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http://www.sandiegoinstruments.com/any-maze-video-tracking/
Video tracking system used to automate testing in a variety of behavioral apparatus. ANY-maze can automatically track the tail, head, or body of a test animal in up to 16 pieces of apparatus. The software can record live images or digital files with different camera types and save the data in multiple formats. ANY-maze contains built in statistical tests and standard measures for distance, speed, mobility, duration, etc., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: ANY-maze (RRID:SCR_014289) Copy
http://www.bio-rad.com/en-us/product/quantity-one-1-d-analysis-software
Software used for Bio-Rad imaging systems to acquire, quantitate, and analyze a variety of data. The software allows automatic configuration of imaging systems with appropriate filters, lasers, LEDs, and other illumination sources. It also contains tools for automated analysis of tests and assays such as 1-D electrophoretic gels, western blots, and colony counts.
Proper citation: Quantity One 1-D Analysis Software (RRID:SCR_014280) Copy
http://www.definiens.com/research/tissue-studio/developer-xd
A development environment designed to create automated image analysis solutions for segmentation and classification tasks. It delivers quantitative and consistent data for any type of image (e.g., IHC, ISH, IF images in different formats). Developer XD also contains a large library of image analysis algorithms, which users can add to, for whole slide images and tissue microarrays (TMAs). It can be integrated with an existing Tissue Studio installation.
Proper citation: Definiens Developer XD (RRID:SCR_014283) Copy
http://downloads.thermofisher.com/Instrument_Software/qPCR/Step-1/SOP23_Release%20Notes_4482516.pdf
A software program for the Applied Biosystems StepOne and StepOnePlus Real-Time PCR Systems. StepOne software allows the user to open and analyze experiments generated from either the StepOne or the StepOnePlus system. Users can set up experiments, send experiments to the instrument, control the instrument settings, and collect and analyze data.
Proper citation: StepOne Software (RRID:SCR_014281) Copy
http://www.agilent.com/en-us/products/cell-analysis-(seahorse)/software-download-for-wave-desktop
Software to manage Seahorse XFe24 Analyzer, which measures OCR and ECAR of live cells in a 24-well plate format. Users can create and modify assay templates and analyze and manage data.
Proper citation: Seahorse Wave (RRID:SCR_014526) Copy
https://github.com/nickFurlotte/pylmm
A Python package for doing linear mixed model associations in genome wide association studies (GWAS). The software corrects for population structure using EMMA.
Proper citation: pyLMM (RRID:SCR_014525) Copy
http://www.starrlifesciences.com/products/vitalview-software
A data acquisition and analysis software program. The program collects data from sensors and receivers and displays graphical data analysis as well as descriptive statistics.
Proper citation: VitalView Software (RRID:SCR_014497) Copy
https://ndar.nih.gov/tools_guid_tool.html
A customized software application that generates a Global Unique Identifier for each study participant. The GUID is a universal subject ID that allows researchers to share data specific to a study participant without exposing personally identifiable information (PII). The GUID has been approved by the NIH Office of General Counsel.
Proper citation: GUID Tool (RRID:SCR_014530) Copy
https://www.qut.edu.au/research/research-projects/landmark-biobanks
A repository of human tissue samples collected during the LANDMark study (Longitudinal Assessment of Neuropathy in Diabetes using novel ophthalmic markers). The LANDMark Biobank longitudinal dataset contains blood and tissue (skin) samples and matching detailed phenotypic data of three microvascluar complications of type 1 diabetes: neuropathy, nephropathy and retinopathy.
Proper citation: LANDMark BioBanks (RRID:SCR_014534) Copy
http://www.exploranova.com/products/mercator/
A software package for quantification of histological sections. This software performs functions including: management and analysis of regions of interest, annotations, statistical analysis, and 3D visualization. These results are edited in an Excel-compatible spreadsheet.
Proper citation: Mercator (RRID:SCR_014493) Copy
http://www.imagemagick.org/script/index.php
Software suite for creating, editing, composing, and converting bitmap images. It can read and write images in over 200 formats including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. The user can use this software to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves.
Proper citation: ImageMagick (RRID:SCR_014491) Copy
A program that searches PubMed to generate a heat map using a user's search terms. It also allows you to see over the years how many publications there are with the user's search term(s).
Proper citation: pubatlas.org (RRID:SCR_014538) Copy
Commercial software tool designed to function as a multiplatform instrument controlling environment for NIRx products. Its features include the ability to run full or partial sensing configurations, montage views and viewing options, and a real-time system status reporting display.
Proper citation: NIRStar (RRID:SCR_014540) Copy
A forum for preclinical data sharing and interpretation to enhance its utility for clinical research and development. The forum allows researchers to communicate and collaborate on modern preclinical issues and data sharing.
Proper citation: Preclinical Data Forum Network (RRID:SCR_014545) Copy
http://www.celllineauthentication.com/
A material analysis service of the commercial organization Genetica DNA Laboratories which provides authentication of human cancer cell lines, stem cell lines and xenografts utilizing STR DNA technology.
Proper citation: Cell Line Authentication Testing (RRID:SCR_014504) Copy
A persistent unique identifier for samples and specimens collected from the natural environment. IGSNs are created by the user and are case sensitive. They should be concise, machine readable, and non-derivable to ensure originality. IGSNs were created and are organized by the IGSN e.V., whose goal is to implement and promote standard methods for locating, identifying, and citing physical samples with confidence by operating an international IGSN registration service with a distributed infrastructure for use by and benefit to its members.
Proper citation: International Geo Sample Number (RRID:SCR_014505) Copy
http://zhanglab.ccmb.med.umich.edu/I-TASSER/
Web server as integrated platform for automated protein structure and function prediction. Used for protein 3D structure prediction. Resource for automated protein structure prediction and structure-based function annotation.
Proper citation: I-TASSER (RRID:SCR_014627) Copy
http://www.vsni.co.uk/products/genstat/
A statistical software which can be used for basic statistics, experimental design, sample size calculations, and analysis of linear mixed models, time series, and spatial analysis.
Proper citation: GenStat (RRID:SCR_014595) Copy
A software used to control and operate the Applied Biosystems 7500 Real-Time PCR system.
Proper citation: 7500 Real-Time PCR Software (RRID:SCR_014596) Copy
http://chemistry.unt.edu/~verbeck/LIMS/Manuals/XCAL_Quant.pdf
A software which acquires and processes data sets, primarily through the Xcalibur system.
Proper citation: Thermo Xcalibur (RRID:SCR_014593) Copy
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