Searching across hundreds of databases
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Ontology of Clinical Research Resource Report Resource Website 1+ mentions |
Ontology of Clinical Research (RRID:SCR_010392) | OCRE | data or information resource, controlled vocabulary, ontology | Ontology to support systematic description of, and interoperable queries on, human studies and study elements. | owl | is listed by: BioPortal | nlx_157525 | SCR_010392 | 2025-05-15 10:39:39 | 1 | |||||||||
|
Taxonomic Rank Vocabulary Resource Report Resource Website |
Taxonomic Rank Vocabulary (RRID:SCR_010430) | TAXRANK | data or information resource, controlled vocabulary, ontology | A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms. | obo | is listed by: BioPortal | nlx_157606 | SCR_010430 | 2025-05-15 10:39:41 | 0 | |||||||||
|
Ontology of Geographical Region Resource Report Resource Website |
Ontology of Geographical Region (RRID:SCR_010398) | OGR | data or information resource, controlled vocabulary, ontology | Ontology that is used with other ontologies to represent the genetic susceptibility factors of diabetes. This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS. | owl | is listed by: BioPortal | Diabetes | nlx_157530 | SCR_010398 | 2025-05-15 10:39:40 | 0 | ||||||||
|
Taxonomy for Rehabilitation of Knee Conditions Resource Report Resource Website |
Taxonomy for Rehabilitation of Knee Conditions (RRID:SCR_010431) | TRAK | data or information resource, controlled vocabulary, ontology | Ontology that formally models information relevant for the rehabilitation of knee conditions. It provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice. | obo | is listed by: BioPortal | nlx_157607 | SCR_010431 | 2025-05-15 10:39:41 | 0 | |||||||||
|
Traditional Medicine Other Factors Value Set Resource Report Resource Website |
Traditional Medicine Other Factors Value Set (RRID:SCR_010437) | TM-OTHER-FACTORS | data or information resource, controlled vocabulary, ontology | Ontology of the value set for the Other Factors property of the International Classification of Traditional Medicine (ICTM). | owl | is listed by: BioPortal | nlx_157614 | SCR_010437 | 2025-05-15 10:39:41 | 0 | |||||||||
|
Tribolium Ontology Resource Report Resource Website |
Tribolium Ontology (RRID:SCR_010440) | TRON | data or information resource, controlled vocabulary, ontology | Ontology about the anatomical structures of the red flour beetle Tribolium castaneum in the developmental stages larva, pupa and adult. | obo | is listed by: BioPortal | nlx_157617 | SCR_010440 | 2025-05-15 10:39:41 | 0 | |||||||||
|
Plant Anatomy Resource Report Resource Website |
Plant Anatomy (RRID:SCR_010408) | PAE | data or information resource, controlled vocabulary, ontology | THIS RESOURCES IS NO LONGER IN SERVICE, documented on April 23, 2014. REPLACED BY: Plant Ontology (PO). A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. Note that this has been subsumed into the PO. This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant anatomical entity branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/ | obo |
is listed by: BioPortal has parent organization: Plant Ontology |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157553 | SCR_010408 | 2025-05-15 10:39:40 | 0 | ||||||||
|
NanoParticle Ontology Resource Report Resource Website 1+ mentions |
NanoParticle Ontology (RRID:SCR_010369) | NPO | data or information resource, controlled vocabulary, ontology | An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy. | owl | is listed by: BioPortal | Cancer | nlx_157497 | http://www.nano-ontology.org | SCR_010369 | 2025-05-15 10:39:38 | 1 | |||||||
|
National Cancer Institute Thesaurus Resource Report Resource Website |
National Cancer Institute Thesaurus (RRID:SCR_010370) | NCIT | data or information resource, controlled vocabulary, ontology | A vocabulary for clinical care, translational and basic research, and public information and administrative activities. | owl |
is used by: DisGeNET is listed by: BioPortal |
nlx_157498 | http://ncicb.nci.nih.gov/core/EVS | SCR_010370 | 2025-05-15 10:39:38 | 0 | ||||||||
|
Natural Products Ontology Resource Report Resource Website |
Natural Products Ontology (RRID:SCR_010373) | NATPRO | data or information resource, controlled vocabulary, ontology | An ontology for describing biological activities of natural products. | owl | is listed by: BioPortal | nlx_157501 | SCR_010373 | 2025-05-15 10:39:39 | 0 | |||||||||
|
Radiology Lexicon Resource Report Resource Website |
Radiology Lexicon (RRID:SCR_010418) | RADLEX | data or information resource, controlled vocabulary, ontology | A controlled terminology for radiology-a single unified source of radiology terms for radiology practice, education, and research. For license information see : http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/radlex_public_license_version_1-0-1.pdf Converted to use OWL format submissions | owl | is listed by: BioPortal | nlx_157567 | SCR_010418 | 2025-05-15 10:39:40 | 0 | |||||||||
