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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Tool for Tumor Progression Resource Report Resource Website 1+ mentions |
Tool for Tumor Progression (RRID:SCR_014700) | TTP | software resource, software application, simulation software | Software used to simulate tumor progression in various stages of growth in order to study the process' dynamics. The input can be fitness landscape, mutation rate, and cell division time. The output is growth dynamics and other relevant statistics, such as expected tumor detection time and expected appearance time of surviving mutants. The tool is implemented in Java and runs on all operating systems which run a Java Virtual Machine (JVM) of version 1.7 or above. | tumor, tumor progression, cancer, simulation, simulation software, tumor dynamics, tumor growth | Cancer | Available for download, Necessary libraries are included in the file | SCR_014700 | Tool for Tumor Progression (TTP) | 2026-08-08 12:00:34 | 1 | ||||||||
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Australian Data Archive Resource Report Resource Website 1+ mentions |
Australian Data Archive (RRID:SCR_014706) | storage service resource, data repository, service resource | A consortium of leading national Australian universities which collects and preserves digital research data and makes these data available for secondary analysis. The consortium provides a data catalogue comprised of seven sub-archives: Social Science, HIstorical, Indigenous, Longitudinal, Qualitative, Crime and Justice, and International. All users can browse and search the catalogue, view study and variable documentation, and download related material. Registered users can also analyze and visualize most data online and users who have completed the relevant undertaking form(s) can download entire studies or subsets of variables. Deposited data are processed, reviewed, and published for research use. | data archive, data catalogue, australia, digital research data |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Available to the research community | DOI:10.26193, DOI:10.17616/R3DS3K, DOI:10.25504/FAIRsharing.sN8d9i | https://doi.org/10.26193, https://dx.doi.org/10.26193, http://doi.org/10.17616/R3DS3K, https://fairsharing.org/10.25504/FAIRsharing.sN8d9i | SCR_014706 | 2026-08-08 12:00:29 | 9 | ||||||||
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NMRbox Resource Report Resource Website 50+ mentions |
NMRbox (RRID:SCR_014827) | web application, software resource, software toolkit | Computing platform for biomolecular NMR available to not-for-profit or government users. It consists of a virtual machine (VM) provisioned with dozens of widely-used NMR software packages, and is available as a cloud-based Platform-as-a-Service (PaaS) or as a downloadable VM for local execution. | Nuclear Magnetic Resonance, nmr, spectra, computing platform, platform, virtual machine, cloud, software toolbox | NIGMS P41GM111135 | Account required | SCR_014827 | , Nuclear Magnetic Resonance box, NMRbox.org | 2026-08-08 12:00:35 | 92 | |||||||||
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Webulous Resource Report Resource Website 1+ mentions |
Webulous (RRID:SCR_014825) | web application, software resource | Server used to create spreadsheets with ontology based data validations. Webulous can process populated templates and transform them into OWL/RDF using design patterns expressed in OPPL. It also has an add-on with Google spreadsheets which supports loading templates from a Webulous server and allows users to submit populated spreadsheets back to the Webulous server for transformation into OWL. | server, ontology, data validation, owl, spreadsheet | Available for installation | SCR_014825 | 2026-08-08 12:00:30 | 2 | |||||||||||
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Hierarchical Clustering Resource Report Resource Website 1+ mentions |
Hierarchical Clustering (RRID:SCR_014673) | software resource, software application, source code, data analysis software, data processing software | R documentation for hierarchical cluster analysis on a set of dissimilarities for n objects. Each object is assigned to its own cluster, which an algorithm proceeds through iteratively. Two of the most similar clusters are joined at each stage until there is a single cluster. Distances between clusters are recomputed at each stage by the Lance–Williams dissimilarity update formula according to the particular clustering method being used. Clustering methods include: Ward's minimum variance method, complete linkage method, and single linkage method. | statistical analysis, statistical analysis package, r, r package, data analysis, software, cluster, hierarchical, dissimilarity, clustering method, metabolomics | is listed by: Metabolomics Workbench | Acknowledgement requested | SCR_014673 | R: Hierarchical Clustering, R - Hierarchical Clustering | 2026-08-08 12:00:28 | 4 | |||||||||
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Zeitzeiger Resource Report Resource Website 10+ mentions |
Zeitzeiger (RRID:SCR_014791) | data acquisition software, software resource, software application, data processing software | R package for regularized supervised learning on high-dimensional data from an oscillatory system. Zeitzeiger can quantify rhythmic behavior, make accurate predictions, identify major patterns and important features, and detect when the oscillator is perturbed. | r, data acquisition software, rhythm, behavior, predict, oscillatory system, high dimensional data, regularized supervised learning | Available for download | SCR_014791 | ZeitZeiger | 2026-08-08 12:00:30 | 13 | ||||||||||
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Principal Components Analysis Resource Report Resource Website 10+ mentions |
