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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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ANY-maze Resource Report Resource Website 1000+ mentions |
ANY-maze (RRID:SCR_014289) | image acquisition software, data acquisition software, software resource, software application, data processing software | Video tracking system used to automate testing in a variety of behavioral apparatus. ANY-maze can automatically track the tail, head, or body of a test animal in up to 16 pieces of apparatus. The software can record live images or digital files with different camera types and save the data in multiple formats. ANY-maze contains built in statistical tests and standard measures for distance, speed, mobility, duration, etc., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | video tracking system, automated video tracking, behavioral apparatus, data acquisition software, record live image | is related to: IITC Life Sciences: Rotarod Test | THIS RESOURCE IS NO LONGER IN SERVICE | http://www.anymaze.co.uk/ | SCR_014289 | ANY-MAZE, ANY-Maze, any maze | 2026-08-08 12:00:30 | 1337 | ||||||||
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Quantity One 1-D Analysis Software Resource Report Resource Website 10000+ mentions |
Quantity One 1-D Analysis Software (RRID:SCR_014280) | data acquisition software, software resource, software application, data analysis software, data processing software | Software used for Bio-Rad imaging systems to acquire, quantitate, and analyze a variety of data. The software allows automatic configuration of imaging systems with appropriate filters, lasers, LEDs, and other illumination sources. It also contains tools for automated analysis of tests and assays such as 1-D electrophoretic gels, western blots, and colony counts. | data analysis software, data acquisition software, automatic configuration, imaging system, automated analysis | SCR_016622 | SCR_014280 | 2026-08-08 12:00:29 | 13127 | |||||||||||
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Definiens Developer XD Resource Report Resource Website 10+ mentions |
Definiens Developer XD (RRID:SCR_014283) | software resource | A development environment designed to create automated image analysis solutions for segmentation and classification tasks. It delivers quantitative and consistent data for any type of image (e.g., IHC, ISH, IF images in different formats). Developer XD also contains a large library of image analysis algorithms, which users can add to, for whole slide images and tissue microarrays (TMAs). It can be integrated with an existing Tissue Studio installation. | development environment, image analysis solution, segmentation, classification, image analysis algorithm library, tissue microarray, whole slide image, tissue studio | is listed by: SoftCite | SCR_014283 | 2026-08-08 12:00:29 | 11 | |||||||||||
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StepOne Software Resource Report Resource Website 100+ mentions |
StepOne Software (RRID:SCR_014281) | software resource, software application, data analysis software, data processing software | A software program for the Applied Biosystems StepOne and StepOnePlus Real-Time PCR Systems. StepOne software allows the user to open and analyze experiments generated from either the StepOne or the StepOnePlus system. Users can set up experiments, send experiments to the instrument, control the instrument settings, and collect and analyze data. | applied biosystems step one, pcr, data analysis software, instrument management software, experimental control | Pay for product | https://www.thermofisher.com/us/en/home/technical-resources/software-downloads/StepOne-and-StepOnePlus-Real-Time-PCR-System.html | SCR_014281 | 2026-08-08 12:00:08 | 269 | ||||||||||
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Seahorse Wave Resource Report Resource Website 100+ mentions |
Seahorse Wave (RRID:SCR_014526) | software resource, software application, data management software, data analysis software, data processing software | Software to manage Seahorse XFe24 Analyzer, which measures OCR and ECAR of live cells in a 24-well plate format. Users can create and modify assay templates and analyze and manage data. | hardware management software, seahorse, xf data analysis, live cells | has parent organization: Agilent Technologies | http://www.agilent.com/cs/pubimages/misc/User_Guide_Wave_Desktop_2-3.pdf | SCR_014526 | 2026-08-08 12:00:12 | 104 | ||||||||||
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pyLMM Resource Report Resource Website 10+ mentions |
pyLMM (RRID:SCR_014525) | software resource, software application, data analysis software, standalone software, data processing software | A Python package for doing linear mixed model associations in genome wide association studies (GWAS). The software corrects for population structure using EMMA. | python, data analysis software, linear mixed model, genome wide association studies, gwas, lmm, emma | DOI:10.1534/genetics.107.080101 | Install using pip | SCR_014525 | 2026-08-08 12:00:32 | 12 | ||||||||||
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VitalView Software Resource Report Resource Website 10+ mentions |