|
Robert Hoehndorf Version of MeSH Resource Report Resource Website |
Robert Hoehndorf Version of MeSH (RRID:SCR_010419) | RH-MESH | data or information resource, controlled vocabulary, ontology | Ontology of a modified version of Medical Subjects Headings Thesaurus 2014, that is an OWL representation of MeSH so that it can be integrated with other ontologies represented in OWL. It contains all terms that are in MeSH and in the MeSH concept tree, including the pharmacological actions (represented as subclass relations). Concepts in the MeSH concept tree are merged with MeSH term ids. Note that, while this ontology is composed of MeSH terms, it does not correspond directly to UMLS MeSH. In particular, a single term in UMLS MeSH often results in multiple classes in this ontology. For example, in MeSH there is a single term with the label Heart. The internal code (unique identifier) for this term is A07.541. In this ontology there are two entirely different terms, both of which have the label Heart. The codes for these terms are A07.541 and D006321. | owl |
is listed by: BioPortal is related to: MeSH |
nlx_157577 | SCR_010419 | 2025-05-15 10:39:40 | 0 | |||||||||
|
Portfolio Management Application Resource Report Resource Website |
Portfolio Management Application (RRID:SCR_010411) | PMA | data or information resource, controlled vocabulary, ontology | Ontology of a system for tracking grants and producing reports - Users can access grant data through a query interface and a variety of pre-defined forms and reports. | owl | is listed by: BioPortal | nlx_157559 | SCR_010411 | 2025-05-15 10:39:40 | 0 | |||||||||
|
NeuroMorpho.Org species ontology old Resource Report Resource Website |
NeuroMorpho.Org species ontology old (RRID:SCR_010379) | NMOSP_1_6 | data or information resource, controlled vocabulary, ontology | Species taxonomy for the data curated in NeuroMorpho.Org. The existing ontologies are re-used as needed as the new metadata information for species and strains is deposited in NeuroMorpho.Org database. This species hierarchy consists of 56% of NCBI taxonomy and 39% of Rat strain ontology. The remaining 5% mostly consists of new concepts and few others from NIFSTD and MESH. | obo |
is listed by: BioPortal has parent organization: NeuroMorpho.Org |
nlx_157509 | SCR_010379 | 2025-05-15 10:39:39 | 0 | |||||||||
|
Protein-Protein Interaction Ontology Resource Report Resource Website |
Protein-Protein Interaction Ontology (RRID:SCR_010413) | PPIO | data or information resource, controlled vocabulary, ontology | A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. | obo |
is listed by: BioPortal has parent organization: HUPO Proteomics Standards Initiative |
nlx_157561 | SCR_010413 | 2025-05-15 10:39:40 | 0 | |||||||||
|
Proteomics Data and Process Provenance Ontology Resource Report Resource Website |
Proteomics Data and Process Provenance Ontology (RRID:SCR_010414) | PROPREO | data or information resource, controlled vocabulary, ontology | A comprehensive proteomics data and process provenance ontology. | owl | is listed by: BioPortal | nlx_157562 | SCR_010414 | 2025-05-15 10:39:40 | 0 | |||||||||
|
Provenance Ontology Resource Report Resource Website |
Provenance Ontology (RRID:SCR_010415) | PROVO | data or information resource, controlled vocabulary, ontology | Ontology that expresses the PROV Data Model using the OWL2 Web Ontology Language (OWL2) providing a set of classes, properties, and restrictions that can be used to represent and interchange provenance information generated in different systems and under different contexts. It can also be specialized to create new classes and properties to model provenance information for different applications and domains. | owl | is listed by: BioPortal | nlx_157563 | SCR_010415 | PROV-O | 2025-05-15 10:39:40 | 0 | ||||||||
|
Quantitative Imaging Biomarker Ontology Resource Report Resource Website |
Quantitative Imaging Biomarker Ontology (RRID:SCR_010417) | QIBO | data or information resource, controlled vocabulary, ontology | An ontology that describes various concepts in quantitative imaging biomarkers. | owl | is listed by: BioPortal | nlx_157565 | SCR_010417 | 2025-05-15 10:39:40 | 0 | |||||||||
|
Non-Randomized Controlled Trials Ontology Resource Report Resource Website |
Non-Randomized Controlled Trials Ontology (RRID:SCR_010380) | NONRCTO | data or information resource, controlled vocabulary, ontology | Ontology to help the systematic review and meta-analysis process of non randomized clinical trials. | owl | is listed by: BioPortal | nlx_157510 | SCR_010380 | 2025-05-15 10:39:39 | 0 | |||||||||
|
Nursing Care Coordination Ontology Resource Report Resource Website |
Nursing Care Coordination Ontology (RRID:SCR_010381) | NCCO | data or information resource, controlled vocabulary, ontology | Ontology that contains activities that nurses use while coordinating care among patients. | owl | is listed by: BioPortal | nlx_157511 | SCR_010381 | 2025-05-15 10:39:39 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
