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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Permuco Resource Report Resource Website 1+ mentions |
Permuco (RRID:SCR_022341) | data processing software, software application, software resource, data analysis software | Software R package for permutation test in linear model with nuisances variables.Used for permutation testing in regression, ANOVA, and comparison of signals. | OpenBehavior, permutation testing in regression | is listed by: OpenBehavior | DOI:10.18637/jss.v099.i15 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/dabest-and-permuco/, https://github.com/jaromilfrossard/permuco | SCR_022341 | 2026-08-04 09:44:59 | 2 | ||||||||
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DABEST Resource Report Resource Website 1+ mentions |
DABEST (RRID:SCR_022340) | data processing software, software application, software resource, data analysis software | Software package for data analysis using bootstrap coupled estimation. Library combining Python, R, and MATLAB for estimation statistics. | OpenBehavior, bootstrap coupled estimation, estimation statistics | is listed by: OpenBehavior | DOI:10.1038/s41592-019-0470-3 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/dabest-and-permuco/ | SCR_022340 | Data Analysis with Bootstrapped ESTimation | 2026-08-04 09:45:04 | 6 | |||||||
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GazeMetrics Resource Report Resource Website |
GazeMetrics (RRID:SCR_022338) | data processing software, software application, software resource, data analysis software | Software tool for data extraction and computation of spatial accuracy and precision of head mounted display based eye trackers. Allows for significant customization without altering source code but changes to the code allow for further alteration. | OpenBehavior, eye tracking, behavioral measure, head mounted display based eye trackers, data samples extraction, accuracy and precision calculation |
is listed by: OpenBehavior has parent organization: University of Nevada at Reno; Nevada; USA |
DOI:10.1145/3379156.3391374 | Free, Available for download, Freely available | https://github.com/isayasMatter/GazeMetrics | SCR_022338 | 2026-08-04 09:44:59 | 0 | ||||||||
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pyOS-5 project Resource Report Resource Website |
pyOS-5 project (RRID:SCR_022335) | instrument resource, portal, data or information resource, project portal | Open source operant box system optimized for use with tethered animals. System includes hardware and software. Control electronics are build on pyControl, controlling custom PCB integrating 5 infra-red break-beam sensors and 5 stimulus LEDs, single nose-poke for reward receptacle, stepper motor for control of custom peristaltic pump for reward delivery, audio board for tone generation through attached speaker, house light and fan, LED driver for optogenetic stimulation, and bidirectional communication with external devices via TTL pulses. | OpenBehavior, Instrument, operant box system, tethered animals, behavior apparatus, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 |
DOI:10.1038/s41598-021-01717-1 | Free, Freely available | SCR_022335 | Python based operant box system in 5-choice design, pyOS-5 | 2026-08-04 09:44:59 | 0 | ||||||||
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pyPhotometry Resource Report Resource Website 1+ mentions |
pyPhotometry (RRID:SCR_022940) | instrument resource, portal, data or information resource, project portal | Open source Python based hardware and software for fiber photometry data acquisition. System includes compact, low cost, data acquisition board built around Micropython microcontroller, and cross platform graphical user interface for controlling acquisition and visualising signals. Can acquire two analog and two digital signals, and control two external LEDs via built in LED drivers. Time division multiplexed illumination allows independent readout of fluorescence evoked by different excitation wavelengths from single photoreceiver signal. | OpenBehavior, instrument, fiber photometry, Micropython microcontroller, analog control signals, data acquisition and analysis | is listed by: OpenBehavior | PMID:30837543 | Free, Available for download, Freely available | https://github.com/pyPhotometry | SCR_022940 | 2026-08-04 09:45:08 | 3 | ||||||||
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LED Zappelin’ Resource Report Resource Website |
LED Zappelin’ (RRID:SCR_022560) | topical portal, portal, data or information resource | Open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2 photon imaging. Device that rapidly time interleaves stimulation and detection epochs during two photon imaging. | Instrument, OpenBehavior, LED controller, arbitrary spectrum visual stimulation, optogenetics, two photon imaging, stimulation and detection, behavioral neuroscience |
