | nif-0000-21055 | SCR_013464 | BioIE | 2026-08-08 11:59:56 | 2 | |||||||||
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Coordination and sustainability of international mouse informatics resources Resource Report Resource Website 1+ mentions |
Coordination and sustainability of international mouse informatics resources (RRID:SCR_013345) | data or information resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 2, 2022. Much of the current effort in functional genomics, and our understanding of the biology of human disease, is underpinned by informatics infrastructures served by the scattered collection of relevant databases which exists in Europe. This infrastructure is essential for the support of a European Research Area in mouse functional genomics. CASIMIR, a coordination action of the 6th Framework Programme of the European Commission, will focus on co-ordination and integration of databases set up in support of FP5 and FP6 projects containing experimental data, including sequences, and material resources such as biological collections, relevant to the use of the mouse as a model organism for human disease. Interoperability of disseminated databases potentially provides enormous synergy in the provision, integration and analysis of a wide range of data with concomitant added value for research projects. Having set standards and benchmarks the proposed action will then reach out to co-ordinate other European and International databases and consult with the Community. EU FlagThe CASIMIR project is funded by the European Commission within its FP6 Programme, under the thematic area Life sciences, genomics and biotechnology for health, contract number LSHG-CT-2006-037811 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00366 | SCR_013345 | CASIMIR | 2026-08-08 11:59:55 | 4 | ||||||||||
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R/FEST Resource Report Resource Website 1+ mentions |
R/FEST (RRID:SCR_013347) | software resource, software application | An R package for simulations and likelihood calculations of pair-wise family relationships using DNA marker data. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154111, SCR_000830, nlx_154582 | SCR_013347 | FEST | 2026-08-08 12:00:10 | 2 | |||||||||
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TreeView Resource Report Resource Website 1000+ mentions |
TreeView (RRID:SCR_013503) | TreeView | software resource | Software to graphically browse results of clustering and other analyses from Cluster. |
is listed by: OMICtools is listed by: Debian is listed by: SoftCite has parent organization: University of California at Berkeley; Berkeley; USA |
DOI:10.1093/bioinformatics/bth349 | OMICS_01574 | https://sources.debian.org/src/treeview/ | SCR_013503 | 2026-08-08 12:00:11 | 2754 | ||||||||
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EISEN LAB Resource Report Resource Website 100+ mentions |
EISEN LAB (RRID:SCR_013508) | data or information resource, portal, organization portal, laboratory portal | Welcome to Michael Eisens lab in the Howard Hughes Medical Institute (HHMI) at University of California at Berkeley (UCB) and the Lawrence Berkeley National Lab (LBNL). We are part of the Department of Molecular and Cell Biology of UCB and the Genomics Division of LBNL, and the. We are located in Stanley Hall on the Berkeley campus.Our lab applies computational and experimental genomic approaches to study how genome sequences specify organismal form and function. We are particularly interested in the regulation of gene expression, and focus on how the information that specifies when and where genes are expressed is encoded in genome sequences, the role that regulated gene expression plays in animal development and the response of microbes to their environments, and how variation in and evolution of gene expression contributes to phenotypic variation and the remarkable diversity of life on Earth. This site contains a more detailed description of our research projects, an introduction to members of the lab, reprints of all of our publications, free downloadable and web-based software. Sponsor. Experimental work described here was supported by a Howard Hughes Medical Institute Investigator award to MBE and by National Institutes of Health (NIH) grant GM704403 to MBE and MDB. Computational analyses were supported in by NIH grant HG002779 to MBE. Work at Lawrence Berkeley National Laboratory was conducted under Department of Energy contract DE-AC02-05CH11231. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. | has parent organization: University of California at Berkeley; Berkeley; USA | nif-0000-30508 | http://rana.lbl.gov/EisenSoftware.htm | SCR_013508 | EISEN LAB | 2026-08-08 11:59:57 | 143 |
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