Tools   Select Another Resource Report Type

http://busco.ezlab.org/

Software tool to quantitatively measure genome assembly and annotation completeness based on evolutionarily informed expectations of gene content.

Proper citation: BUSCO (RRID:SCR_015008) Copy   

•   Source: SciCrunch Registry

http://tgrc.ucdavis.edu/

Genebank of wild relatives, monogenic mutants and miscellaneous genetic stocks of tomato. TGRC offers seed samples for free to researchers worldwide.

Proper citation: C.M. Rick Tomato Genetic Resources Center (RRID:SCR_014954) Copy   

•   Source: SciCrunch Registry

http://www.stavroX.com

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Software tool for analyzing cross-linking/mass spectrometry datasets using any bifunctional cross-linker. It can be used to identify cross links of peptides – such as DSS, BS3, Disulfides, and zero-length – in complex mixtures.

Proper citation: StavroX (RRID:SCR_014957) Copy   

•   Source: SciCrunch Registry

http://www.vtk.org

Cross-platform visualization software system for 3D computer graphics, image processing, and data visualization. Various visualization algorithms and advanced modeling techniques are supported within VTK, as well as parallel processing and interoperability with select databases.

Proper citation: VTK (RRID:SCR_015013) Copy   

•   Source: SciCrunch Registry

http://ldak.org/

Software that analyzes and estimates heritability. LDAK adjusts for linkage disequilibrium (LD) by calculating SNP weightings which downweight the contribution of SNPs in highly tagged regions.

Proper citation: LDAK (RRID:SCR_015504) Copy   

•   Source: SciCrunch Registry

https://sourceforge.net/projects/giira/

Gene prediction method that identifies potential coding regions based on the mapping of reads from an RNA-Seq experiment.

Proper citation: GIIRA (RRID:SCR_015507) Copy   

•   Source: SciCrunch Registry

https://clinicalstudydatarequest.com/Default.aspx

Consortium of clinical study data providers. Its aim is to help the data sharing community drive scientific progress and improve medical care by facilitating access to patient-level data from clinical studies.

Proper citation: ClinicalStudyDataRequest.com (CSDR) (RRID:SCR_015512) Copy   

•   Source: SciCrunch Registry

https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/scripts/projects/magicblast/

Software tool for making a BLAST database from various data structures. It maps large sets of next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.

Proper citation: MagicBlast (RRID:SCR_015513) Copy   

•   Source: SciCrunch Registry

http://mmpc.ucdavis.edu/index.php

Center that provides the scientific community with metabolic and physiologic phenotyping tests, services, and procedures for mouse models of diabetes, diabetic complications, obesity and related disorders in order to advance medical and biological research.

Proper citation: MMPC-University of California Davis (RRID:SCR_015357) Copy   

•   Source: SciCrunch Registry

http://norc.pbrc.edu

Research center that supports clinical investigation addressing the etiology of nutritionally induced chronic diseases across the entire age span, from gestational and perinatal development through childhood and adolescence. It provides core services to promote the investigations around the theme of molecular mechanisms of nutritional programming induced by environmental factors.

Proper citation: Pennington Biomedical Research Center Nutrition and Obesity Research Center (RRID:SCR_015438) Copy   

•   Source: SciCrunch Registry

http://mmoc.med.umich.edu

Research center for obesity investigators which aims to provide researchers with infrastructure, expertise, and training to facilitate improved data integration, analysis and modeling from properly designed basic, clinical, and population-based studies in obesity and metabolism-related diseases.

Proper citation: University of Michigan Nutrition and Obesity Research Center (RRID:SCR_015457) Copy   

•   Source: SciCrunch Registry

http://www.uab.edu/medicine/hrfdcc/

Center that focuses on understanding the causes of Cystic Kidney Disease and other related disorder and the development of new therapeutic strategies.

Proper citation: UAB Hepatorenal Fibrocystic Diseases Core Center (RRID:SCR_015311) Copy   

•   Source: SciCrunch Registry

http://www.baltimorepkdcenter.org/

Center for research in polycystic kidney disease (PKD) with collaboration by international investigators. The center has several cores, including biomedical cores for antibody validation and cell cultures, educationa programs, and pilot programs for new projects.

Proper citation: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center (RRID:SCR_015315) Copy   

•   Source: SciCrunch Registry

https://www.niddk.nih.gov/research-funding/research-programs/kidney-disease-centers

Research program whose aim is to make state-of-the art technologies and resources accessible to a broad spectrum of investigators pursuing studies in kidney research areas.

Proper citation: O'Brien Kidney Centers (RRID:SCR_015270) Copy   

•   Source: SciCrunch Registry

https://www.keyence.co.jp/products/microscope/fluorescence-microscope/bz-9000/models/bz-9000/

Microscope system performs fluorescence, bright-field and phase-contrast imaging on various specimen holders. The system allows users to switch between four fluorescent channels, automatically adjusting the filter and exposure time while preserving the longevity of the specimen.

Proper citation: BZ 9000 Fluorescence Microscope (RRID:SCR_015486) Copy   

•   Source: SciCrunch Registry

http://statcheck.io/

Statistical checking software for psychology manuscripts. Users can upload APA-formatted PDF or HTML files to find errors in statistical reporting.

Proper citation: StatCheck (RRID:SCR_015487) Copy   

•   Source: SciCrunch Registry

http://ilastik.org/

Tool for interactive image classification, segmentation and analysis, built as a modular software framework, which currently has workflows for automated (supervised) pixel- and object-level classification, automated and semi-automated object tracking, semi-automated segmentation and object counting without detection.

Proper citation: Ilastik (RRID:SCR_015246) Copy   

•   Source: SciCrunch Registry

http://spectrumlabs.com/

Commercial organization which supplies products for bioseparation and cell line management.

Proper citation: Spectrum Labs (RRID:SCR_015488) Copy   

•   Source: SciCrunch Registry

http://depts.washington.edu/diabetes/

University-affiliated center to support both basic and clinical research in diabetes and related metabolic disorders with the ultimate purpose of translating findings into opportunities to prevent these diseases and to improve clinical care and outcomes.

Proper citation: University of Washington Diabetes Research Center (RRID:SCR_015126) Copy   

•   Source: SciCrunch Registry

http://tlife.fudan.edu.cn/ltr_finder/

Web software capable of scanning large-scale sequences for full-length LTR retrotranspsons., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: LTR_Finder (RRID:SCR_015247) Copy   

•   Source: SciCrunch Registry