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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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RELION Resource Report Resource Website 100+ mentions |
RELION (RRID:SCR_016274) | software resource, software application, data analysis software, standalone software, data processing software | Software for determination of cryo-EM structures. It employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy. | cryo, cryogenic, cryo em, determination, analysis, bayesian, statistic, map, maximum a posteriori, electron, cryomicroscopy |
is listed by: Debian is listed by: OMICtools |
UK Medical Research Council | PMID:23000701 | Free, Available for download, Tutorial available | OMICS_15597 | https://sources.debian.org/src/relion-bin+mpi+gui/ | SCR_016274 | RELION, REgularised LIkelihood OptimisatioN, RELION-3 | 2026-08-08 12:00:51 | 440 | |||||
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Vensim Resource Report Resource Website 10+ mentions |
Vensim (RRID:SCR_016394) | software resource, software application, simulation software | Simulation software for improving the performance of real systems. Used for developing, analyzing, and packaging dynamic feedback models. | performance, system, Ventana Systems Inc, model, modelling, analysis | Commercially available, Available for purchase | SCR_016394 | 2026-08-08 12:00:31 | 14 | |||||||||||
|
AngioTool Resource Report Resource Website 50+ mentions |
AngioTool (RRID:SCR_016393) | software resource, software application, data analysis software, data processing software | Software that performs quantitative analysis of angiogenesis. It specializes in quantitative assessment of various vessel morphometric and spatial parameters, including vessel length and density, branching index, lacunarity, etc. | vessel, angio, angiogenesis, characteristic, morphology | Biotechnology and Biological Sciences Research Council BB/C520712; MRC G0700740 |
PMID:22110636 | Open source, Free, Available for download | https://www.researchgate.net/publication/51824175_A_Computational_Tool_for_Quantitative_Analysis_of_Vascular_Networks | SCR_016393 | 2026-08-08 12:00:54 | 60 | ||||||||
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AphasiaBank Resource Report Resource Website 1+ mentions |
AphasiaBank (RRID:SCR_016317) | data or information resource, database, service resource, storage service resource, data repository | Shared database of multimedia interactions for the study of communication in aphasia.Access to the data in AphasiaBank is password protected and restricted to members of the AphasiaBank consortium group. | Multimedia, interaction, communication, aphasia | is recommended by: National Library of Medicine | NIDCD R01 -DC008524 | Restricted | SCR_016317 | , Aphasia Bank, AphasiaBank | 2026-08-08 12:00:52 | 9 | ||||||||
|
OmicsBean Resource Report Resource Website 100+ mentions |
OmicsBean (RRID:SCR_016322) | software resource, software application, data analysis software, data analytics software, data processing software | Software tool for multi-omics data analysis that can perform complex and personalized analysis. Network regulation and molecular mechanism models can be customized according to the requirements of the users. | GeneForHealth Biotech Inc (GFK), data, analysis, genome, proteome, metabolome, network, molecular, mechanism, model, collect, store, analytic, multi, omic | Commercially available, Demo available | SCR_016322 | 2026-08-08 12:00:30 | 189 | |||||||||||
|
BLINK Resource Report Resource Website 1+ mentions |
BLINK (RRID:SCR_016288) | software resource, software application, algorithm resource, data analysis software, data processing software | Software for next level of genome wide association studies with both individuals and markers in millions. The method releases the requirement that causative genes are evenly distributed on genome and consequently boosts statistical power. | GWAS, SNP, dataset, r, genome, bayesian, linkage, nested, keyway, statistic, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Tutorial available | biotools:BLINK | https://bio.tools/BLINK | SCR_016288 | BLINK (Bayesian-information and Linkage-disequilibrium Iteratively Nested Keyway) | 2026-08-08 12:00:52 | 2 | |||||||
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Nighres Resource Report Resource Website 1+ mentions |
Nighres (RRID:SCR_016287) | software toolkit, image analysis software, software resource, software application, data processing software | Software package for processing of high-resolution neuroimaging data. Nighres is a community-developed project that aims to make neuroscience data tools easier to install, use and extend. | neuroimaging, python, high-resolution, MRI, ultra-high, field, laminar, brain | Free, Available for download, Runs on Linux | http://nighres.readthedocs.io/en/latest/ | https://github.com/juhuntenburg/laminar_python | SCR_016287 | nighres | 2026-08-08 12:00:52 | 3 | ||||||||