is listed by: OpenBehavior has parent organization: University of Sussex; Brighton; United Kingdom |
PMID:35498254 | Free, Freely available | https://edspace.american.edu/openbehavior/project/led-zappelin/ | SCR_022560 | 2026-08-04 09:45:03 | 0 | ||||||||
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USVCAM Resource Report Resource Website |
USVCAM (RRID:SCR_022747) | instrument resource, portal, data or information resource, project portal | Open source acoustic camera system for measuring ultrasound communication in rodents. System includes small phased microphone array combined with camera and comprises USV segmentation algorithms with modification for overlapping vocalizations that results in high accuracy. Enables simpler and faster USV localization and assignment. | OpenBehavior, instrument, acoustic camera system, measuring ultrasound communication in rodents |
is listed by: OpenBehavior has parent organization: University of Toyama; Toyama; Japan |
PMID:35982786 | Free, Freely available | https://edspace.american.edu/openbehavior/?s=USVCAM | SCR_022747 | USVCAM project, ultrasonic vocalizations camera | 2026-08-04 09:45:06 | 0 | |||||||
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Minian Resource Report Resource Website 1+ mentions |
Minian (RRID:SCR_022601) | data processing software, data analysis software, software resource, software application, software toolkit | Software miniscope analysis pipeline that requires low memory and computational demand so it can be run without specialized hardware. Offers interactive visualization that allows users to see how parameters in each step of pipeline affect output. | Miniscope, analysis pipeline, calcium imaging, mouse, Visualization, OpenBehavior |
is listed by: OpenBehavior has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NIMH DP2MH122399; NIMH R01MH120162; NIBIB R01EB028166; NSF 1926800; NSF 2046583; NINDS U01NS094286; NSF 1700408; NIA F32AG067640; NINDS R03 NS111493; NIDA R21 DA049568; NINDS R01 NS116357 |
PMID:35642786 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/minian/ | SCR_022601 | 2026-08-04 09:45:07 | 4 | |||||||
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OpenSync Resource Report Resource Website |
OpenSync (RRID:SCR_022722) | data processing software, software application, software resource, data analysis software | Open source platform for synchronizing multiple behavioral and physiological signals in neuroscience experiments. | synchronizing multiple behavioral and physiological signals, behavioral and physiological measures, synchronizing signals, neuroscience experiments, OpenBehavior |
is listed by: OpenBehavior has parent organization: Texas A and M University; Texas; USA |
Free, Available for download, Freely available | https://github.com/moeinrazavi/OpenSync/wiki, https://edspace.american.edu/openbehavior/?s=OpenSync | SCR_022722 | 2026-08-04 09:45:05 | 0 | |||||||||
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Spike Forest project Resource Report Resource Website |
Spike Forest project (RRID:SCR_021472) | portal, project portal, data or information resource | Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest |
DOI:10.7554/elife.55167 | Free, Freely available | SCR_021472 | Spike Forest | 2026-08-04 09:44:50 | 0 | ||||||||
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Pypreclin project Resource Report Resource Website |
Pypreclin project (RRID:SCR_021473) | portal, project portal, data or information resource | Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline. | Raw macaque fMRI images, fMRI images, macaque images, Python, OpenBehavior |
is listed by: OpenBehavior is related to: Pypreclin |
DOI:10.1016/j.neuroimage.2019.116353 | Free, Freely available | SCR_021473 | Pypreclin | 2026-08-04 09:44:49 | 0 | ||||||||
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MNE Scan project Resource Report Resource Website |
MNE Scan project (RRID:SCR_021470) | portal, project portal, data or information resource | Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data. | Electrophysiological data processing, medical regulatory requirements, build standalone applications, MEG data acquisition, MEG data processing, EEG data acquisition, MEG data acquisition, OpenBehavior |
is listed by: OpenBehavior is related to: MNE Scan |
DOI:10.1016/j.jneumeth.2018.03.020 | Free, Freely available | SCR_021470 | MNE Scan | 2026-08-04 09:44:49 | 0 | ||||||||
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Live Mouse Tracker analysis Resource Report Resource Website 1+ mentions |
Live Mouse Tracker analysis (RRID:SCR_021505) | LMT analysis | software resource, software toolkit | Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker. | Live Mouse Tracker, Live Mouse Tracker data analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Live Mouse Tracker project is related to: Live Mouse Tracker Toolkit Analysis |
PMID:31110290 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_021505 | , lmt-analysis, live mouse tracker analysis, LMT analysis | 2026-08-04 09:44:51 | 2 | ||||||
