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http://www.bioscience.org/atlases/fert/embrper.htm

THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. During the embryogenesis of human embryo, the development of each organ may be impaired during specific time periods. As illustrated, such impairment leads to congenital anomalies. After such critical periods, the environmental factors cause either minor congenital anomalies or lead to functional abnormalities. True beginning of gestation starts with the fertilization of the ovum which normally occurs one to several days after ovulation. By convention, however, due the fact that the day of the last menstrual period is easily defined, gestation starts on such day. During the first two weeks of pregnancy the embryo does not exist and endometrium is undergoing its normal menstrual and then proliferative phases. Stage one of the development starts with the fertilization of the ovum and stage 2 is initiated by the cleavage of the fertilized ovum. It is during the 4th and 5th stages of development that blastocyst starts its implantation process. By the end of the second week after fertilization, the stage 6 is initiated. During this stage, the primary chorionic villi and embryonic disc are formed.

Proper citation: Human Embryogenesis at a glance (RRID:SCR_008499) Copy   

•   Source: SciCrunch Registry

http://www.oie.int/fileadmin/Home/eng/Health_standards/aahc/2010/en_sommaire.htm

For the purposes of the Aquatic Code, spring viraemia of carp (SVC) means infection with the viral species SVC virus (SVCV) tentatively placed in the genus Vesiculovirus of the family Rhabdoviridae.
Methods for surveillance and diagnosis are provided in the Aquatic Manual.
The recommendations in this Chapter apply to: common carp (Cyprinus carpio carpio) and koi carp (Cyprinus carpio koi), crucian carp (Carassius carassius), sheatfish (also known as European catfish or wels) (Silurus glanis), silver carp (Hypophthalmichthys molitrix), bighead carp (Aristichthys nobilis), grass carp (white amur) (Ctenopharyngodon idellus), goldfish (Carassius auratus), orfe (Leuciscus idus), and tench (Tinca tinca). These recommendations also apply to any other susceptible species referred to in the Aquatic Manual when traded internationally.
1) Periodicals
*Scientific and Technical Review (available on the Online Bookshop and Website);
*Bulletin (available on the Online Bookshop and Website);
*Disease Information (available on the WAHID interface);
*World Animal Health (available on the Online Bookshop and on the WAHID interface);
Health standards
*Terrestrial Animal Health Code (available on the Online Bookshop and Website);
*Aquatic Animal Health Code (available on the Online Bookshop and Website);
*OIE Quality Standard and Guidelines for Veterinary Laboratories: Infectious Diseases (available on the Online Bookshop);
*Manual of Diagnostic Tests and Vaccines for Terrestrial Animals (available on the Online Bookshop and Website);
*Manual of Diagnostic Tests for Aquatic Animals (available on the Online Bookshop in English only (2009 version) and also on the Website).

Proper citation: Aquatic Animal Health Code - 2008 (RRID:SCR_008413) Copy   

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http://www.embase.com

You can begin your search immediately using the Quick form on the home page or you can access the other specialized search forms in Embase. You can choose any section from the options on the top menu bar: Search, Emtree, Journals, Authors, or Help. You can start to search without logging in but if you would like to set up an email alert or save a search, then you may Login or Register from the upper-right part of the screen. Note: if you are outside your institution IP range, you will first be directed to the info site before accessing the Embase Home page. For more information on remote access, please see Login section. Search Forms Search is at the core of Embase and all search forms are designed to allow you to look for biomedical and pharmaceutical clinical and research information easily and quickly, whether you are a new or experienced searcher. The Embase search engine allows Boolean searching with wildcard and truncation features, as well as many predefined search limits. Search is divided into five options: Quick, Advanced, Drug, Disease and Article. Quick lets you perform easy yet powerful searches without having to learn a complex search language. It is perfect if you are starting your research and looking for an overview of the literature or good terms to include in your search strategy. Autocomplete will help you to search using the bext terminology. Advanced incorporates options from Emtree term mapping including explosion searching for maximum precision in subject searching (see Emtree) and Drug and Disease provide access to specialized features useful to search these topics, such as ''Adverse Drug Reaction''''Drug Combination''. Generally speaking, drug searches are best carried out in the Drug form, diseases in the Disease form and non-drug and disease searches in the Advanced form. Article allows you to pinpoint individual articles. Embase is owned and operated by Elsevier B.V., Radarweg 29, 1043 NX Amsterdam, The Netherlands, Reg. No. 33156677, BTW No. 002967455B65 (Elsevier).