|
ANNOgesic Resource Report Resource Website 10+ mentions |
ANNOgesic (RRID:SCR_016326) | software toolkit, software resource, software application, data analysis software, standalone software, data processing software | Software tool for bacterial/archaeal RNA-Seq based genome annotations. Used for integrating, detecting, predicting, and grouping RNA-Seq data. | bacterial, archaeal, RNA, sequencing, data, analysis, genome, annotation, statistic, visualization, protein, interaction, prediction, grouping, go, ontology, gene, differential, circular |
is related to: Infernal is related to: Vienna RNA is related to: Biopython is related to: MEME Suite - Motif-based sequence analysis tools is related to: Segemehl |
Free, Freely available, Available for download | SCR_016326 | 2026-08-08 12:00:52 | 10 | ||||||||||
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Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease Resource Report Resource Website 1+ mentions |
Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease (RRID:SCR_016282) | registration software, image analysis software, software resource, software application, data processing software | Software based on robust registration and simultaneous hippocampal segmentation and longitudinal marker classification of brain MRI of an arbitrary number of time points. The framework comprises two parts: a longitudinal segmentation and a longitudinal classification step. | longitudinal, segmentation, hippocampus, mri, atrophy, atlas, classification, matlab | Free, Available for download | SCR_016282 | 2026-08-08 12:00:52 | 1 | |||||||||||
|
HUMAnN2 Resource Report Resource Website 50+ mentions |
HUMAnN2 (RRID:SCR_016280) | HUMAnN2 | sequence analysis software, software resource, software application, data analysis software, data processing software | Software for profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data Used for millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. | microbe, matagenome, metatranscription, sequence, short, read, dna, rna, metabolism | Free, Available for download, Tutorial available, Acknowledgement requested | SCR_016280 | The HMP Unified Metabolic Analysis Network 2 | 2026-08-08 12:00:30 | 82 | |||||||||
|
SV-plaudit Resource Report Resource Website 1+ mentions |
SV-plaudit (RRID:SCR_016285) | image analysis software, software resource, software application, data analysis software, data processing software | Software for rapidly curating structural variant (SVs) predictions. SV-plaudit provides a pipeline for creating image views of genomic intervals, automatically storing them in the cloud, deploying a website to view/score them, and retrieving scores for analysis. | genomics, structural, variants, visualization, manual, curation, prediction, image, alignment | NHGRI K99 HG009532; NHGRI R01 HG006693; NIGMS R01 GM124355; NCI U24 CA209999 |
Free, Available for download | SCR_016285 | 2026-08-08 12:00:30 | 2 | ||||||||||
|
SIGEN Resource Report Resource Website 1+ mentions |
SIGEN (RRID:SCR_016284) | image reconstruction software, segmentation software, image analysis software, software resource, software application, data processing software | Software to extract and trace neuronal structure from confocal laser scanning microscope images. It performs the automatic reconstruction of neurons for image stacks and can generate compartmental models of neurons as swc file format data. | segmentation, neuron, confocal, laser, scan, microscopy, reconstruction, swc, confocal, laser, microscopy | is related to: ParaView | Free, Available for download | SCR_016284 | SImulation of Geometrical and Electrical properties of Neuron, SIGEN: SImulation of Geometrical and Electrical properties of Neuron | 2026-08-08 12:00:52 | 3 | |||||||||
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JAX Mice and Services Resource Report Resource Website 10+ mentions |
JAX Mice and Services (RRID:SCR_016408) | JAX, JAX MS, JMS, IMSR_JAX | biomaterial supply resource, material resource, organism supplier | Supplier of mice for research purposes. | RIN, Resource Information Network, mouse, strain, supply, research, repository, subject, genetic engineering, knockout, mice, gene, model, RRID Community Authority |
is listed by: International Mouse Strain Resource is listed by: Resource Information Network is related to: Knockout Mouse Project Repository at JAX is parent organization of: Diversity Outbred Database works with: International Mouse Strain Resource |
SCR_016408 | Mice and Services, JAX Mice, JAX Mouse Service, JAX Mice Service, JAX Mouse and Services | 2026-08-08 12:00:31 | 14 | |||||||||
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Shanghai Model Organisms Center Resource Report Resource Website 1+ mentions |
