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http://www.ufl.edu/

Public research university in Gainesville, Florida, United States. Member of state university system of Florida with undergraduate and graduate programs in arts and sciences.

Proper citation: University of Florida; Florida; USA (RRID:SCR_000145) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ms-spectre/

Software that provides (Quantitiave) analysis of multiple ls-ms(ms) runs, using mzXML import of raw data coming from spectrometers.

Proper citation: MS-Spectre (RRID:SCR_000266) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/GEOquery.html

Software that establishes a bridge between GEO and BioConductor.

Proper citation: GEOquery (RRID:SCR_000146) Copy   

•   Source: SciCrunch Registry

http://www.uca.edu.ar/index.php/home/index/es

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 10th,2023. Private medical school in Buenos Aires that offers degree programs in the medical sciences. Resource is in Spanish.

Proper citation: Pontifical Catholic University of Argentina School of Medical Sciences; Buenos Aires; Argentina (RRID:SCR_000264) Copy   

•   Source: SciCrunch Registry

http://www.nauka.gov.pl/en/

Polish governmental agency that administers governmental activities in science and higher education. Funding is provided by the state for scientific research.

Proper citation: Polish Ministry of Science and Higher Education (RRID:SCR_000251) Copy   

•   Source: SciCrunch Registry

http://www.upc.edu/?set_language=en

A public research university in Spain which specializes in the fields of architecture, engineering and technology at the undergraduate, graduate and postdoctoral level. UPC focuses heavily on internationalization, this is demonstrated through their large population of international PhD and master's degree students. They are a member of the Top Industrial Managers for Europe network and several university federations, including the Conference of European Schools for Advanced Engineering Education and Research (CESAER).

Proper citation: Polytechnic University of Catalonia; Barcelona; Spain (RRID:SCR_000252) Copy   

•   Source: SciCrunch Registry

https://www.upv.es/

A technical university in Spain which offers degree programs in 14 different faculties, including business administration, computer science and industrial engineering at the undergraduate, graduate and postdoctoral level. The school has five different campuses.

Proper citation: Polytechnic University of Valencia; Valencia; Spain (RRID:SCR_000255) Copy   

•   Source: SciCrunch Registry

http://www.upf.edu/en/

Public university in Spain that offers programs in social sciences and humanities, health and life sciences, international training in communication and communication sciences. Has colleges based on topics such as law, translation and interpretation, and engineering. Research is organized into economics and business, experimental sciences and health, law.

Proper citation: Pompeu Fabra University; Barcelona; Spain (RRID:SCR_000256) Copy   

•   Source: SciCrunch Registry

http://www.upmc.fr/en/

A public research university in France that emphasizes medical and scientific research centered on four themes: life and health, the living earth and environment, matter and new materials and modeling and engineering. It is a member of the Sorbonne Universities alliance.

Proper citation: Sorbonne University; Paris; France (RRID:SCR_000246) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/blastplot/

A PERL module that can quickly plot the BLAST results from short sequences (primers, probes, reads) against reference targets. This software generates PNG graphs for all of the reference sequences associated with a BLAST result set.

Proper citation: BLASTPLOT (RRID:SCR_000162) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/gemsim/

A software package for generating realistic simulated next-generation genome sequencing reads with quality score values. The software is written in Python with a command-line user interface.

Proper citation: GemSIM (RRID:SCR_000167) Copy   

•   Source: SciCrunch Registry

http://www.uic.edu/pharmacy/

A public pharmacy school, part of the University of Illinois. It offers a four-year professional degree program that leads to the PharmD, the highest level of professional education in pharmacy. The college also offers programs leading to six master's degrees and four doctorate degrees, covering a spectrum of research areas within the pharmaceutical sciences.

Proper citation: University of Illinois College of Pharmacy (RRID:SCR_000280) Copy   

•   Source: SciCrunch Registry

http://www.uni-stuttgart.de/index.en.html

A public research university with 10 programs in disciplines of science, social science and humanities. The institution has technical programs in civil, mechanical, industrial and electrical engineering.

Proper citation: University of Stuttgart; Stuttgart; Germany (RRID:SCR_000153) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/src/contrib/Archive/iFad/

An R software package implementing a bayesian sparse factor model for the joint analysis of paired datasets, the gene expression and drug sensitivity profiles, measured across the same panel of samples, e.g. cell lines.

Proper citation: iFad (RRID:SCR_000271) Copy   

•   Source: SciCrunch Registry

http://bioinfo.unl.edu/gramcluster.php

Software implementing a fast and accurate progressive clustering algorithm that relies on a grammar-based sequence distance and is particularly useful in clustering large datasets.

Proper citation: GramCluster (RRID:SCR_000272) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/src/contrib/Archive/postgwas/

A comprehensive software toolkit for post-processing, visualization and advanced analysis of GWAS results.

Proper citation: Postgwas (RRID:SCR_000156) Copy   

•   Source: SciCrunch Registry

http://www.queensu.ca/

Public university in Ontario, Canada that offers degree programs in the social sciences and engineering at both the undergraduate, graduate, postdoctorate and professional level. The university operates six research centers that focus on disciplines such as neuroscience, computing, human mobility and Southern African research.

Proper citation: Queens University; Ontario; Canada (RRID:SCR_000278) Copy   

•   Source: SciCrunch Registry

https://github.com/davidliwei/RNASeqReadSimulator

A software tool to generate simulated single-end or paired-end RNA-Seq reads. # It allows users to randomly assign expression levels of transcripts and generate simulated single-end or paired-end RNA-Seq reads. # It is able to generate RNA-Seq reads that have a specified positional bias profile. # It is able to simulate random read errors from sequencing platforms. # The simulator consists of a few simple Python scripts. All scripts are command line driven, allowing users to invoke and design more functions.

Proper citation: RNASeqReadSimulator (RRID:SCR_000270) Copy   

•   Source: SciCrunch Registry

http://depts.washington.edu/biowww/

A department within the University of Washington which focuses on both undergraduate and postgraduate education in biochemistry.

Proper citation: UW Department of Biochemistry (RRID:SCR_000149) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/edgebio

A contract research organization that provides genomics services such as sequencing, bioinformatics, NGS data analysis and whole exome sequencing. EdgeBio is a CLIA-approved service provider.

Proper citation: EdgeBio (RRID:SCR_000183) Copy   

•   Source: SciCrunch Registry