Proper citation: Embase Biomedical Answers (RRID:SCR_008498) Copy   

•   Source: SciCrunch Registry

http://www.emsdiasum.com

A complete online Product Catalog of chemicals, supplies, accessories, and equipment for Electron and Light Microscopy, Histology, Cell Biology, Neuroscience, and all biological related research fields. At the site, you can find technical tips and recommended articles of interest, technical and product data sheets, Material Safety Data Sheets, and many revolutionary new products and exclusive items. A complete product catalog of the entire Diatome collection of Diamond knives, tools, and accessories for Electron and Light microscopy for Biological and Materials Science at room and cryo temperatures. Available on-line as well is information on our services, programs, specials, and policies. The complete handling and use technical manual as well as troubleshooting can also be found at our site. The Summers Optical on-line catalog including a complete line of optical cements and adhesives, decementing agents, hardness testers, ultrasonic baths and UV lights as well as technical and transmission data and problem solving can be found at this site. As well as, our unique bonding manual including troubleshooting and charts for how to choose a cement for specific applications and a complete set of MSDS on all of our products can be seen here. EMS Contract Packaging is a total service contract manufacturer, packager, and formulator with over 40 years experience in drug and cosmetic formulating and packaging. Negafile furniture quality wood filing systems and storage cases for grids, negatives, film and microscope glass slides. And a full line of shipping and packaging solutions for all your traditional or digital media.

Proper citation: Emsdiasum (RRID:SCR_008497) Copy   

•   Source: SciCrunch Registry

http://www.who.int/gho/en/

WHOSIS, the WHO Statistical Information System, is an interactive database bringing together core health statistics for the 193 WHO Member States. It comprises more than 100 indicators, which can be accessed by way of a quick search, by major categories, or through user-defined tables. The data can be further filtered, tabulated, charted and downloaded. The data are also published annually in the World Health Statistics Report released in May. The WHO Statistical Information System is the guide to health and health-related epidemiological and statistical information available from the World Health Organization. Most WHO technical programs make statistical information available, and they will be linked from here. Sponsors: WHOSIS is supported by the World Health Organization. Note: The WHO Statistical Information System (WHOSIS) has been incorporated into the Global Health Observatory (GHO) to provide you with more data, more tools, more analysis and more reports.

Proper citation: World Health Organization Statistical Information System (RRID:SCR_008250) Copy   

•   Source: SciCrunch Registry

http://rd.plos.org/pbio.0050257

Resources for macromolecular X-ray crystallography from the Richardson Laboratory, including kinemages (a scientific illustration presented as an interactive computer display), databases, software, training materials and images

Proper citation: 3D Macromolecular Analysis and Kinemage Home Page (RRID:SCR_008569) Copy   

•   Source: SciCrunch Registry

http://www.molecularbrain.org/

MolecularBrain is an attempt to collect, collates, analyze and present the microarray derived gene expression data from various brain regions side by side. Transcription Profile of any gene in Mouse (online) and Human Brain (not yet) can be accessed as a histogram along with links to access various aspects of that gene. The expression levels were calculated from microarray data deposited at GEO (Gene expression omnibus). The molecular brain database could be searched using the built in search tool with the terms Entrez GeneID, gene symbol, synonym or description. Gene information along with their expression values can be also accessed from the alphabetical list of gene symbols on the footer. The protocol and GEO sample information is available.

Proper citation: Molecular Brain: Transcription Profiles of Mouse and Human Brains (RRID:SCR_008689) Copy   

•   Source: SciCrunch Registry

http://pbs.jhu.edu/research/Yantis/publications/ClassicPapers

This website contains a list of classic articles in visual perception. They are listed alphabetically by the last name if the article''s author.

