Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
LIPID MAPS Structure Database Resource Report Resource Website 10+ mentions |
LIPID MAPS Structure Database (RRID:SCR_003817) | LMSD | database, data or information resource | Collection of structures and annotations of biologically relevant lipids that contains unique lipid structures. Structures of lipids from : LIPID MAPS Consortium's core laboratories and partners; lipids identified by LIPID MAPS experiments; biologically relevant lipids manually curated from LIPID BANK, LIPIDAT, Lipid Library, Cyberlipids, ChEBI and other public sources; novel lipids submitted to peer-reviewed journals; and computationally generated structures for appropriate classes. All the lipid structures adhere to the structure drawing rules proposed by the LIPID MAPS consortium. A number of structure viewing options are offered: gif image (default), Chemdraw (requires Chemdraw ActiveX/Plugin), MarvinView (Java applet) and JMol (Java applet). All lipids have been classified using the LIPID MAPS Lipid Classification System. Each lipid structure has been assigned a LIPID MAPS ID (LM_ID) which reflects its position in the classification hierarchy. In addition to a classification-based retrieval of lipids, users can search using either text-based or structure-based search options. | fatty acyl, glycerolipid, glycerophospholipid, sphingolipid, sterol lipid, prenol lipid, sacccharolipid, polyketide, lipid, structure, image, annotation, metabolomics | has parent organization: LIPID Metabolites And Pathways Strategy | NIGMS | PMID:17098933 | Public, Free, Acknowledgement required, Non-commercial, Copyrighted | nlx_158117 | SCR_003817 | LIPID MAPS Structure Database (LMSD) | 2026-08-08 12:03:44 | 24 | |||||
|
LINCS Information Framework Resource Report Resource Website 1+ mentions |
LINCS Information Framework (RRID:SCR_003937) | database, data or information resource | LIFE search engine contains data generated from LINCS Pilot Phase, to integrate LINCS content leveraging semantic knowledge model and common LINCS metadata standards. LIFE makes LINCS content discoverable and includes aggregate results linked to Harvard Medical School and Broad Institute and other LINCS centers, who provide more information including experimental conditions and raw data. Please visit LINCS Data Portal. | bioassay, cell, small molecule, kinase protein, compound, cell, gene, metadata standard, cell line, primary cell, rnai reagent, rnai, reagent, protein reagent, protein, antibody reagent, antibody, perturbagen, growth factor, ligand, linked data, organ, disease, data set |
uses: HMS LINCS Database uses: Bioassay Ontology uses: Molecular Libraries Program is related to: Broad Institute is related to: Harvard Medical School; Massachusetts; USA is related to: Columbia University; New York; USA is related to: Yale University; Connecticut; USA is related to: Arizona State University; Arizona; USA has parent organization: University of Miami; Florida; USA |
NHLBI U01 HL111561; NHGRI |
PMID:29140462 | Free, Freely available | nlx_158348 | http://dev3.ccs.miami.edu:8080/datasets-beta/ | http://lifekb.org/ | SCR_003937 | lifekb, LIFE LINCS Information Framework | 2026-08-08 12:03:44 | 1 | ||||
|
BIND Resource Report Resource Website 100+ mentions |
BIND (RRID:SCR_003576) | BIND | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 17, 2022. Designed to capture protein function, defined at molecular level as set of other molecules with which protein interacts or reacts along with molecular outcome. Archives biomolecular interaction, complex and pathway information. A web-based system is available to query, view and submit records. BIND continues to grow with the addition of individual submissions as well as interaction data from the PDB and a number of large-scale interaction and complex mapping experiments using yeast two hybrid, mass spectrometry, genetic interactions and phage display. | interaction, protein, protein-protein interaction, small molecule-protein, nucleic acid-protein, small molecule, nucleic acid |
is related to: Interaction Reference Index is related to: ConsensusPathDB is related to: Christopher Hogues Research Lab at the National University of Singapore is related to: MPIDB is related to: PSICQUIC Registry is related to: Agile Protein Interactomes DataServer works with: IMEx - The International Molecular Exchange Consortium |
PMID:12519993 | THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_11393 | http://bind.ca/ | SCR_003576 | Biomolecular Interaction Network Database | 2026-08-08 12:03:44 | 181 | |||||
|
Multiple Myeloma Genomics Portal Resource Report Resource Website 1+ mentions |
