Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
glfMultiples Resource Report Resource Website 1+ mentions |
glfMultiples (RRID:SCR_010763) | glfMultiples | software resource | A GLF-based variant caller for next-generation sequencing data. |
is listed by: OMICtools has parent organization: University of Michigan; Ann Arbor; USA |
OMICS_00061 | SCR_010763 | 2026-08-08 11:59:24 | 3 | ||||||||||
|
SSRLocator Resource Report Resource Website 1+ mentions |
SSRLocator (RRID:SCR_010766) | SSRLocator | software resource | A software tool for detection and characterization of micro- and minisatellites in DNA sequences. | is listed by: OMICtools | OMICS_00114 | SCR_010766 | SSR Locator, Simple Sequence Repeat Locator, SSR Locator - Simple Sequence Repeat Locator | 2026-08-08 11:59:24 | 9 | |||||||||
|
SSR pipeline Resource Report Resource Website 10+ mentions |
SSR pipeline (RRID:SCR_010767) | SSR_pipeline | software resource | Software for the Identification of Microsatellite Sequences from Paired-End Illumina High-Throughput DNA Sequence Data | python, next-generation dna sequencing, simple sequence repeat | is listed by: OMICtools | PMID:24052535 | OMICS_00115 | SCR_010767 | SSR_pipeline: Computer Software for the Identification of Microsatellite Sequences from Paired-End Illumina High-Throughput DNA Sequence Data | 2026-08-08 11:59:35 | 18 | |||||||
|
draw-sneakpeek Resource Report Resource Website |
draw-sneakpeek (RRID:SCR_010801) | draw-sneakpeek | software resource | Analysis Workflow and Quality Metric Management for DNA-Seq Experiments. |
is listed by: OMICtools has parent organization: Google Code |
OMICS_00285 | SCR_010801 | 2026-08-08 11:59:36 | 0 | ||||||||||
|
TRhist Resource Report Resource Website 1+ mentions |
TRhist (RRID:SCR_010769) | TRhist | software resource | A software tool for finding significant tandem repeats using short reads. |
is listed by: OMICtools has parent organization: University of Tokyo; Tokyo; Japan |
PMID:24215022 | OMICS_00117 | SCR_010769 | Trhist - a tandem repeat profiler in personal genomes | 2026-08-08 11:59:24 | 1 | ||||||||
|
CNAseg Resource Report Resource Website 1+ mentions |
CNAseg (RRID:SCR_010817) | CNAseg | software resource | A novel framework for the identification of CNA events that uses flowcell-to-flowcell variability to estimate the false positive rate and the depth of coverage to finalize copy number calls. | is listed by: OMICtools | OMICS_00337 | SCR_010817 | 2026-08-08 11:59:37 | 3 | ||||||||||
|
CnD Resource Report Resource Website |
CnD (RRID:SCR_010818) | CnD | software resource | A program to detect copy number variants from short read sequence data. |
is listed by: OMICtools has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
OMICS_00338 | SCR_010818 | 2026-08-08 11:59:24 | 0 | ||||||||||
|
MAPP Resource Report Resource Website 50+ mentions |
MAPP (RRID:SCR_010775) | MAPP | software resource | Java program that predicts the impact of all possible amino acid substitutions on the function of the protein., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. |
is listed by: OMICtools has parent organization: Stanford University; Stanford; California |
NHGRI | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00132 | SCR_010775 | Multivariate Analysis of Protein Polymorphism, Multivariate Analysis of Protein Polymorphism:MAPP | 2026-08-08 11:59:24 | 61 | |||||||
|
CEQer Resource Report Resource Website 1+ mentions |
CEQer (RRID:SCR_010813) | CEQer | software resource | A graphical, event-driven tool for CNA/AI-coupled analysis of exome sequencing reads. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:24124457 | Commercial license, Free | biotools:ceqer, OMICS_00329 | https://bio.tools/ceqer | SCR_010813 | Comparative Exome Quantification analyzer | 2026-08-08 11:59:37 | 7 | |||||
|
Oncodrive-fm Resource Report Resource Website 10+ mentions |
Oncodrive-fm (RRID:SCR_010781) | Oncodrive-fm | software resource | An approach to uncover driver genes or gene modules. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
OMICS_00157, biotools:oncodrivefm | https://bio.tools/oncodrivefm | SCR_010781 | 2026-08-08 11:59:36 | 15 | ||||||||
|
CRISP Resource Report Resource Website 1+ mentions |
CRISP (RRID:SCR_010759) | CRISP | software resource | A software program to detect SNPs and short indels from pooled sequencing data generated using next-generation sequencing instruments. | is listed by: OMICtools | OMICS_00057 | SCR_010759 | 2026-08-08 11:59:35 | 8 | ||||||||||
