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https://www.foodrepo.org

Database of barcoded food products. Food Repo provides data that is on the package of each product, and collects its data via food distributors and volunteer contributors.

Proper citation: Food Repo (RRID:SCR_016097) Copy   

•   Source: SciCrunch Registry

http://teachingcommons.us/#annotations:TY4psokJEeaXOivKaAz4RA

A library of open source teaching and educational resources for professors and students. It includes resources such as textbooks, lesson plans, multimedia, and lectures from participating universities and institutions. Subject areas include the life sciences, the arts and humanities, law, social and behavioral sciences, medicine and health, engineering, education, the physical sciences, and mathematics. Users can share their own work and adopt others' on the platform.

Proper citation: Teaching Commons (RRID:SCR_014638) Copy   

•   Source: SciCrunch Registry

http://clonesearch.jdrfnpod.org/

Database of sequence data generated from high-throughput immunosequencing of the TCR beta chain (TRB) and B cell receptor (BCR) immunoglobulin heavy chain (IGH). This data comes from cells from NPOD donors.

Proper citation: nPOD TCR/BCR Search (RRID:SCR_015851) Copy   

•   Source: SciCrunch Registry

https://www.immunobase.org/about/

Web based resource focused on the genetics and genomics of immunologically related human diseases. Their mission is to provide a curated and integrated set of datasets and tools to support and promote research in this area. The current focus of the site is to integrate and curate summary case/control association statistics from the consortium of 12 diseases originally targeted by the ImmunoChip consortium.

Proper citation: ImmunoBase (RRID:SCR_014642) Copy   

•   Source: SciCrunch Registry

http://mona.fiehnlab.ucdavis.edu

Metadata-centric, auto-curating repository designed for storage and querying of mass spectral records. It contains metabolite mass spectra, metadata and associated compounds.

Proper citation: MassBank of North America (RRID:SCR_015536) Copy   

•   Source: SciCrunch Registry

http://metabolomics.pharm.uconn.edu/iimdb/

Database of known biochemical compounds collected from existing biochemical databases, as well as computationally generated human phase I and phase II metabolites of known compounds.

Proper citation: In vivo - In silico Metabolite Database (RRID:SCR_015537) Copy   

•   Source: SciCrunch Registry

https://www.clinicalgenome.org

Genomics knowledgebase for clinical relevance of genes and variants for use in research. ClinGen's primary function is to store and share information for the benefit of the scientific community. Laboratory scientists, clinicians, and patients can share and access data.

Proper citation: ClinGen (RRID:SCR_014968) Copy   

•   Source: SciCrunch Registry

http://rarediseases.org/for-patients-and-families/information-resources/rare-disease-information/

A database which provides brief introductions of rare diseases. New topics and diseases are added with the help of rare disease medical experts. This is mainly targeted at patients and their families but has useful information for professionals.

Proper citation: NORD Rare Disease Database (RRID:SCR_014573) Copy   

•   Source: SciCrunch Registry

http://krebs.iab.keio.ac.jp/HERMIT1/app/NichoAnu/

Metabolic pathway map that collects metabolic data gathered from multiple public databases and organizes them in one central location.

Proper citation: Ultimate Rough Aggregation of Metabolic Map (RRID:SCR_014694) Copy   

•   Source: SciCrunch Registry

https://senselab.med.yale.edu/MicroCircuitDB/

A database for storing and efficiently retrieving realistic computational models of brain microcircuits and networks. The focus is on microcircuits that are based on experimentally demonstrated properties of neurons and their connectivity.

Proper citation: MicrocircuitDB (RRID:SCR_014577) Copy   

•   Source: SciCrunch Registry

https://repod.pon.edu.pl/#annotations:cE6FdKHvEeaGt1e4NLwMyg

An online platform for open source data/datasets created, collected or annotated for scientific research of all fields and disciplines. Registered users can share data relating to their research project and view data from other projects. Groups can combine datasets into collections associated with the group, in contrast to individual members of the group hosting their own data.

Proper citation: RepOD (RRID:SCR_014697) Copy   

•   Source: SciCrunch Registry

https://astrocyte.rnaseq.sofroniewlab.neurobio.ucla.edu

Database containing information about RNA-sequencing and astrocyte reactivity. Searching a gene through this engine provides differential expression data for various experimental conditions.

