Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
VocalMat Resource Report Resource Website 1+ mentions |
VocalMat (RRID:SCR_022342) | data processing software, software application, software resource, data analysis software | Software MATLAB based toolbox for automated quantitative analysis of ultrasonic vocalizations. Utilizes image processing libraries to detect USVs and computational vision and machine learning algorithms to classify detected USVs. Used for analysis of ultrasonic vocalizations from mice using computer vision and machine learning. | OpenBehavior, ultrasonic vocalizations, mice, behavioral data analysis | is listed by: OpenBehavior | DOI:10.7554/eLife.59161 | Free, Available for download, Freely available | https://github.com/ahof1704/VocalMat | SCR_022342 | 2026-08-04 09:44:59 | 1 | ||||||||
|
Permuco Resource Report Resource Website 1+ mentions |
Permuco (RRID:SCR_022341) | data processing software, software application, software resource, data analysis software | Software R package for permutation test in linear model with nuisances variables.Used for permutation testing in regression, ANOVA, and comparison of signals. | OpenBehavior, permutation testing in regression | is listed by: OpenBehavior | DOI:10.18637/jss.v099.i15 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/dabest-and-permuco/, https://github.com/jaromilfrossard/permuco | SCR_022341 | 2026-08-04 09:44:59 | 2 | ||||||||
|
DABEST Resource Report Resource Website 1+ mentions |
DABEST (RRID:SCR_022340) | data processing software, software application, software resource, data analysis software | Software package for data analysis using bootstrap coupled estimation. Library combining Python, R, and MATLAB for estimation statistics. | OpenBehavior, bootstrap coupled estimation, estimation statistics | is listed by: OpenBehavior | DOI:10.1038/s41592-019-0470-3 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/dabest-and-permuco/ | SCR_022340 | Data Analysis with Bootstrapped ESTimation | 2026-08-04 09:45:04 | 6 | |||||||
|
GazeMetrics Resource Report Resource Website |
GazeMetrics (RRID:SCR_022338) | data processing software, software application, software resource, data analysis software | Software tool for data extraction and computation of spatial accuracy and precision of head mounted display based eye trackers. Allows for significant customization without altering source code but changes to the code allow for further alteration. | OpenBehavior, eye tracking, behavioral measure, head mounted display based eye trackers, data samples extraction, accuracy and precision calculation |
is listed by: OpenBehavior has parent organization: University of Nevada at Reno; Nevada; USA |
DOI:10.1145/3379156.3391374 | Free, Available for download, Freely available | https://github.com/isayasMatter/GazeMetrics | SCR_022338 | 2026-08-04 09:44:59 | 0 | ||||||||
|
pyOS-5 project Resource Report Resource Website |
pyOS-5 project (RRID:SCR_022335) | instrument resource, portal, data or information resource, project portal | Open source operant box system optimized for use with tethered animals. System includes hardware and software. Control electronics are build on pyControl, controlling custom PCB integrating 5 infra-red break-beam sensors and 5 stimulus LEDs, single nose-poke for reward receptacle, stepper motor for control of custom peristaltic pump for reward delivery, audio board for tone generation through attached speaker, house light and fan, LED driver for optogenetic stimulation, and bidirectional communication with external devices via TTL pulses. | OpenBehavior, Instrument, operant box system, tethered animals, behavior apparatus, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 |
DOI:10.1038/s41598-021-01717-1 | Free, Freely available | SCR_022335 | Python based operant box system in 5-choice design, pyOS-5 | 2026-08-04 09:44:59 | 0 | ||||||||
|
pyPhotometry Resource Report Resource Website 1+ mentions |
pyPhotometry (RRID:SCR_022940) | instrument resource, portal, data or information resource, project portal | Open source Python based hardware and software for fiber photometry data acquisition. System includes compact, low cost, data acquisition board built around Micropython microcontroller, and cross platform graphical user interface for controlling acquisition and visualising signals. Can acquire two analog and two digital signals, and control two external LEDs via built in LED drivers. Time division multiplexed illumination allows independent readout of fluorescence evoked by different excitation wavelengths from single photoreceiver signal. | OpenBehavior, instrument, fiber photometry, Micropython microcontroller, analog control signals, data acquisition and analysis | is listed by: OpenBehavior | PMID:30837543 | Free, Available for download, Freely available | https://github.com/pyPhotometry | SCR_022940 | 2026-08-04 09:45:08 | 3 | ||||||||
|
LED Zappelin’ Resource Report Resource Website |
LED Zappelin’ (RRID:SCR_022560) | topical portal, portal, data or information resource | Open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2 photon imaging. Device that rapidly time interleaves stimulation and detection epochs during two photon imaging. | Instrument, OpenBehavior, LED controller, arbitrary spectrum visual stimulation, optogenetics, two photon imaging, stimulation and detection, behavioral neuroscience |