Multiple Myeloma Genomics Portal (RRID:SCR_003722) | MMGP | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 6, 2023. Database providing access and limited analysis to the MMGP portal data sets. These include the MMRC funded reference array comparative genomic hybridization (aCGH) and gene expression data and additional public multiple myeloma datasets. The MMGP will be updated with new features such as additional data and analysis tools as they become available. | gene, genomics, mutation, single-nucleotide polymorphism, array comparative genomic hybridization, gene expression, resequencing, rnai, sample annotation, differential expression |
is used by: MMRF CoMMpass Study has parent organization: Broad Institute |
Multiple myeloma | Multiple Myeloma Research Foundation | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157900 | SCR_003722 | MMRC Multiple Myeloma Genomics Portal | 2026-08-08 12:03:56 | 3 | |||||
|
3DSwap Resource Report Resource Website 1+ mentions |
3DSwap (RRID:SCR_004133) | database, data or information resource | Curated knowledegbase of protein structures that are reported to be involved in 3-dimensional domain swapping. 3DSwap provides literature curated information and structure related information about 3D domain swapping in proteins. Information about swapping, hinge region, swapped region, extent of swapping, etc. are extracted from original research publications after extensive literature curation. | protein structure, protein, structure, 3d domain swapping, function, sequence, domain swap, 3d spatial image | has parent organization: Tata Institute of Fundamental Research; Mumbai; India | Tata Institute of Fundamental Research; Mumbai; India ; National Centre for Biological Sciences ; Wellcome Trust |
PMID:21959866 PMID:21592079 |
nlx_143564 | SCR_004133 | 3DSwap: Knowledgebase of 3D Domain Swapping in Proteins, 3DSwap - Knowledgebase of proteins involved in 3D domain swapping, 3D Swap, 3DSwap Database | 2026-08-08 12:03:57 | 5 | |||||||
|
HapMap 3 and ENCODE 3 Resource Report Resource Website 1+ mentions |
HapMap 3 and ENCODE 3 (RRID:SCR_004563) | HapMap 3 and ENCORE 3 | database, data or information resource | Draft release 3 for genome-wide SNP genotyping and targeted sequencing in DNA samples from a variety of human populations (sometimes referred to as the HapMap 3 samples). This release contains the following data: * SNP genotype data generated from 1184 samples, collected using two platforms: the Illumina Human1M (by the Wellcome Trust Sanger Institute) and the Affymetrix SNP 6.0 (by the Broad Institute). Data from the two platforms have been merged for this release. * PCR-based resequencing data (by Baylor College of Medicine Human Genome Sequencing Center) across ten 100-kb regions (collectively referred to as ENCODE 3) in 712 samples. Since this is a draft release, please check this site regularly for updates and new releases. The HapMap 3 sample collection comprises 1,301 samples (including the original 270 samples used in Phase I and II of the International HapMap Project) from 11 populations, listed below alphabetically by their 3-letter labels. Five of the ten ENCODE 3 regions overlap with the HapMap-ENCODE regions; the other five are regions selected at random from the ENCODE target regions (excluding the 10 HapMap-ENCODE regions). All ENCODE 3 regions are 100-kb in size, and are centered within each respective ENCODE region. The HapMap 3 and ENCORE 3 data are downloadable from the ftp site. | human, gene, genotype, sequence, single nucleotide polymorphism, dna, software |
is listed by: 3DVC is related to: NHGRI Sample Repository for Human Genetic Research has parent organization: Baylor University; Texas; USA |
Wellcome Trust ; NHGRI ; NIDCD |
nlx_143820 | http://www.hgsc.bcm.tmc.edu/project-medseq-hm-hapmap3encode3.hgsc?pageLocation=hapmap3encode3 | SCR_004563 | 2026-08-08 12:03:47 | 3 | |||||||
|
CAS REGISTRY Resource Report Resource Website 1+ mentions |
CAS REGISTRY (RRID:SCR_004558) | CAS | database, data or information resource | CAS REGISTRY, the gold standard for substance information, is the only integrated, comprehensive source of chemical information from a full range of disclosed material including patents, journals, and reputable web sources. When you need to positively identify a chemical substance, you can rely on the authoritative source for chemical names and structures of CAS REGISTRY. CAS databases are curated and quality-controlled by CAS scientists, and recognized by chemical and pharmaceutical companies, universities, government organizations, and patent offices around the world as authoritative. By combining these databases with advanced search and analysis