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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Repository of biochemical, genetic, and structural information about DNA Polymerases. Polbase is designed to compile detailed results of polymerase experimentation, presenting them in a dynamic view to inform further research. After validation, results from references are displayed in context with relevant experimental details and are always traceable to their source publication. Polbase is connected to other resources, including PubMed, UniProt and the RCSB Protein Data Bank, to provide multi-faceted views of polymerase knowledge. In addition to a simple web interface, Polbase data is exposed for custom analysis by external software.
Proper citation: Polbase (RRID:SCR_006107) Copy
http://rucore.libraries.rutgers.edu/
Repository of digital research and educational materials created and used by the Rutgers University community and its strategic collaborators. The goal of the repository is to advance research and learning at Rutgers, to foster interdisciplinary collaboration, and to contribute to the development of new knowledge through the archiving, preservation, and presentation of digital resources. Original research products and papers of the faculty and administrators and the unique resources of the libraries will be permanently preserved and made accessible with tools developed to facilitate and encourage their continued use. RUcore''s developing collection includes * Primary source materials-manuscripts, photographs, maps, and multimedia, from the libraries'' special collections. * Resources about New Jersey, from the state''s libraries, museums, archives and historical societies from the New Jersey Digital Highway collection. * Electronic theses and dissertations, in collaboration with the Rutgers University graduate schools. * Faculty and Departmental publications: pre-prints, postprints, presentations, technical reports, etc.
Proper citation: RUcore (RRID:SCR_006382) Copy
Centralized, annotated repository for the Osteoarthritis Initiative (OAI) study, designed to accelerate research by organizing and linking extensive clinical, imaging (MRI/X-ray), and biomarker data. It aims to help researchers analyze knee osteoarthritis prevention, treatment, and progression.
Proper citation: OAI Knowledge base (RRID:SCR_028107) Copy
Tool for helping people identify and locate online repositories of research data. Users and bibliographers create and curate records that describe data repositories that users can search. * What repositories are appropriate for a researcher to submit his or her data to? * How do users find appropriate data repositories and discover datasets that meet their needs? * How can librarians help patrons locate and integrate data into their research or learning? Databib attempts to address these needs for the research community, including: * data users * data producers * publishers and professional societies * librarians * research funding agencies Are you familiar with a data repository that isn''t included in Databib? Please consider submitting a new record. You can suggest a repository for us to catalog by simply entering its title, URL, authority, and a subject for it... and we''ll do the rest!
Proper citation: Databib (RRID:SCR_005831) Copy
Dissemination of public datasets containing raw crystallography data (known as ''diffraction images''), along with rich metadata for search and persistent handles for citation in publications. Storage is federated, meaning the public index contains no data itself and merely points to data stored in external labs and institutions. TARDIS is scheduled to be replaced by the Bioscience Data Platform (https://www.nectar.org.au/bioscience-data-platform-tardis-cloud)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: TARDIS (RRID:SCR_006322) Copy
https://scicrunch.org/scicrunch/data/source/nlx_154697-3/search?q=*
A virtual database currently indexing available cell lines from: Coriell Cell Repositories, International Mouse Strain Resource (IMSR), ATCC, NIH Human Pluripotent Stem Cell Registry, NIGMS Human Genetic Cell Repository, and Developmental Therapeutics Program.
Proper citation: Integrated Cell Lines (RRID:SCR_008994) Copy
https://github.com/jmchandonia/CORAL
Software tool as framework for rigorous self validated data modeling and integrative, reproducible data analysis.
Proper citation: CORAL (RRID:SCR_022711) Copy
https://www.ruhr-uni-bochum.de/mpc/software/ProCon/index.html.en
Java based conversion tool for conversion of data from Proteomics files or a LIMS (Laboratory Information Management System) database into standard formats. Used to support wet-lab scientists in creating proteomics data files ready for upload into the public repositories.