|
CloudBrush Resource Report Resource Website |
CloudBrush (RRID:SCR_010751) | CloudBrush | software resource | A De Novo Next Generation Genomic Sequence Assembler Based on String Graph and MapReduce Cloud Computing Framework. | mapreduce/hadoop | is listed by: OMICtools | PMID:23282094 | Free | OMICS_00010 | SCR_010751 | 2026-08-08 11:59:23 | 0 | |||||||
|
SSAKE Resource Report Resource Website 10+ mentions |
SSAKE (RRID:SCR_010753) | SSAKE | software resource | Software designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
DOI:10.1093/bioinformatics/btl629 | biotools:ssake, OMICS_00033 | https://bio.tools/ssake, https://sources.debian.org/src/ssake/ | SCR_010753 | 2026-08-08 11:59:35 | 11 | |||||||
|
ComB Resource Report Resource Website 100+ mentions |
ComB (RRID:SCR_010757) | ComB | software resource | A software package designed for the downstream analysis of short read mapping data produced by the ABI SOLiD and Illumina sequencing platforms. |
is listed by: OMICtools has parent organization: Google Code |
PMID:21563978 | GNU General Public License, v2 | OMICS_00053 | SCR_010757 | 2026-08-08 11:59:23 | 105 | ||||||||
|
CopySeq Resource Report Resource Website 1+ mentions |
CopySeq (RRID:SCR_010758) | CopySeq | software resource | A computational tool that analyzes the depth-of-coverage of high-throughput DNA sequencing reads, and can integrate paired-end and breakpoint junction analysis based CNV-analysis approaches, to infer locus copy-number genotypes. | java, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: European Molecular Biology Laboratory |
PMID:21085617 | biotools:copyseq, OMICS_00055 | https://bio.tools/copyseq | SCR_010758 | 2026-08-08 11:59:35 | 1 | |||||||
|
FreeBayes Resource Report Resource Website 1000+ mentions |
FreeBayes (RRID:SCR_010761) | FreeBayes | software resource | A Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs, indels, MNPs, and complex events smaller than the length of a short-read sequencing alignment. | single-nucleotide polymorphism, indel, insertion, deletion, multi-nucleotide polymorphism, complex event, composite insertion, substitution event, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
DOI:arXiv:1207.3907 | OMICS_00059, biotools:freebayes | https://bio.tools/freebayes, https://sources.debian.org/src/freebayes/ | SCR_010761 | 2026-08-08 11:59:35 | 2118 | |||||||
|
balony Resource Report Resource Website 10+ mentions |
balony (RRID:SCR_010968) | balony | software resource | Image analysis and data inspection software for agar plates generated in high-throughput yeast genetics and genomics experiments. |
is listed by: OMICtools has parent organization: Google Code |
PMID:24305553 | OMICS_00839 | SCR_010968 | balony - Software for the analysis of high-throughput solid media-based screens | 2026-08-08 11:59:41 | 11 | ||||||||
|
OligoFaktory Resource Report Resource Website 1+ mentions |
OligoFaktory (RRID:SCR_010962) | OligoFaktory | software resource | A free software for Mac OS X which designs long oligos for DNA microarrays, primers for PCR, siRNAs, and more�� | is listed by: OMICtools | Free | OMICS_00829 | SCR_010962 | 2026-08-08 11:59:41 | 1 | |||||||||
|
ProbeMaker Resource Report Resource Website 10+ mentions |
ProbeMaker (RRID:SCR_010964) | ProbeMaker | software resource | A Java software aimed at providing a framework for design and analysis of sets of oligonucleotide probes for use in multiplex assays for nucleic acid analyses and other purposes. | java |
is listed by: OMICtools has parent organization: Uppsala University; Uppsala; Sweden |
PMID:16171527 | GNU General Public License, The community can contribute to this resource, MolTools library and the AppTools library are distributed under the, GNU Lesser General Public License | OMICS_00834 | SCR_010964 | 2026-08-08 11:59:26 | 13 | |||||||
|
PROBEmer Resource Report Resource Website |
PROBEmer (RRID:SCR_010965) | PROBEmer | software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 1, 2014, A web-based software tool that enables selecting optimal oligos for PCR applications and multiplex detection. | is listed by: OMICtools | PMID:12824409 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00835 | SCR_010965 | 2026-08-08 11:59:41 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