technologies (SciFinder, STN, and Science IP products and services), CAS delivers the most current, complete, and cross-linked secure digital information environment for scientific discovery. You can identify your substance of interest by its CAS Registry Number, which is the best way to identify a substance, regardless of what name you have for it. You can also use CAS REGISTRY to locate * literature references to the substance * experimental and predicted property data (boiling and melting points, etc.) * commercial availability * preparative methods * spectra * regulatory information from international sources | molecule, organic, inorganic, substance | nlx_55136 | SCR_004558 | CAS REGISTRY - The gold standard for substance information, Chemical Abstracts Service | 2026-08-08 12:03:54 | 4 | |||||||||
|
EBI Dbfetch Resource Report Resource Website 1+ mentions |
EBI Dbfetch (RRID:SCR_004393) | database, data or information resource | Dbfetch is an acronym for database fetch. Dbfetch provides an easy way to retrieve entries from various databases at the EBI in a consistent manner and allows you to retrieve up to 50 entries at a time from various up-to-date biological databases. It can be used from any browser as well as well as within a web-aware scripting tool that uses wget, lynx or similar. From the browser, follow these instructions... * Select a database: If you are using the first form to paste your search items: choose a database name from this form. If you are using the second form to upload your search items: the database name is included at the beginning of each line line of the upload file followed by a colon. * Enter search terms: These MUST BE in the appropriate database format, up to 200 search items can be queried in one run. If you are using the first form: separate search items with a comma or space. If you are using the second form: separate search items with a new line. * Choose an output format: Here you can choose the simpler fasta format, or the databases'''' default format for the chosen database. * Style: You can get your results as text or html. * Retrieve! - You are now ready to fetch your results, by pressing the Retrieve button. | database browsing, fetch, tool, gold standard |
is related to: WSDbfetch (SOAP) has parent organization: European Bioinformatics Institute |
nlx_40225 | SCR_004393 | Database fetch, emblfetch, Dbfetch, EMBL fetch | 2026-08-08 12:03:58 | 3 | |||||||||
|
IntegromeDB Resource Report Resource Website 1+ mentions |
IntegromeDB (RRID:SCR_004620) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 26, 2016. Search engine that integrates over 100 curated and publicly contributed data sources and provides integrated views on the genomic, proteomic, transcriptomic, genetic and functional information currently available. Information featured in the database includes gene function, orthologies, gene expression, pathways and protein-protein interactions, mutations and SNPs, disease relationships, related drugs and compounds. | catalog, search engine, gene, protein, gene regulation, gene expression, protein-protein interaction, pathway, metagenomics, mutation, disease, transcriptional regulation, genomics, transcriptomics, genetics, function, interaction, ortholog |
is related to: ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters has parent organization: University of California at San Diego; California; USA |
NIH ; NIGMS R01 GM084881 |
PMID:22260095 PMID:20427517 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_63198 | SCR_004620 | Integrome DB | 2026-08-08 12:03:48 | 3 | ||||||
|
Entrez GEO Profiles Resource Report Resource Website 1000+ mentions |
Entrez GEO Profiles (RRID:SCR_004584) | database, data or information resource | The GEO Profiles database stores gene expression profiles derived from curated GEO DataSets. Each Profile is presented as a chart that displays the expression level of one gene across all Samples within a DataSet. Experimental context is provided in the bars along the bottom of the charts making it possible to see at a glance whether a gene is differentially expressed across different experimental conditions. Profiles have various types of links including internal links that connect genes that exhibit similar behaviour, and external links to relevant records in other NCBI databases. GEO Profiles can be searched using many different attributes including keywords, gene symbols, gene names, GenBank accession numbers, or Profiles flagged as being differentially expressed. | gold standard | has parent organization: NCBI | nlx_57723 | http://www.ncbi.nlm.nih.gov/geo/ | SCR_004584 | GEO Profiles, Gene Expression Omnibus Profiles | 2026-08-08 12:03:47 | 2400 | ||||||||