Proper citation: Classic Articles in Visual Perception (RRID:SCR_008325) Copy   

•   Source: SciCrunch Registry

http://bioinformatics.picr.man.ac.uk/adapt/Welcome.adapt

Library of many-to-many relationships between Affymetrix probesets transcripts and genes, by directly mapping every probe against publicly available mRNAs/cDNA sequences from RefSeq and Ensembl. You can search the database by AffymetrixProbeset ID, Transcript Accession, Gene Symbol or Gene Accession. Currently, the ADAPT database holds information on 23 Array Types containing 255771 unique Probesets, that themselves map onto 252788 entries in both RefSeq and Ensembl. ADAPT is clusterable, cross platform, runs on any Java Virtual machine after version 1.4, and utilises the following software: :- Apache Tomcat :- Apache Struts :- JBoss Application Server :- Postgresql Sponsors: ADAPT has been written with funding by Cancer Research UK. Keywords: Database, Gene, Transcript, Mapping, Probe, mRNA, cDNA, Sequence, Association, Array, Probeset,

Proper citation: ADAPT: A Database of Affymetrix Probesets and Transcripts (RRID:SCR_008688) Copy   

•   Source: SciCrunch Registry

http://www.BioMedSearch.com

BioMedSearch is a biomedical search engine that contains NIH/PubMed documents, plus a large collection of theses, dissertations, and other publications not found anywhere else for free, making it the most comprehensive free search on the web. :Besides free-form search, users can search based on Author, Journal Title, Publication Date, the Language in which the article was published (many non-English articles have English language abstracts), MeSH (Medical Subject Headings) and more. : The goal of BioMedSearch.com is to provide free access to a massive collection of authoritative documents relating to the biomedical field. Our mission is to make these important works available to the community in a way that is fast and easy, while still offering the advanced features demanded by power users such as portfolios, collaboration features, bibliographical citation export, alerts, and more. Whether you are doctor, scientist, or someone interested in researching a medical topic out of personal interest, BioMedSearch aggregates a vast number of authoritative documents in one place to make finding medical information easy, fast and free.

Proper citation: Biomedical Search: Medical Research and Health Resources (RRID:SCR_008683) Copy   

•   Source: SciCrunch Registry

http://www.molgen.ua.ac.be/ADMutations/default.cfm?MT=1&ML=0&Page=ADMDB

A locus-specific database aimed at collecting known mutations and non-pathogenic coding variations in the genes related to Alzheimer disease (AD) and frontotemporal dementia (FTD), following the guidelines of the Human Genome Variation Society. Mutations can be retrieved based on the gene, phenotype and publication. The database contains mutations reported in the literature and at scientific meetings, and unpublished mutations directly submitted to the database. To date, AD&FTDMDB contains mutations in the genes encoding the Amyloid Beta Precursor Protein (APP), Presenilin 1 (PSEN1), Presenilin 2 (PSEN2), Chromatin Modifying Protein 2B (CHMP2B), fusion (involved in t(12;16) in malignant liposarcoma) (FUS), Granulin (GRN), Microtubule Associated Protein Tau (MAPT), TAR DNA binding protein (TARDBP) and Valosin-containing Protein (VCP) and holds 415 different mutations observed in 1027 patients or families. As of March 2013, the latest publications referenced were from 2008, indicating that this resource may not be up to date.

Proper citation: Alzheimer Disease and Frontotemporal Dementia Mutation Database (RRID:SCR_008286) Copy   

•   Source: SciCrunch Registry

http://www.compneuro.org/CDROM/catacomb/index.html

Catacomb consists of a set of frameworks for various types of models in neuroscience, user interfaces to facilitate building models within these frameworks, and numerical algorithms to compute their behavior. The available frameworks include reaction kinetics, reaction diffusion systems, kinetic scheme models of ion channels, small neuron models and integrate and fire networks. It is a library of models (data structures and algorithms) covering a range of problems in neuroscience together with a versatile graphical user interface for constructing and running specific instances of the models. Some features of Catacomb include: * Class models. There is a growing set of classes containing data structures and calculation methods for various problem domains in neuroscience - reaction schemes, stochastic channel models, integrate-and-fire networks, cell geometry et al. * Dynamic interface builder. Using Java''s reflection capabilities, individual user interfaces are constructed for each class model allowing new instances to be created and displaying the results of any calculation methods they may contain. * Parameter watching. Using Java threads, the calculations are rerun and results displayed whenever parameters upon which they depend are changed. * Session recording. Operations can be recorded and played back for illustrating how to use Catacomb or for preconfigured demonstrations of model behavior. * Compatible with JPython. Catacomb does not include its own interpreter except in the minimal sense required to parse its own saved files. But its objects and methods are accessible to JPython which can be used for command line access or scripting. * Applet building. The contents of windows in the display can be extracted and packaged together in a single panel for loading as an applet. The model is saved as a java source file which, once compiled, can be packaged with the original Catacomb archive for loading from a Web page. See the AppletConfigEditor.