Proper citation: Astrocyte Reactivity RNA-Seq Browser (RRID:SCR_015033) Copy   

•   Source: SciCrunch Registry

http://jcggdb.jp/rcmg/glycodb/Ms_ResultSearch

A multistage tandem mass spectral database using a variety of structurally defined glycans. It provides tools for glycomics research that enable users to identify glycans by spectral matching. The database stores MS2, MS3, and MS4 spectra of N-and O-linked glycans, and glycolipid glycans as well as the partial structures of these glycans.

Proper citation: Glycan Mass Spectral Database (GMDB) (RRID:SCR_014667) Copy   

•   Source: SciCrunch Registry

https://www.nist.gov/srd/nist-standard-reference-database-1a-v14

A library containing spectra upwards of 200,000 chemical compounds. Spectra include metabolites, peptides, contaminants, and lipids. All spectra and chemical structures are examined by professionals.

Proper citation: Mass Spectral Library (RRID:SCR_014668) Copy   

•   Source: SciCrunch Registry

http://amp.pharm.mssm.edu/datasets2tools/

Database for the discovery and evaluation of biomedical digital objects. It includes a wide variety of enrichment analyses, gene interaction networks, interactive data visualizations, datasets, and computational tools.

Proper citation: Datasets2Tools (RRID:SCR_016174) Copy   

•   Source: SciCrunch Registry

http://reefgenomics.org/

Database for marine genomics data. Users can access genomics datasets from various organisms as well as carry out BLAST and submit genomics information of their own. Data sets include coral, aiptasia, sponges, and sybiodinium.

Proper citation: Reefgenomics (RRID:SCR_015009) Copy   

•   Source: SciCrunch Registry

http://cts.fiehnlab.ucdavis.edu

A translation service which contains a registry of pubicly available chemical information such as structures, chemical names, chemical synonyms, database identifiers, molecular masses, XlogP and proton-donor/acceptor data for compound-specific, structure-based cross references. It offers single ID conversion, batch ID conversion, InChI code conversion, and other services.

Proper citation: Chemical Translation Service (RRID:SCR_014681) Copy   

•   Source: SciCrunch Registry

http://mamit-trna.u-strasbg.fr/Summary.asp

Compilation of mammalian mitochondrial tRNA genes. Sequences are classified into families according to the amino acid specificity of the different tRNAs as defined by the anticodon triplets. Each sequence is displayed linearly with color codes indicating secondary structural domains.

Proper citation: Mamit tRNA (RRID:SCR_015493) Copy   

•   Source: SciCrunch Registry

http://www.paradigmexperiments.com

Software application for millisecond accurate experimental control for cognitive neuroscience, psychology and linguistics research. Presents text, images, sounds, movies, self-paced reading trials and rating scales. An integrated Python scripting API is available. Joystick and microphone response are available. Supports button boxes from PST, Cedrus, fORP and custom built response boxes. Paradigm can detect fMRI triggers through serial and parallel ports. Includes sample experiments that implement many of the most popular experiment designs., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Paradigm (RRID:SCR_009634) Copy   

•   Source: SciCrunch Registry

http://www.fruitfly.org

Database on the sequence of the euchromatic genome of Drosophila melanogaster In addition to genomic sequencing, the BDGP is 1) producing gene disruptions using P element-mediated mutagenesis on a scale unprecedented in metazoans; 2) characterizing the sequence and expression of cDNAs; and 3) developing informatics tools that support the experimental process, identify features of DNA sequence, and allow us to present up-to-date information about the annotated sequence to the research community. Resources * Universal Proteomics Resource: Search for clones for expression and tissue culture * Materials: Request genomic or cDNA clones, library filters or fly stocks * Download Sequence data sets and annotations in fasta or xml format by http or ftp * Publications: Browse or download BDGP papers * Methods: BDGP laboratory protocols and vector maps * Analysis Tools: Search sequences for CRMs, promoters, splice sites, and gene predictions * Apollo: Genome annotation viewer and editor September 15, 2009 Illumina RNA-Seq data from 30 developmental time points of D. melanogaster has been submitted to the Short Read Archive at NCBI as part of the modENCODE project. The data set currently contains 2.2 billion single-end and paired reads and over 201 billion base pairs.

Proper citation: Berkeley Drosophila Genome Project (RRID:SCR_013094) Copy   

•   Source: SciCrunch Registry