|
LinkedCT Resource Report Resource Website 1+ mentions |
LinkedCT (RRID:SCR_004585) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023.The Linked Clinical Trials (LinkedCT) project aims at publishing the first open Semantic Web data source for clinical trials data. The data exposed by LinkedCT is generated by (1) transforming existing data sources of clinical trials into RDF, and (2) discovering links between the records in the trials data and several other data sources. You may download static data dumps. The LinkedCT data space is published according to the principles of publishing Linked Data. These principles greatly enhance adaptability and usability of data on the web. Each entity in LinkedCT is identified by a unique HTTP dereferenceable Uniform Resource Identifier (URI). When the URI is looked up, related RDF statements about the entity is returned in HTML or RDF/XML based on the user''s agent. Moreover, a SPARQL endpoint is provided as the standard access method for RDF data. | has parent organization: ClinicalTrials.gov | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_57779 | SCR_004585 | LinkedCT.org, LinkedCT Live Databrowse, Linked Clinical Trials | 2026-08-08 12:03:59 | 2 | |||||||||
|
SGD Resource Report Resource Website 1000+ mentions |
SGD (RRID:SCR_004694) | SGD, SGD LOCUS, SGD REF | database, data or information resource | A curated database that provides comprehensive integrated biological information for Saccharomyces cerevisiae along with search and analysis tools to explore these data. SGD allows researchers to discover functional relationships between sequence and gene products in fungi and higher organisms. The SGD also maintains the S. cerevisiae Gene Name Registry, a complete list of all gene names used in S. cerevisiae which includes a set of general guidelines to gene naming. Protein Page provides basic protein information calculated from the predicted sequence and contains links to a variety of secondary structure and tertiary structure resources. Yeast Biochemical Pathways allows users to view and search for biochemical reactions and pathways that occur in S. cerevisiae as well as map expression data onto the biochemical pathways. Literature citations are provided where available. | database, yeast, pathway, analysis, gene, nomenclature, predicted sequence, fungi, functional relationship, protein structure, bio.tools, FASEB list |
uses: InterMOD is used by: NIF Data Federation is used by: PhenoGO is listed by: re3data.org is listed by: OMICtools is listed by: InterMOD is listed by: bio.tools is listed by: Debian is affiliated with: InterMOD is related to: AmiGO is related to: Yeast Search for Transcriptional Regulators And Consensus Tracking is related to: HomoloGene is related to: TXTGate is related to: PhenoGO has parent organization: Stanford University School of Medicine; California; USA has parent organization: Stanford University; Stanford; California is parent organization of: Ascomycete Phenotype Ontology is parent organization of: SGD Gene Ontology Slim Mapper is organization facet of: Alliance of Genome Resources |
NHGRI 5P41HG001315-11; NHGRI 5P41HG002273-05; NHGRI 5U41HG001315-18; NHGRI 2U41HG002273-13; NHGRI 5R01HG004834-04 |
PMID:24265222 PMID:12519985 PMID:9399804 |
Free for academic use, The community can contribute to this resource, Non-commercial | nif-0000-03456, biotools:sgd, r3d100010419, OMICS_01661 | https://bio.tools/sgd, https://doi.org/10.17616/R3N313 | http://genome-www.stanford.edu/Saccharomyces/ | SCR_004694 | SGD LOCUS, Saccharomyces Genome Database, SGD REF | 2026-08-08 12:03:48 | 1950 | |||
|
ZFIN Antibody Database Resource Report Resource Website |
ZFIN Antibody Database (RRID:SCR_004729) | database, data or information resource | The ZFIN Antibody Database is a database of zebrafish gene expression antibodies. | monoclonal, polyclonal, antibody, antigen, gene expression | has parent organization: Zebrafish Information Network (ZFIN) | PMID:20836073 PMID:29761463 |
nlx_74236 | SCR_004729 | ZFIN Gene Expression Antibodies, ZFIN Antibodies | 2026-08-08 12:04:00 | 0 | ||||||||
|
Pfam Resource Report Resource Website 10000+ mentions |