is listed by: OpenBehavior has parent organization: University of Sussex; Brighton; United Kingdom |
PMID:35498254 | Free, Freely available | https://edspace.american.edu/openbehavior/project/led-zappelin/ | SCR_022560 | 2026-08-04 09:45:03 | 0 | ||||||||
|
USVCAM Resource Report Resource Website |
USVCAM (RRID:SCR_022747) | instrument resource, portal, data or information resource, project portal | Open source acoustic camera system for measuring ultrasound communication in rodents. System includes small phased microphone array combined with camera and comprises USV segmentation algorithms with modification for overlapping vocalizations that results in high accuracy. Enables simpler and faster USV localization and assignment. | OpenBehavior, instrument, acoustic camera system, measuring ultrasound communication in rodents |
is listed by: OpenBehavior has parent organization: University of Toyama; Toyama; Japan |
PMID:35982786 | Free, Freely available | https://edspace.american.edu/openbehavior/?s=USVCAM | SCR_022747 | USVCAM project, ultrasonic vocalizations camera | 2026-08-04 09:45:06 | 0 | |||||||
|
Minian Resource Report Resource Website 1+ mentions |
Minian (RRID:SCR_022601) | data processing software, data analysis software, software resource, software application, software toolkit | Software miniscope analysis pipeline that requires low memory and computational demand so it can be run without specialized hardware. Offers interactive visualization that allows users to see how parameters in each step of pipeline affect output. | Miniscope, analysis pipeline, calcium imaging, mouse, Visualization, OpenBehavior |
is listed by: OpenBehavior has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NIMH DP2MH122399; NIMH R01MH120162; NIBIB R01EB028166; NSF 1926800; NSF 2046583; NINDS U01NS094286; NSF 1700408; NIA F32AG067640; NINDS R03 NS111493; NIDA R21 DA049568; NINDS R01 NS116357 |
PMID:35642786 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/minian/ | SCR_022601 | 2026-08-04 09:45:07 | 4 | |||||||
|
OpenSync Resource Report Resource Website |
OpenSync (RRID:SCR_022722) | data processing software, software application, software resource, data analysis software | Open source platform for synchronizing multiple behavioral and physiological signals in neuroscience experiments. | synchronizing multiple behavioral and physiological signals, behavioral and physiological measures, synchronizing signals, neuroscience experiments, OpenBehavior |
is listed by: OpenBehavior has parent organization: Texas A and M University; Texas; USA |
Free, Available for download, Freely available | https://github.com/moeinrazavi/OpenSync/wiki, https://edspace.american.edu/openbehavior/?s=OpenSync | SCR_022722 | 2026-08-04 09:45:05 | 0 | |||||||||
|
ACTman Resource Report Resource Website |
ACTman (RRID:SCR_023119) | software toolkit, software resource, software library | Software R library to automate labor intensive actigraphy data preprocessing and analyses steps while improving transparency, reproducibility, and scalability over software suites traditionally used in actigraphy research practice. Provides streamlined preprocessing while validating circadian rhythm and sleep analysis. | OpenBehavior, actigraphy data preprocessing, actigraphy data analyses, actigraphy, validating circadian rhythm and sleep analysis, | is listed by: OpenBehavior | European Research Council | DOI:S1440-2440(19)30287-7/fulltext | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=ACTman | SCR_023119 | Actigraphy Manager | 2026-08-04 09:45:10 | 0 | ||||||
|
Pynapple Resource Report Resource Website |
Pynapple (RRID:SCR_023312) | data processing software, data analysis software, standalone software, software resource, software application, software toolkit | Software object oriented, lightweight and standalone Python toolbox for neural data analysis. Its core features five versatile timeseries objects from Pandas library, allowing it the versatility to be used with most raw neuroscience data types and produce some common analysis forms. | OpenBehavior, neural data analysis, neuroscience data analysis, Pandas library objects, raw neuroscience data types, | is listed by: OpenBehavior | DOI:10.1101/2022.12.06.519376 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pynapple/ | SCR_023312 | 2026-08-04 09:45:14 | 0 | ||||||||
|
Live Mouse Tracker Toolkit Analysis Resource Report Resource Website |
Live Mouse Tracker Toolkit Analysis (RRID:SCR_024592) | LMT Toolkit | web application, software resource | Open source web application created to analyze Live Mouse Tracker data easily and intuitively. Used to check reliability and to make some analysis of data from Live Mouse Tracker experiments. LMT stores data in SQLite files that requires some computer skills, but LMT-toolkit makes it easy to compute and extract behavioral profiles for each animal tested following step-by-step process. | OpenBehavior, check LMT data reliability, analyze Live Mouse Tracker data, compute and extract behavioral profiles, |
is listed by: OpenBehavior is related to: Live Mouse Tracker analysis is related to: Live Mouse Tracker project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_024592 | , LMT Toolkit, lmt toolkit analysis, LMT toolkit analysis, LMT-toolkit, LMT-Toolkit Analysis, Live Mouse Tracker Toolkit | 2026-08-04 09:45:35 | 0 | |||||||