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3DTracker project Resource Report Resource Website |
3DTracker project (RRID:SCR_021440) | portal, project portal, data or information resource | Project related to markerless computerized behavioral analysis for laboratory animals.Provides open source 3D video based behavioral analysis system for neuroscience. System includes open source software tool for 3D-video based markerless computerized behavioral analysis. | 3D video, computerized behavioral analysis, laboratory animals, reconstruct 3D image, animal image, 3D image, estimate animal 3D pose, behavior measurement, freely moving, head fixed, OpenBehavior |
is listed by: OpenBehavior is related to: 3DTracker |
Free, Freely available | SCR_021440 | 3DTracker | 2026-08-04 09:44:49 | 0 | |||||||||
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LinCoM project Resource Report Resource Website |
LinCoM project (RRID:SCR_021438) | portal, project portal, data or information resource | Project related to animal behavior in complex mazes.Provides software MATLAB package for linearization of place fields in complex mazes. | Place fields linearization, complex mazes, producing linear place fields, hippocampal cells, complex mazes behavior, OpenBehavior |
is listed by: OpenBehavior is related to: LinCoM |
DOI:10.1101/2020.08.17.253849 | Free, Freely available | SCR_021438 | LinCoM | 2026-08-04 09:44:48 | 0 | ||||||||
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EthoWatcher project Resource Report Resource Website |
EthoWatcher project (RRID:SCR_021435) | portal, project portal, data or information resource | Project related to video tracking, detailed ethography, and extraction of kinematic variables from digital video files of laboratory animals.Provides computational tool developed at Federal University of Santa Catarina. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher has parent organization: Federal University of Santa Catarina; Santa Catarina; Brazil |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Freely available | SCR_021435 | EthoWatcher | 2026-08-04 09:44:48 | 0 | ||||||||
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Automated Rodent Tracker project Resource Report Resource Website |
Automated Rodent Tracker project (RRID:SCR_021432) | ART | portal, project portal, data or information resource | Project related to development of automated rodent tracking position and movement. Provides software tool to automatically track rodent.Used to track head movements, body movements and also aspects of body size.Identifies certain behaviours from video footage, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Freely available | SCR_021432 | Automated Rodent Tracker | 2026-08-04 09:44:48 | 0 | |||||||
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DeepSqueak project Resource Report Resource Website |
DeepSqueak project (RRID:SCR_021450) | portal, project portal, data or information resource | Project related to rodent social communication through repertoire of ultrasonic vocalizations. Provides deep learning based system for quantification of Ultrasonic Vocalizations.Includes software MATLAB package for high throughput USV detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak |
DOI:10.1038/s41386-018-0303-6 | Free, Freely available | SCR_021450 | DeepSqueak | 2026-08-04 09:44:48 | 0 | ||||||||
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Camera Control project Resource Report Resource Website |
Camera Control project (RRID:SCR_021569) | portal, software resource, project portal, data or information resource | Portal provides Python based camera software GUI developed by Harvard University scientists. Open source software package that allows video to be recorded in sync with behavior. Python API to record video system timestamps from Imaging Source USB cameras. | Camera software, Python API, record video system timestamps, Imaging Source USB cameras, OpenBehavior |
is listed by: OpenBehavior is related to: Camera Control has parent organization: Harvard University; Cambridge; United States |
Free, Freely available | SCR_021569 | Camera Control | 2026-08-04 09:44:50 | 0 | |||||||||
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Rigbox project Resource Report Resource Website |
Rigbox project (RRID:SCR_021444) | portal, project portal, data or information resource | Project related to streamlining behavioral neuroscience experiments.Provides open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. | Managing behavioral neuroscience experiments, running behavioral neuroscience experiments, managing data, acquiring experiment related data, OpenBehavior |
is listed by: OpenBehavior is related to: Rigbox |
DOI:10.1523/eneuro.0406-19.2020 | Free, Freely available | SCR_021444 | Rigbox | 2026-08-04 09:44:48 | 0 |
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