Pfam (RRID:SCR_004726) | database, data or information resource | A database of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Users can analyze protein sequences for Pfam matches, view Pfam family annotation and alignments, see groups of related families, look at the domain organization of a protein sequence, find the domains on a PDB structure, and query Pfam by keywords. There are two components to Pfam: Pfam-A and Pfam-B. Pfam-A entries are high quality, manually curated families that may automatically generate a supplement using the ADDA database. These automatically generated entries are called Pfam-B. Although of lower quality, Pfam-B families can be useful for identifying functionally conserved regions when no Pfam-A entries are found. Pfam also generates higher-level groupings of related families, known as clans (collections of Pfam-A entries which are related by similarity of sequence, structure or profile-HMM). | database, clan, structure, sequence, protein family, domain, bio.tools, FASEB list |
is used by: Mutation Annotation and Genomic Interpretation is used by: MobiDB is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: Conserved Domain Database is related to: SUPFAM is related to: DBD: Transcription factor prediction database is related to: DOMINE: Database of Protein Interactions is related to: GeneSpeed- A Database of Unigene Domain Organization is related to: Eukaryotic Linear Motif is related to: TopoSNP is related to: GOTaxExplorer is related to: TrED is related to: ProOpDB is related to: Algal Functional Annotation Tool has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
EMBL core funds ; Howard Hughes Medical Institute ; BBSRC BB/L024136/1; Wellcome Trust 108433/Z/15/Z |
PMID:24288371 PMID:19920124 |
Acknowledgement requested, Available via FTP | biotools:pfam, OMICS_01696, r3d100012850, nlx_72111 | https://bio.tools/pfam, https://doi.org/10.17616/R3QV4F | http://pfam.sanger.ac.uk/ | SCR_004726 | Pfam Database, Protein Families Database, PFAM, Pfam protein families database | 2026-08-08 12:04:00 | 17424 | ||||
|
Anopheles gambiae (African malaria mosquito) genome view Resource Report Resource Website |
Anopheles gambiae (African malaria mosquito) genome view (RRID:SCR_004402) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. A database for the Anopheles gambiae str. PEST genome that was sequenced using a whole genome shotgun approach. The database aims to contribute to the understanding of mosquito genome structure and organization and will assist the development of malaria control strategies and improved anti-malarial drugs and vaccines. Sequences were generated and assembled into contigs for submission to GenBank. | genome, blast, genome assembly, mosquito, sequence, malaria, contig |
is related to: GenBank has parent organization: NCBI |
Malaria | National Institute of Allergy and Infectious Diseases | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_41106 | SCR_004402 | African malaria mosquito genome view, Anopheles gambiae genome view | 2026-08-08 12:03:58 | 0 | ||||||
|
NEWT Resource Report Resource Website 10+ mentions |
NEWT (RRID:SCR_004477) | NEWT | database, data or information resource | NEWT is the taxonomy database maintained by the UniProt group. It integrates taxonomy data compiled in the NCBI database and data specific to the UniProt Knowledgebase. Browse by hierarchy, List all, or Complete proteomes. Organisms are classified in a hierarchical tree structure. Our taxonomy database contains every node (taxon) of the tree. UniProtKB taxonomy data is manually curated: next to manually verified organism names, we provide a selection of external links, organism strains and viral host information. Species with protein sequences stored in the UniProt Knowledgebase are named according to UniProt nomenclature. We endeavour to maintain a list of manually curated species names for which protein sequence data is available. In particular, we have adopted a systematic convention for naming viral and bacterial strains and isolates. Links to external sites are chosen by the UniProt taxonomy team and show pictures and various scientific data of interest (taxonomy, biology, physiology,...). | archaea, bacteria, eukaryota, viruses, cellular organism, sequence, viroid, gold standard, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: NCBI Taxonomy has parent organization: UniProt |
PMID:12824428 | nlx_46189, biotools:newt | https://bio.tools/newt | http://www.ebi.ac.uk/newt/ | SCR_004477 | UniProtKB taxonomy database, UniProt Taxonomy Database, UniProt Taxonomy | 2026-08-08 12:03:58 | 23 | |||||
|
Selectome: a Database of Positive Selection Resource Report Resource Website 1+ mentions |
Selectome: a Database of Positive Selection (RRID:SCR_004542) | database, data or information resource | Database of positive selection based on a rigorous branch-site specific likelihood test. Positive selection is detected using CODEML on all branches of animal gene trees. | duplication, events, gene, animal, positive selection, speciation, p-value, speciation, duplication, selectome, phylogenetic, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: University of Lausanne; Lausanne; Switzerland |