|
Laubach Lab GitHub Repository project Resource Report Resource Website |
Laubach Lab GitHub Repository project (RRID:SCR_021464) | instrument resource, portal, data or information resource, project portal | Portal related to control and decision making, focusing on role of prefrontal cortex. American University scientists through their GitHub repository provide 3D print files for many of behavioral devices used in their lab, including Nosepoke and Lickometer designed from rats. | Prefrontal cortex, behavioral devices, 3D print files collection, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: American University; Washington D.C.; USA |
Free, Freely available | SCR_021464 | Laubach Lab GitHub Repository | 2026-08-04 09:44:49 | 0 | |||||||||
|
Voluntary Access Static Incapacitance Chamber project Resource Report Resource Website 1+ mentions |
Voluntary Access Static Incapacitance Chamber project (RRID:SCR_021458) | VASIC | instrument resource, portal, data or information resource, project portal | Project related to assessment of pain in animal models.Provided system includes weight bearing device for high throughput and unbiased behavioral pain assessment in rodents.Includes custom printed circuit board, infrared sensor, Arduino microcontroller, 3D printed parts, and open source software for analysis. | Weight bearing, behavioral pain assessment, rodent pain assessment, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.ohx.2018.e00031 | Free, Freely available | SCR_021458 | Voluntary Access Static Incapacitance Chamber | 2026-08-04 09:44:49 | 1 | |||||||
|
ToxTrac Resource Report Resource Website 1+ mentions |
ToxTrac (RRID:SCR_021502) | data processing software, software application, image processing software, software resource | Software tool for tracking organisms. | Tracking organisms, tracking fish, tracking insects, tracking rodents, behavior measurement, freely moving, OpenBehavior |
is listed by: OpenBehavior is related to: ToxTrac project |
DOI:10.1111/2041-210x.12874 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/toxtrac/ | SCR_021502 | 2026-08-04 09:44:51 | 9 | ||||||||
|
ArduiPod Box project Resource Report Resource Website |
ArduiPod Box project (RRID:SCR_021466) | instrument resource, portal, data or information resource, project portal | Project related to presenting visual and auditory stimuli, recording behavior in form of nose pokes or screen touches, and delivering liquid rewards. ProvidesOperant chamber built with iPod Touch and Arduino microcontroller as main components. | Operant conditioning chamber, visual stimuli presentation, auditory stimuli presentation, record behavior, nose pokes, screen touches, deliver liquid reward, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:0.3758/s13428-013-0367-5 | Free, Freely available | SCR_021466 | ArduiPod Box | 2026-08-04 09:44:49 | 0 | ||||||||
|
3DTracker Resource Report Resource Website |
3DTracker (RRID:SCR_021506) | data processing software, software resource, reconstruction software, software application, image analysis software | Open source software tool for 3D-video based markerless computerized behavioral analysis for laboratory animals.Used to reconstruct full 3D images of animals and fit skeletal models to 3D image to estimate 3D pose of animals.Open-source 3D video based behavioral analysis system for neuroscience. | 3D video, computerized behavioral analysis, laboratory animals, reconstruct 3D image, animal image, 3D image, estimate animal 3D pose, behavior measurement, freely moving, head fixed, OpenBehavior |
is listed by: OpenBehavior is related to: 3DTracker project |
Free, Freely Available | https://edspace.american.edu/openbehavior/project/3dtracker/, http://www.3dtracker.org/ | SCR_021506 | 2026-08-04 09:44:50 | 0 | |||||||||
|
EthoScopes Resource Report Resource Website 1+ mentions |
EthoScopes (RRID:SCR_021507) | data processing software, software application, software resource, data analysis software | Software R package for data analysis.Enables high throughput analysis of behavior in Drosophila and other animals. | Data analysis, ethoscope platform, behavior analysis, Drosophila analysis, animals behavior analysis, OpenBehavior |
is listed by: OpenBehavior is related to: EthoScopes project |
DOI:10.1371/journal.pbio.2003026 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ethoscopes/ | SCR_021507 | Ethoscope | 2026-08-04 09:44:49 | 1 | |||||||
|
Joystick project Resource Report Resource Website |
Joystick project (RRID:SCR_021442) | instrument resource, portal, data or information resource, project portal | Project related to studying motor behavior and decision making in mice. Open source behavior training platform for studying motor control, decision making, and reaching reaction time. Enables behavioral work to study unexplored features of action selection, motivation, and value based decisions. | Motor control, decision making, reaction time, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1523/eneuro.0523-19.2020 | Free, Freely available | SCR_021442 | Joystick | 2026-08-04 09:44:49 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