Proper citation: Components And Tools for Accessible COmputer Modeling in (neuro)Biology (RRID:SCR_008321) Copy   

•   Source: SciCrunch Registry

http://bioinf.xmu.edu.cn:8080/software/CYTOSVM/cytosvm.php

Cytokines are a diverse group of cell intercellular messengers responsible for signaling variety of cell functions, such as immunity, hematopoiesis, chemotactic activities, cell maturation, proliferation, growth and differentiation through their interactions with respective receptors on cell membranes. Currently, a number of cytokines have been identified and classified

Proper citation: CytoSVM statistics (RRID:SCR_008442) Copy   

•   Source: SciCrunch Registry

http://rsat.ulb.ac.be/rsat/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Retrieve-ensembl-seq is included in the software suite regulatory sequence analysis tools (RSAT), allowing instant submission of retrieved sequences to further analysis tools. AVAILABILITY: retrieve-ensembl-seq is integrated in the RSAT suite: http://rsat.ulb.ac.be/rsat. Web site: http://rsat.ulb.ac.be/rsat/retrieve-ensembl-seq_form.cgi. Web services: http://rsat.ulb.ac.be/rsat/web_services/RSATWS.wsdl. Stand-alone distribution: freely available under an academic licence to download from the RSAT web site. The complete manual, a convenient tutorial and demos are available from the RSAT website. Additional help can be found on the RSAT public forum.

Proper citation: Regulatory Sequence Analysis Tools (RRID:SCR_008560) Copy   

•   Source: SciCrunch Registry

http://www.stanford.edu/group/exonarray/cgi-bin/plot_selector.pl

Transcriptome database of acutely isolated purified astrocytes, neurons, and oligodendrocytes. Provides improved cell-type-specific markers for better understanding of neural development, function, and disease.

Proper citation: Exon Array Browser (RRID:SCR_008712) Copy   

•   Source: SciCrunch Registry

http://cushing.med.yale.edu/gsdl/cgi-bin/library

The images in this collection are derived from high resolution scans of glass 3.25 X 4 inch lantern slides that were part of a large collection of slides covering his years at the Rockefeller University and Yale University School of Medicine. These selected images were scanned by James D. Jamieson, M.D., Ph.D., a student of Palade. The images also include some of the earliest electron micrographs taken by collaborators of George Palade both at the Rockefeller University (1945 - 1973) and at Yale (1973 - 1990). They include micrographs taken by Professor Marilyn Farquhar, Ph.D., whose studies elucidated the function of the glomerular basement membrane in renal filtration. There are 5 ways to find information in this collection: search for particular words that appear in the text by clicking the Search button; browse documents by Title by clicking the Titles button; browse documents by Subject by clicking the Subjects button; browse documents by Creator by clicking the Creators button, and browse documents by References by clicking the References button. Sponsors: This collection is the result of a collaboration between James D. Jamieson, M.D., Ph.D., Professor, Dept. of Cell Biology, and Arthur R. Belanger, OBE, Systems Manager, Harvey Cushing/John Hay Whitney Medical Library, both at the Yale University School of Medicine.