PMID:24225318 | nif-0000-03451, biotools:selectome | https://bio.tools/selectome | SCR_004542 | Selectome | 2026-08-08 12:03:54 | 9 | |||||||
|
SCRIPDB Resource Report Resource Website |
SCRIPDB (RRID:SCR_008922) | SCRIPDB | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 2, 2025. Database of chemicals and reactions inside of US patents (2001 - 2011). SCRIPDB provides the full original patent text, reactions and relationships described within any individual patent, in addition to the molecular files common to structural databases. The patent literature is a rich catalog of biologically relevant chemicals; many public and commercial molecular databases contain the structures disclosed in patent claims. However, patents are an equally rich source of metadata about bioactive molecules, including mechanism of action, disease class, homologous experimental series, structural alternatives, or the synthetic pathways used to produce molecules of interest. Unfortunately, this metadata is discarded when chemical structures are deposited separately in databases. SCRIPDB is a chemical structure database designed to make this metadata accessible. The SCRIPDB information is valuable in medical text mining, chemical image analysis, reaction extraction and in silico pharmaceutical lead optimization. SCRIPDB may be searched by exact chemical structure, substructure or molecular similarity and the results may be restricted to patents describing synthetic routes. | chemical, reaction, patent, chemical structure | has parent organization: University of Toronto; Ontario; Canada | Canada Research Chair Program ; Ontario Ministry of Health and Long Term Care ; Canada Foundation for Innovation 12301; Canada Foundation for Innovation 203383; Ontario Research Fund GL2-01-030 |
PMID:22067445 | THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_151638, r3d100012730 | https://doi.org/10.17616/R33V4V | SCR_008922 | Scrip DB | 2026-08-08 12:04:23 | 0 | ||||
|
LSID Web Resolver Resource Report Resource Website 10+ mentions |
LSID Web Resolver (RRID:SCR_009737) | database, data or information resource | A web based life sciences identifier (LSID) resolution service allows you to view the data and metadata of an LSID with a web browser. This service will display the metadata, formatted as a standard webpage, for any LSID. | nlx_156874 | SCR_009737 | 2026-08-08 12:04:17 | 12 | ||||||||||||
|
DNAtraffic Resource Report Resource Website |
DNAtraffic (RRID:SCR_008886) | DNAtraffic | database, data or information resource | DNAtraffic database is dedicated to be an unique comprehensive and richly annotated database of genome dynamics during the cell life. DNAtraffic contains extensive data on the nomenclature, ontology, structure and function of proteins related to control of the DNA integrity mechanisms such as chromatin remodeling, DNA repair and damage response pathways from eight model organisms commonly used in the DNA-related study: Homo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Escherichia coli and Arabidopsis thaliana. DNAtraffic contains comprehensive information on diseases related to the assembled human proteins. Database is richly annotated in the systemic information on the nomenclature, chemistry and structure of the DNA damage and drugs targeting nucleic acids and/or proteins involved in the maintenance of genome stability. One of the DNAtraffic database aim is to create the first platform of the combinatorial complexity of DNA metabolism pathway analysis. Database includes illustrations of pathway, damage, protein and drug. Since DNAtraffic is designed to cover a broad spectrum of scientific disciplines it has to be extensively linked to numerous external data sources. Database represents the result of the manual annotation work aimed at making the DNAtraffic database much more useful for a wide range of systems biology applications. DNAtraffic database is freely available and can be queried by the name of DNA network process, DNA damage, protein, disease, and drug. | dna, cell cycle, genome, nomenclature, ontology, structure, function, protein, chromatin remodeling, dna repair, damage response pathway, pathway, damage, drug, annotation, disease, dna network process, dna damage, gene sequence, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Polish Academy of Sciences Warsaw; Warsaw; Poland |
Norwegian Financial Mechanism PNRF-143-AI-1/07; Polish Ministry of Science and Higher Education N N301 165835 |
PMID:22110027 | Free | biotools:dnatraffic, nlx_151312 | https://bio.tools/dnatraffic | SCR_008886 | DNAtraffic database | 2026-08-08 12:04:24 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