Principal Components Analysis (RRID:SCR_014676) | software resource, software application, source code, data analysis software, data processing software | R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp. | statistical analysis, statistical analysis package, r, r package, principal component analysis, data matrix, prcomp, metabolomics | is listed by: Metabolomics Workbench | SCR_014676 | 2026-08-08 12:00:15 | 17 | |||||||||||
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Xperiment Resource Report Resource Website 1+ mentions |
Xperiment (RRID:SCR_014712) | data acquisition software, software resource, software application, mobile application, data analysis software, data processing software | Mobile software application for behavioral social science experiments on an online platform. It can be used on computers, tablets, and smartphones. It is hardware independent, does not require online connectivity to perform a test, and has the option of interfacing with outside sensors, such as heart rate or weighting scales. | mobile, application, portable, behavioral science, online, social science | Free for the academic community, Fee for commercial organization | SCR_014712 | 2026-08-08 12:00:34 | 3 | |||||||||||
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DeviumWeb Resource Report Resource Website 10+ mentions |
DeviumWeb (RRID:SCR_014683) | software toolkit, software resource, software application, data analysis software, data visualization software, data processing software | A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis. | metabolomics, metabolomics tool, data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis, visualization, principal component analysis, predictive modeling, biochemical pathway analysis | is listed by: Metabolomics Workbench | Subscription required, 30-day demo available | http://dgrapov.github.io/DeviumWeb/ | SCR_014683 | 2026-08-08 12:00:28 | 12 | |||||||||
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Pennsylvania State University SLEIC Resource Report Resource Website 1+ mentions |
Pennsylvania State University SLEIC (RRID:SCR_014922) | PSU SLEIC | access service resource, service resource | Imaging center dedicated to fostering research in the social, behavioral, biological, engineering, and materials sciences where imaging methodologies play a central role. The SLEIC provides the Penn State research community with instrumentation, technological and substantive expertise, educational opportunities, and financial support for conducting magnetic resonance imaging (MRI) and electrophysiology (EEG, ERP) experiments. | access service resource, imaging center, imaging, social science, behavioral science, engineering, material science, biological science | is hosted by: Pennsylvania State University | PMID:27993674 | Available to affiliated researchers | SCR_014922 | Pennsylvania State University Social Life and Engineering Imaging Center, Penn State SLEIC | 2026-08-08 12:00:36 | 1 | |||||||
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SPEX2 Resource Report Resource Website 1+ mentions |
SPEX2 (RRID:SCR_014923) | sequence analysis software, software resource, software application, data analysis software, data processing software | Automatic software program for profiling spatial gene expression patterns from Fly embryo ISH images. It utilizes image-based genome-scale profiling of whole-body mRNA patterns. | software, spatial gene expression, fly, embryo, extraction, mrna, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Carnegie Mellon University; Pennsylvania; USA |
PMID:20529936 | biotools:spex2 | https://bio.tools/spex2 | SCR_014923 | 2026-08-08 12:00:18 | 1 | ||||||||
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GVKBIO databases Resource Report Resource Website 1+ mentions |
GVKBIO databases (RRID:SCR_014893) | web application, database, data or information resource, software resource | Collection of databases with standalone databases, which gives opportunity for customers to integrate the data into their internal tools and databases, as well as online databases, that are available to the customers from a dedicated website where an individual can query and export the data in the selected format. The standalone database topics include medicinal chemistry, drugs and target class based compounds. The online databases are comprised of three major compilations: GVK BIO Online Structure Activity Relation Database (GOSTAR), GVK BIO Biomarker Database (GOBIOM), and Clinical Trial Outcome Database (CTOD). | research, database, online, standalone, medicinal chemistry, drug, clinical, toxicity, biomarker, contract research organization, cro | Commercial | SCR_014893 | GVK Biosciences, GVK BIO | 2026-08-08 12:00:18 | 3 | ||||||||||
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DOGMA Resource Report Resource Website 100+ mentions |
DOGMA (RRID:SCR_015060) | web application, software resource | Web-based annotation tool for plant chloroplasts and animal mitochondrial genomes. DOGMA allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes. | chloroplast, mitochondria, genome annotation, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian |
PMID:15180927 | Freely available | biotools:DOGMA | https://bio.tools/DOGMA | SCR_015060 | Dual Organellar GenoMe Annotator, Dual Organellar GenoMe Annotator (DOGMA) | 2026-08-08 12:00:34 | 428 | ||||||
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Michigan Diabetes Research Center Resource Report Resource Website 1+ mentions |