Proper citation: ProCon - PROteomics CONversion (RRID:SCR_016363) Copy
Repository of gene phenotype associations for phenotypes derived from electronic health records, questionnaire data, and continuous traits computed on exomes released by UK Biobank. Repository was made available by AstraZeneca for public research.
Proper citation: AstraZeneca PheWAS Portal (RRID:SCR_021643) Copy
https://www.jax.org/research-and-faculty/resources/optogenetics-resource
Mouse lines expressing proteins that activate, inhibit or detect neuronal activity are available from The Jackson Laboratory Repository. Many of these strains have been generated by HHMI Janelia Farm GENIE Project or by Allen Institute for Brain Science.
Proper citation: Optogenetics Resource at JAX (RRID:SCR_017508) Copy
Software repository for R packages related to analysis and comprehension of high throughput genomic data. Uses separate set of commands for installation of packages. Software project based on R programming language that provides tools for analysis and comprehension of high throughput genomic data.
Proper citation: Bioconductor (RRID:SCR_006442) Copy
https://edspace.american.edu/openbehavior/project/worm-behavior-platform/
Project related to sharing worm tracking data and analysis routines.Open access repository for storing, accessing, filtering data and analysis.
Proper citation: Worm Behavior Platform project (RRID:SCR_021420) Copy
https://insectbraindb.org/app/
Database contains reference brain atlases for many insect species, neuron morphology when available, repository for published anatomical data, etc. Provides insect neuroanatomical and functional data.
Proper citation: Insect Brain Database (RRID:SCR_028617) Copy
Cloud-based executable research platform for discovering and running scientific code. Code Ocean is designed to give researchers and developers a way to share, discover and run code published in academic journals and conferences. Users can upload code and data in various programming languages and link working code in a computational environment with the associated article, with Code Ocean assigning a Digital Object Identifier (DOI) to the algorithm.
Proper citation: Code Ocean (RRID:SCR_015532) Copy
http://www.metabolomicsworkbench.org
Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops.
Proper citation: Metabolomics Workbench (RRID:SCR_013794) Copy
Distributed repository of anatomo-functional data and of simulation algorithms, fully integrated into a seamless simulation environment and directly accessible. This infrastructure will be used to create the physiome of the human musculo-skeletal system.
Proper citation: LHP LHDL (RRID:SCR_005928) Copy
https://www.accordionstudy.org/public/dspHome.cfm
A prospective, observational follow-up study of at least 8000 participants who were treated and followed in the Action to Control Cardiovascular Risk in Diabetes (ACCORD) Trial. Treatment in ACCORD ended in 2009 and ACCORDION is designed to further elucidate the long-term effects of the ACCORD treatment strategies and provide additional data on the relationships among various cardiovascular and diabetic risk factors.
Proper citation: Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION) (RRID:SCR_014373) Copy
https://edspace.american.edu/openbehavior/
Repository of open source tools for behavioral neuroscience research. OpenBehavior features hardware (tools, devices, apparatuses), as well as software for data acquisition and analysis and for the investigation of animal behavior and cognition. Dedicated to accelerating research through promotion of collaboration and open source projects.
Proper citation: OpenBehavior (RRID:SCR_015938) Copy
https://www.fludb.org/brc/home.spg?decorator=influenza
The Influenza Research Database (IRD) serves as a public repository and analysis platform for flu sequence, experiment, surveillance and related data.
Proper citation: Influenza Research Database (IRD) (RRID:SCR_006641) Copy
http://www.ncbi.nlm.nih.gov/genome/viruses/variation/
A repository which supports the search, retrieval, and display of large virus sequence data sets concerning the viruses of Dengue, West Nile, and Influenza. Users can search sequences based on a number of biological and clinical criteria and selected sequences can be downloaded or analyzed using a variety of web-based tools and displays. Virus Variation is an extension of NCBI's Influenza Virus Resource.
Proper citation: Virus Variation (RRID:SCR_013790) Copy
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