VitalView Software (RRID:SCR_014497) | data acquisition software, software resource, software application, data analytics software, data processing software | A data acquisition and analysis software program. The program collects data from sensors and receivers and displays graphical data analysis as well as descriptive statistics. | data acquisition, data analysis | PMID:12213503 | Commercial | SCR_014497 | 2026-08-08 12:00:12 | 16 | ||||||||||
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GUID Tool Resource Report Resource Website 1+ mentions |
GUID Tool (RRID:SCR_014530) | software resource, data access protocol, web service | A customized software application that generates a Global Unique Identifier for each study participant. The GUID is a universal subject ID that allows researchers to share data specific to a study participant without exposing personally identifiable information (PII). The GUID has been approved by the NIH Office of General Counsel. | web service, universal subject id | is hosted by: NIMH Data Archive | For use when collaborating and sharing information | SCR_014530 | 2026-08-08 12:00:32 | 3 | ||||||||||
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LANDMark BioBanks Resource Report Resource Website 1+ mentions |
LANDMark BioBanks (RRID:SCR_014534) | data or information resource, material storage repository, biospecimen repository, biobank, data set, service resource, storage service resource | A repository of human tissue samples collected during the LANDMark study (Longitudinal Assessment of Neuropathy in Diabetes using novel ophthalmic markers). The LANDMark Biobank longitudinal dataset contains blood and tissue (skin) samples and matching detailed phenotypic data of three microvascluar complications of type 1 diabetes: neuropathy, nephropathy and retinopathy. | biospecimen repository, data set, type 1 diabetes, biobank, human tissue, landmark study, longitudinal data set, blood, skin, neuropathy, nephropathy, retinopathy | is listed by: NIDDK Information Network (dkNET) | Type 1 diabetes, Diabetes | Available to the research community, Apply to the Tissue Access Committee to access tissue samples | SCR_014534 | 2026-08-08 12:00:26 | 2 | |||||||||
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Mercator Resource Report Resource Website 500+ mentions |
Mercator (RRID:SCR_014493) | software resource, software application, data analysis software, data processing software | A software package for quantification of histological sections. This software performs functions including: management and analysis of regions of interest, annotations, statistical analysis, and 3D visualization. These results are edited in an Excel-compatible spreadsheet. | histology analysis, image analysis, statistical analysis, 3d visualization, excel | Commercial | SCR_014493 | 2026-08-08 12:00:25 | 692 | |||||||||||
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ImageMagick Resource Report Resource Website 100+ mentions |
ImageMagick (RRID:SCR_014491) | image processing software, software resource, software application, data processing software | Software suite for creating, editing, composing, and converting bitmap images. It can read and write images in over 200 formats including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. The user can use this software to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves. | image editing, image processing software, image analysis software, bitmap, adjust image colors, bezier curves | is listed by: Debian | Restricted | https://sources.debian.org/src/imagemagick/ | SCR_014491 | 2026-08-08 12:00:32 | 140 | |||||||||
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pubatlas.org Resource Report Resource Website 1+ mentions |
pubatlas.org (RRID:SCR_014538) | software resource, software application, data visualization software, data processing software | A program that searches PubMed to generate a heat map using a user's search terms. It also allows you to see over the years how many publications there are with the user's search term(s). | atlas, pubmed, heat map, search term, data visualization | PMID:21347177 | SCR_014538 | PubAtlas: Association Explorer, PubAtlas | 2026-08-08 12:00:12 | 4 | ||||||||||
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NIRStar Resource Report Resource Website 50+ mentions |
NIRStar (RRID:SCR_014540) | data acquisition software, software resource, software application, data processing software | Commercial software tool designed to function as a multiplatform instrument controlling environment for NIRx products. Its features include the ability to run full or partial sensing configurations, montage views and viewing options, and a real-time system status reporting display. | multiplatform, instrument controlling environment, investigational, paradigm, imaging system, data acquisition software | has parent organization: NIRx NIRS Neuroimaging | Commercially available | SCR_014540 | NIRStar - NIRS Acquisition Software by NIRx, NIRStar, NIRS Acquisition Software by NIRx | 2026-08-08 12:00:32 | 57 | |||||||||
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Preclinical Data Forum Network Resource Report Resource Website 1+ mentions |