Proper citation: George E. Palade EM Slide Collection. (RRID:SCR_008675) Copy   

•   Source: SciCrunch Registry

http://recombineering.ncifcrf.gov/

Recombineering (recombination-mediated genetic engineering) is a powerful method for fast and efficient construction of vectors for subsequent manipulation of the mouse genome or for use in cell culture experiments. It is also an efficient way of manipulating the bacterial genome directly. Recombineering is a method based on homologous recombination in E. Coli using recombination proteins provided from ? phage. Our bacterial strains contain a defective ? prophage inserted into the bacterial genome. The phage genes of interest, exo, bet, and gam, are transcribed from the ?PL promoter. This promoter is repressed by the temperature-sensitive repressor cI857 at 32C and derepressed (the repressor is inactive) at 42C. When bacteria containing this prophage are kept at 32C no recombination proteins are produced. However, after a brief (15 minutes) heat-shock at 42C a sufficient amount of recombination proteins are produced. exo is a 5''-3'' exonuclease that creates single-stranded overhangs on introduced linear DNA. bet protects these overhangs and assists in the subsequent recombination process. gam prevents degradation of linear DNA by inhibiting E. Coli RecBCD protein. Linear DNA (PCR product, oligo, etc.) with sufficient homology in the 5'' and 3'' ends to a target DNA molecule already present in the bacteria (plasmid, BAC, or the bacterial genome itself) can be introduced into heat-shocked and electrocompetent bacteria using electroporation. The introduced DNA will now be modified by exo and bet and undergo homologous recombination with the target molecule. The method is so efficient that co-electroporation of a supercoiled plasmid and a linear piece of DNA into heat-shocked, electrocompetent bacteria will work as well.

Proper citation: Recombineering Information (RRID:SCR_008556) Copy   

•   Source: SciCrunch Registry

http://mips.helmholtz-muenchen.de/funcatDB/

THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 19, 2019. The Functional Catalogue is an annotation scheme for the functional description of proteins of prokaryotic and eukaryotic origin. Taking into account the broad and highly diverse spectrum of known protein functions, the FunCat consists of 28 main functional categories (or branches) that cover general fields like cellular transport, metabolism and cellular communication/signal transduction. The main branches exhibit a hierarchical, tree like structure with up to six levels of increasing specificity. In total, the FunCat version 2.1 includes 1362 functional categories. This general concept was retained since the annotation of the Saccharomyces cerevisiae genome with only 4 revisions and later on also proved to be well suited for the annotation of genomes from different domains of life (Ruepp et al. 2004). The present and previous versions as well as a version mapping file of the FunCat and annotation data of our core projects can be downloaded via FTP. The MIPS Functional Catalogue Database provides a search tool to browse and search the Functional Categories including the FunCat Number, description, EC number, GO number or keywords associated with the categories. All FunCat annotated proteins and the amount of Co-annotated-FunCats can be retrieved starting with a specific category in a selected organism. A statistical survey of the functional distribution of a given set of genes/entries, e. g. a set of genes with up-regulated expression under a certain condition can be retrieved.

Proper citation: MIPS FunCat (RRID:SCR_008709) Copy   

•   Source: SciCrunch Registry

http://www.cmbi.ru.nl/GeneSeeker/

The GeneSeeker allows you to search across different databases simultaneously, given a known human genetic location and expression/phenotypic pattern. The GeneSeeker returns any found gene names which are located on the specified location and expressed in the specified tissue. To search for more expression location in one search, just enter them in the textbox for the expression location and separate them with logical operators (and, or, not). You can specify as many tissues as you want, the program starts 20 queries simultaneously, and then waits for a query to finish before starting another query, to keep server loads to a minimum. You can also search only for expression, just leave the cytogenetic location fields blank, and do the query. If you only want to look for one cytogenetic location, only fill in the first location field, and the GeneSeeker will search with only this one. Housekeeping genes , found in Swissprot can be excluded, or genes that are to be excluded can be specified. Human chromosome localizations are translated with an oxford-grid to mouse chromosome localizations, and then submitted to the Mgd. Sponsors: GeneSeeker is a service provided by the Centre for Molecular and Biomolecular Informatics (CMBI).

Proper citation: GeneSeeker (RRID:SCR_008347) Copy   

•   Source: SciCrunch Registry

http://bionot.askhermes.org/integrated/BioNot.uwm

Database of negated biomedical sentences in literature consisting of more than 32 million negated sentences. Negated sentences were detected using the algorithm described in - Shashank Agarwal, Hong Yu Biomedical negation scope detection with Conditional Random Fields Journal of the American Medical Informatics Association (JAMIA), 2010; 17:696-701. After entering your query in the search box (for example MeCP2 autism), the search results with the negated sentence and the sentences preceding and following the negated sentences are displayed. A link to the source of the sentence is also provided, which links to the article from which the negated sentence was extracted. BioNOT is no longer updated. Documented 2013.

Proper citation: BioNOT (RRID:SCR_008743) Copy   

•   Source: SciCrunch Registry