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https://www.minitab.com/en-us/products/minitab/
A statistical software package that allows the user to import data, create graphs, and perform statistical analysis. It can perform basic statistical tests like descriptive statistics, hypothesis tests, confidence intervals, and normality tests as well as regression and ANOVA and quality assessment.
Proper citation: Minitab (RRID:SCR_014483) Copy
https://www.bdbiosciences.com/documents/15_cellquest_prosoft_analysis.pdf
A software for acquiring and analyzing flow cytometry data. The user can create plots with elements like regions, gates, statistics, markers, and annotated text. The software can also be used for batch analysis or quality control of analysis. Results can be exported and saved., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: BD CellQuest Pro (RRID:SCR_014489) Copy
http://www.evolution.rdg.ac.uk/BayesTraits.html
A computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available. It incorporates earlier programs including Multistate, Discrete and Continuous. BayesTraits can be applied to the analysis of traits that adopt a discrete number of states, or to the analysis of continuously varying traits. Hypotheses can be tested about models of evolution, ancestral states and correlations among pairs of traits., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: BayesTraits (RRID:SCR_014487) Copy
http://www.scied.com/pr_cmbas.htm
A software system to assist with cloning simulation, enzyme operations, and graphic map drawing. Clone Manager can also be used as a way to view or edit sequence files, find open reading frames, translate genes, or find genes or text in files. Clone Manager Professional is an upgraded version of Clone Manager Basic., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: Clone Manager Software (RRID:SCR_014521) Copy
http://aleasol.ch/cms/index.php/clickjoint.en.html
A software for analyzing animal movement on videos and images. The user can define the animal's joints so the software can analyze using a tracking algorithm.
Proper citation: Clickjoint (RRID:SCR_014482) Copy
http://hmpdacc.org/resources/tools_protocols.php
A tool used to screen for core gene sets as an indicator of completeness of draft genomes. The download includes a Perl script and required archaeal and bacterial core genes fasta and cluster files.
Proper citation: Core Gene Evaluation Script (RRID:SCR_014604) Copy
https://sourceforge.net/projects/invue/
An API and software suite for large scale data visualization and analysis.
Proper citation: inVUE (RRID:SCR_014608) Copy
A SEED-quality automated service that annotates complete or nearly complete bacterial and archaeal genomes across the entire phylogenetic tree. RAST can also be used to analyze draft genomes.
Proper citation: RAST Server (RRID:SCR_014606) Copy
http://www.med-associates.com/product-category/video-software/
Automation software used to analyze fear behavior in rodents. Freezing is represented in the data file in several different ways, including the total time the subject spends motionless during the session, the percent of time motionless, the number of freezing episodes or occurrences, or as an average index of motion.
Proper citation: Med Associates Video Freeze Software (RRID:SCR_014574) Copy
https://www.deshawresearch.com/resources_desmond.html
Software designed to perform high-speed molecular dynamic simulations of biological systems on conventional commodity clusters, supercomputers and GPUs. This code uses novel parallel algorithms and numerical techniques to achieve high performance and accuracy on platforms with a large number of processors. It can be used with a single computer.
Proper citation: Desmond (RRID:SCR_014575) Copy
http://www.brainsimagebank.ac.uk
A searchable collection of anonymised images and associated clinical data. It includes normal individuals at all ages (from prenatal to old age). The image bank contains integrated data sets already collected as part of research studies which include control subjects. New data is added as they become available.
Proper citation: BRAINS Imagebank (RRID:SCR_014576) Copy
https://www.licor.com/bio/products/imaging_systems/odyssey/
A data analysis software developed to simplify and record data from fluorescent related assays such as Western Blots, EMSAs, and Western Assays. This software will consolidate all of the resulting data into one easy-to-track image, and thus removes the need for multiple exposures, as well as standardizing the resulting fluorescent bands without image saturation, blowout, or removed sensitivity. Odyssey CLx is capable of scanning multiple mini-blots, microplates, or slides at the same time.
Proper citation: Odyssey CLx (RRID:SCR_014579) Copy
http://biocore.github.io/SitePainter/
An interactive data visualization tool which allows users to create and upload pictures of their study site, load diversity analyses, and display both diversity and taxonomy results in a spatial context.
Proper citation: SitePainter (RRID:SCR_014618) Copy
http://aem.asm.org/content/71/12/8228.full
THIS RESOURCE IS NO LONGER IN SERVICE, documented Setember 8, 2016. A suite of tools for the comparison of microbial communities using phylogenetic information. It takes as input a single phylogenetic tree that contains sequences derived from at least two different environmental samples and a file describing which sequences came from which sample.
Proper citation: Unifrac (RRID:SCR_014616) Copy
http://www.imb.sinica.edu.tw/core/publicfacilities/pdf/LAS-1000plus_om_e_ver2.pdf
A software which is used to control the LAS-1000plus luminescent image analyzer. This software adjusts the focus, exposure time, sensitivity, and cooling temperature, and will record the data after the sample is scanned.
Proper citation: Image Reader LAS-1000 (RRID:SCR_014585) Copy
https://www.edaq.com/ES280_PowerChrom-Software
THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19, 2022. A software which collects, displays, and analyzes chromatographic signals. This software doesn't require any programming, and collects signals from one or two detectors. PowerChrom is supplied as part of the PowerChrom system, or separately for use with e-corder recording systems.
Proper citation: PowerChrom (RRID:SCR_014588) Copy
http://www.cbcb.umd.edu/software/metapath
A statistical package for comparing metagenomic data-sets at the pathway level. It relies on a combination of metagenomic sequence data and prior metabolic pathway knowledge, which is pulled from KEGG.
Proper citation: Metapath (RRID:SCR_014621) Copy
A programming library that uses standard graphics cards to produce 2D and 3D visual stimuli for vision research experiments.
Proper citation: Vision Egg (RRID:SCR_014589) Copy
A public–private initiative that supports research that provides evidence on the biological validity of therapeutic targets and that gain insight into the effectiveness of pharmacological intervention. It aims to provide a research and development framework that applies human disease. It shares its information openly.
Proper citation: Open Targets (RRID:SCR_014622) Copy
http://sea.rice.edu/sites/g/files/bxs231/f/Using%20the%20Axioskop%20Details%20Guide%20061413_0.pdf
THIS RESOURCE IS NO LONGER IN SERVCE, documented January 19, 2022. Software used to control the Zeiss Axioskop microscope.
Proper citation: Zeiss Axioskop Software (RRID:SCR_014587) Copy
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