Preclinical Data Forum Network (RRID:SCR_014545) | forum, data or information resource, discussion, narrative resource | A forum for preclinical data sharing and interpretation to enhance its utility for clinical research and development. The forum allows researchers to communicate and collaborate on modern preclinical issues and data sharing. | forum, network, preclinical, research and development, data sharing | has parent organization: ECNP | DOI:10.1016/j.euroneuro.2015.05.011 | Available to the research community | SCR_014545 | Preclinical Data Forum Network of the ECNP, Preclinical Data Forum Network of the European College of Neuropsychopharmacology, European College of Neuropsychopharmacology - Preclinical Data Forum Network | 2026-08-08 12:00:32 | 1 | ||||||||
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Cell Line Authentication Testing Resource Report Resource Website 1+ mentions |
Cell Line Authentication Testing (RRID:SCR_014504) | CLA | quality control testing; authentication testing | A material analysis service of the commercial organization Genetica DNA Laboratories which provides authentication of human cancer cell lines, stem cell lines and xenografts utilizing STR DNA technology. | str profiling, cell line authentication, genetica, cancer cell line, stem cell line, xenograft | is related to: Genetica DNA Laboratories | PMID:20614197 | Available to the research community, Commercial | SCR_014504 | Genetica DNA Laboratories Cell Line Authentication, cell line identification testing; cell authentication | 2026-08-08 12:00:25 | 4 | |||||||
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International Geo Sample Number Resource Report Resource Website 1+ mentions |
International Geo Sample Number (RRID:SCR_014505) | IGSN | data or information resource, standard specification, production service resource, narrative resource, international standard specification, service resource, identifier resolution | A persistent unique identifier for samples and specimens collected from the natural environment. IGSNs are created by the user and are case sensitive. They should be concise, machine readable, and non-derivable to ensure originality. IGSNs were created and are organized by the IGSN e.V., whose goal is to implement and promote standard methods for locating, identifying, and citing physical samples with confidence by operating an international IGSN registration service with a distributed infrastructure for use by and benefit to its members. | identifier, natural environment, geology, unique, identifying system | Available to participating members, IGSNs must be tagged in manuscripts | http://igsn.github.io http://igsn.github.io/syntax | SCR_014505 | International GeoSample Number, International Geo Sample Number (IGSN) | 2026-08-08 12:00:32 | 2 | ||||||||
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I-TASSER Resource Report Resource Website 1000+ mentions |
I-TASSER (RRID:SCR_014627) | software resource, software application, data analysis software, data processing software | Web server as integrated platform for automated protein structure and function prediction. Used for protein 3D structure prediction. Resource for automated protein structure prediction and structure-based function annotation. | Automated prediction, protein structure prediction, protein function prediction, protein 3D structure, amino acid sequence, alignment, simulation, 3D atomic model, protein, bio.tools |
is listed by: bio.tools is listed by: Debian is listed by: SoftCite has parent organization: University of Michigan; Ann Arbor; USA has parent organization: University of Kansas; Kansas; USA |
NIGMS GM083107; NIGMS GM084222 |
DOI:10.1186/1471-2105-9-40 DOI:10.1093/nar/gkv342 PMID:20360767 PMID:18215316 |
Free, Available for download, Freely available | biotools:i-tasser, SCR_018803 | https://bio.tools/i-tasser | SCR_014627 | Iterative Threading Assembly Refinement, Iterative Threading ASSEmbly Refinement | 2026-08-08 12:00:33 | 3874 | |||||
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GenStat Resource Report Resource Website 1000+ mentions |
GenStat (RRID:SCR_014595) | software resource | A statistical software which can be used for basic statistics, experimental design, sample size calculations, and analysis of linear mixed models, time series, and spatial analysis. | statistics, statistical, experimental design, linear mixed model, time series, spatial, size calculation, sample size | SCR_014595 | 2026-08-08 12:00:14 | 1747 | ||||||||||||
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7500 Real-Time PCR Software Resource Report Resource Website 10+ mentions |
7500 Real-Time PCR Software (RRID:SCR_014596) | data acquisition software, software resource, software application, data processing software | A software used to control and operate the Applied Biosystems 7500 Real-Time PCR system. | pcr, applied biosystem, control, operate, hardware management software, systems management software | Commercial, Paired with a PCR system | SCR_014596 | Applied Biosystems 7500 Real-Time PCR Software, 7500 Real Time PCR Software | 2026-08-08 12:00:27 | 43 | ||||||||||
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Thermo Xcalibur Resource Report Resource Website 5000+ mentions |
Thermo Xcalibur (RRID:SCR_014593) | data acquisition software, software resource, software application, data processing software | A software which acquires and processes data sets, primarily through the Xcalibur system. | data acquisition software, thermo fisher, xcalibur, excalibur, data set | SCR_014593 | 2026-08-08 12:00:27 | 8269 |
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