Shanghai Model Organisms Center (RRID:SCR_016407) | SMOC | biomaterial supply resource, material resource, organism supplier | Supplier of mice for research purposes. Provides technical services, model organisms, gene editing and decoding. | RIN, Resource Information Network, Shanghai Model Organisms Center Inc., mouse, strain, supply, research, repository, subject, genetic engineering, knockout, mice, gene, model, RRID Community Authority |
is listed by: Resource Information Network works with: International Mouse Strain Resource |
http://www.shmo.com.cn/English/, https://www.modelorg.com/en/ | SCR_016407 | Shanghai Model Organisms Center, Inc. SMOCShanghai Model Organisms Center, Shanghai Model, Shanghai Model Center, Shanghai Model Organism Center | 2026-08-08 12:00:54 | 2 | ||||||||
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National Resource Center for Mutant Mice Resource Report Resource Website 1+ mentions |
National Resource Center for Mutant Mice (RRID:SCR_016406) | NRCMM, MARIP | biomaterial supply resource, material resource, organism supplier | Supplier of mice for research purposes. | mouse, strain, supply, research, repository, subject, genetic engineering, knockout, mice, gene, model, transgenic | is listed by: International Mouse Strain Resource | SCR_016406 | National Resource Center for Mutant Mouse, Nanjing University Model Animal Research Institute, Model Animal Resource Information Platform, Model Animal Resource Imformation Platform | 2026-08-08 12:00:54 | 1 | |||||||||
|
Taconic Biosciences Resource Report Resource Website 100+ mentions |
Taconic Biosciences (RRID:SCR_016410) | TAC, TB | biomaterial supply resource, material resource, organism supplier | Supplier of mice for research purposes. | RIN, Resource Information Network, mouse, strain, supply, research, repository, subject, genetic engineering, knockout, mice, gene, model, transgenic, RRID Community Authority |
is listed by: Resource Information Network works with: International Mouse Strain Resource |
SCR_016410 | Taconic Mouse Supply, Taconic Mice, eTaconic, Taconic, Taconic Bioscience, Taconic Bio Sciences | 2026-08-08 12:00:54 | 232 | |||||||||
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GenPipes Resource Report Resource Website 10+ mentions |
GenPipes (RRID:SCR_016376) | software resource, software application, data analysis software, data processing software | Software for genomics and bioinformatics analysis. GenPipes includes several python pipelines that cover many genomics applications, such as RNASeq, ChIPSeq, DNASeq, WGBS, HiC, Metagenomics, PacBio assembly, etc. | workflow, management, system, genomics, bioinformatics, rnaseq, chipseq, dnaseq, hic, metagenomics, WGBS, PacBio, Assembly, C3G | has parent organization: McGill University; Montreal; Canada | Free, Available for download, Tutorial available | http://www.computationalgenomics.ca/tutorials/ | SCR_016376 | 2026-08-08 12:00:53 | 18 | |||||||||
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MxPro QPCR Resource Report Resource Website 500+ mentions |
MxPro QPCR (RRID:SCR_016375) | software resource, software application, data analysis software, data processing software | Software that performs data analysis algorithms for QPCR data. The software is included with the purchase of the Agilent MxPro QPCR System., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | pcr, qpcr, polymerase, qualitative, analysis, nucleic, acid, gene | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_016375 | MxPro QPCR Software | 2026-08-08 12:00:53 | 543 | ||||||||||
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MetaCyto Resource Report Resource Website 1+ mentions |
MetaCyto (RRID:SCR_016415) | software toolkit, software resource, software application, data analysis software, data processing software | Software tool for automated meta-analysis of mass and flow cytometry data. Provides functions for preprocessing, automated gating and meta-analysis of cytometry data and collection of cytometry data from the ImmPort database. | automated, analysis, meta, flow, cytometry, data, bio.tools |
is listed by: Bioconductor is listed by: NIDDK Information Network (dkNET) is listed by: bio.tools is listed by: Debian is related to: The Immunology Database and Analysis Portal (ImmPort) |
the National Institute of Allergy and Infectious Diseases HHSN272201200028C | Free, Available for download, Freely available | biotools:metacyto | https://bio.tools/metacyto | SCR_016415 | 2026-08-08 12:00:55 | 5 | |||||||
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Xenopus Express Resource Report Resource Website 1+ mentions |
Xenopus Express (RRID:SCR_016373) | XEP | biomaterial supply resource, material resource, organism supplier | Supplier of Frogs and Tadpoles for the scientific community. | RIN, Resource Information Network, xenopus, frog, tadpole, amphibian, supply, organism, diet, animal food, RRID Community Authority | is listed by: Resource Information Network | SCR_016373 | Xenopus Xpress | 2026-08-08 12:00:31 | 4 |
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