Michigan Diabetes Research Center (RRID:SCR_015112) | MDRC | core facility, access service resource, service resource | Multidisciplinary unit of the University of Michigan funded by the National Institute of Diabetes and Digestive and Kidney Diseases/National Institute of Health. Promotes new discoveries and enhance scientific progress through the support of basic and clinical research related to diabetes, its complications, and related disorders. Creates environment that supports innovative research; attracts and retains early stage investigators and investigators new to diabetes research; provides core services that leverage funding and unique expertise; fosters interdisciplinary collaborations; raises awareness and interest in fundamental and clinical diabetes research at their institutions, as well as locally, regionally, and nationally. | clinical diabetes research, multidisciplinary research, endocrine and metabolic disorders, |
is listed by: NIDDK Information Network (dkNET) has organization facet: Michigan Diabetes Research Center Administrative Core Facility has organization facet: Michigan Diabetes Research Center Clinical Core Facility has organization facet: Michigan Diabetes Research Center Microscopy and Image Analysis Core Facility has organization facet: Michigan Diabetes Research Center Molecular Genetics Core Facility has organization facet: Michigan Diabetes Research Center Animal Studies Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK020572 | Restricted | http://diabetesresearch.med.umich.edu | SCR_015112 | Michigan Diabetes Research Center (MDRC) | 2026-08-08 12:00:38 | 4 | |||||
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ToxAlert Resource Report Resource Website 1+ mentions |
ToxAlert (RRID:SCR_014907) | software resource | Software tool for high-throughput toxicity prediction; it assists in the early and quick identification of toxic drug candidates. ToxAlert provides probability percentages for different toxicity endpoints such as oncogenicity, mutagenicity, teratogenicity, neurotoxicity or cell toxicity. | toxicity prediction, modeling, oncogenicity, mutagenicity, teratogenicity, neurotoxicity, cell toxicity | Commercial | SCR_014907 | 2026-08-08 12:00:36 | 2 | |||||||||||
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Online Resource for Community Annotation of Eukaryotes Resource Report Resource Website 10+ mentions |
Online Resource for Community Annotation of Eukaryotes (RRID:SCR_014989) | OrcAE, ORCAE | wiki, data or information resource, narrative resource | Online genome annotation tool for validating and correcting gene annotations. OrcAE is community-driven and can be edited by account-holders in the research community. | genome annotation, gene validation, community driven, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Bioinformatics Gent has parent organization: Ghent University; Ghent; Belgium has parent organization: VIB; Flanders; Belgium |
PMID:23132114 | Free, Account required, The research community can contribute to this resource | biotools:orcae | https://bio.tools/orcae | SCR_014989 | Online Resource for Community Annotation of Eukaryotes (OrcAE) | 2026-08-08 12:00:32 | 17 | |||||
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LTQ-Orbitrap Fusion Tribrid Mass Spectrometer Resource Report Resource Website 1+ mentions |
LTQ-Orbitrap Fusion Tribrid Mass Spectrometer (RRID:SCR_014992) | Mass spectrometer that combines quadrupole, ion trap, and Orbitrap mass analysis. | mass spectrometer, quadrupole, ion trap, orbitrap, thermofisher scientific, proteomic, compound | Available for purchase, Commercially available | SCR_014992 | Orbitrap Fusion Tribrid Mass Spectrometer | 2026-08-08 12:00:32 | 9 | |||||||||||
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MedCalc Resource Report Resource Website 10000+ mentions |
MedCalc (RRID:SCR_015044) | software resource, software application, data analysis software, data processing software | Statistical software for ROC curve analysis. MedCalc performs several statistical tests such as method comparison, method evaluation, reference intervals, and meta-analysis. | statistic, statistical analysis, roc curve, reference software | is listed by: SoftCite | Commercially available, Available for purchase, Trial available | SCR_015044 | 2026-08-08 12:00:21 | 19712 | ||||||||||
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Nikon: Eclipse FN1 Microscope Resource Report Resource Website 1+ mentions |
Nikon: Eclipse FN1 Microscope (RRID:SCR_014995) | instrument resource | Fixed-stage microscope for electrophysiological research. Features include open design, noise reduction, 16x objective lens, and water dipping objective with depth induced aberration correction. | microscope, electrophysiology, fixed-stage, nikon, hardware, instrument, equipment, USEDit | is listed by: USEDit | Commercially available, Available for purchase | https://drive.google.com/file/d/1doal81AS1pADxa06FHxhIM9lgZye2wvv/view?usp=drivesdk | https://downloads.microscope.healthcare.nikon.com/phase4/literature/Brochures/Fn1-2CE-MRQH-8.pdf | SCR_014995 | Eclipse FN1 | 2026-08-08 12:00:32 | 8 | |||||||
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Agilent: 2200 TapeStation Instrument Resource Report Resource Website 10+ mentions |
Agilent: 2200 TapeStation Instrument (RRID:SCR_014994) | instrument resource | Hardware system which automates RNA, DNA, and protein sample QC, including sample loading, separation, and imaging. | rna, dna, protein sample qc, quality control, agilent, hardware, instrument, equipment, USEDit | https://drive.google.com/file/d/1E6jznqjHFiDbbTFiJ1ccNsZnhp_YzD5s/view?usp=drivesdk | https://www.agilent.com/cs/library/usermanuals/public/G2964-90000_TapeStation_USR_ENU.pdf | http://www.genomics.agilent.com/en/TapeStation-System/2200-TapeStation-Instrument/?cid=AG-PT-181&tabId=AG-PR-1004 | SCR_014994 | Agilent 2200 TapeStation, Agilent 2200 TapeStation system | 2026-08-08 12:00:20 | 19 |
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