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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Roadmap Resource Report Resource Website 10+ mentions |
Roadmap (RRID:SCR_017207) | software application, software resource | Software tool to display surface of macromolecule and its properties. Uses projections to map van der Waals or solvent accessible surface of macromolecule onto plane., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Display, surface, macromolecule, property, projection, van der Waal | is related to: Purdue University; West Lafayette; Indiana | NSF ; NIH ; Medical Research Council |
PMID:8384042 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_017207 | 2026-08-04 09:44:08 | 14 | ||||||||
|
Conservation Resource Report Resource Website 1000+ mentions |
Conservation (RRID:SCR_016064) | software application, software resource, software toolkit | Software for scoring protein sequence conservation using the Jensen-Shannon divergence. It can be used to predict catalytic sites and residues near bound ligands. | scoring, protein, sequence, conservation, Jensen-Shannon, divergence, predict, catalytic, site, bound, ligands, clustal, fasta, concave | is related to: Princeton University; New Jersey; USA | NIH T32 HG003284; NSF IIS-0612231; NSF PECASE MCB-0093399; NIGMS GM076275; NIH P50 GM071508 |
PMID:17519246 | Free, Available for download | SCR_016064 | Conservation-code | 2026-08-04 09:43:47 | 1564 | |||||||
|
Mash Resource Report Resource Website 50+ mentions |
Mash (RRID:SCR_019135) | software application, software resource, data analytics software | Software tool for genome and metagenome distance estimation using MinHash. Reduces large sequences and sequence sets to small, representative sketches, from which global mutation distances can be rapidly estimated. | Genome distance estimation, metagenome distance estimation, MinHash, mutation distance, sequence, sequence set |
is listed by: Debian is listed by: OMICtools |
NHGRI ; NIH |
PMID:27323842 | Free, Available for download, Freely available | OMICS_10468 | https://mash.readthedocs.io/en/latest/, https://sources.debian.org/src/mash/ | SCR_019135 | 2026-08-04 09:44:32 | 54 | ||||||
|
New York University School of Medicine Langone Health Microscopy Laboratory Core Facility Resource Report Resource Website 100+ mentions |
New York University School of Medicine Langone Health Microscopy Laboratory Core Facility (RRID:SCR_017934) | access service resource, core facility, service resource | Core offers comprehensive light and electron microscopy technologies. Our scientists use light microscopes and electron microscopes at resolutions ranging from centimeters to angstroms, providing clear and detailed images.We assist at every stage of your experiment, offering research-design consultation and instrument training, as well as guidance in study execution, analysis, and presentation for publication. | Microscopy, light, electron, image, training, experiment, consultation, analysis, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: New York University School of Medicine; New York; USA |
NCI CA016087; NCRR RR023704; NCRR RR024708; NIH Office of the Director OD019974; NIH A1080192 |
Open | ABRF_366 | https://coremarketplace.org/?FacilityID=366 | SCR_017934 | NYU Langone Microscopy Laboratory | 2026-08-04 09:44:19 | 125 | ||||||
|
University of Michigan Medical School Bioinformatics Core Resource Report Resource Website 10+ mentions |
University of Michigan Medical School Bioinformatics Core (RRID:SCR_019168) | access service resource, core facility, service resource | Core helps researchers identify and interpret patterns in RNA and DNA by placing sequencing data into biologically meaningful context. Services include experimental design, developing reproducible workflows, analyzing next-generation sequencing data, and supporting manuscript development/publication. | USEDit, identify and interpret patterns, RNA, DNA, sequencing data, analyzing NGS data, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Michigan Medical School; Michigan; USA |
NIH | ABRF_522 | https://coremarketplace.org/?FacilityID=522 | SCR_019168 | Bioinformatics Core, UMMS Bioinformatics Core | 2026-08-04 09:44:33 | 21 | |||||||
|
Cornell University BRC Epigenomics Core Facility Resource Report Resource Website 10+ mentions |
Cornell University BRC Epigenomics Core Facility (RRID:SCR_021287) | access service resource, core facility, service resource | Provides service that maps protein DNA interactions genome wide, tracks experimental metadata, and implements quality controlled data processing and research based analysis pipelines. Provides epigenomic and bioinformatic research resources and services that include sample preparation services and data generation. Open source platforms enable and reinforce FAIR data practices. Core is able to receive and process cell and tissue samples for various diagnostic epigenetic assays. | USEDit, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: Cornell University; New York; USA |
NIH ; NSF |
ABRF_1185 | https://coremarketplace.org/?FacilityID=1185 | SCR_021287 | CU Epigenomics Core Facility, Cornell University Epigenomics Core Facility | 2026-08-04 09:44:46 | 11 | |||||||
|
Cytokine Registry Resource Report Resource Website 1+ mentions |
Cytokine Registry (RRID:SCR_014368) | database, data or information resource | A registry of cytokines, chemokines, and receptors generated for the purpose of collecting, integrating, and mapping between entity names and synonyms from several resources. These resources include MeSH, the Protein Ontology, EntrezGene, HGNC, MGI, UniProt and others. | cytokine, registry, innate immune system, chemokine, receptor |
uses: UniProt uses: MeSH uses: Plant Ontology uses: Mouse Genome Informatics (MGI) uses: HGNC uses: Entrez Gene is affiliated with: The Immunology Database and Analysis Portal (ImmPort) has parent organization: University of California at San Francisco; California; USA |
NIAID ; NIH ; Department of Health and Human Services |
Acknowledgement required, Registry file is available for download | SCR_014368 | ImmPort Cytokine Registry | 2026-08-04 09:43:24 | 1 | ||||||||
|
ChemokineDB Resource Report Resource Website |
ChemokineDB (RRID:SCR_016593) | database, data or information resource | Resource of chemokines and receptors with detailed information including taxonomy, nomenclature, structure, physiological function, tissue information, and phenotype, collected from IUPHAR/BPS, UniGene, and UniProt public databases. | data, chemokine, receptor, taxonomy, nomenclature, structure, physiological, function, phenotype, collection | is listed by: NIAID | NIH | Free, Freely available | SCR_016593 | 2026-08-04 09:43:57 | 0 | |||||||||
|
Molecular Signatures Database Resource Report Resource Website 500+ mentions |
Molecular Signatures Database (RRID:SCR_016863) | MSigDB | database, data or information resource | Collection of annotated gene sets for use with Gene Set Enrichment Analysis (GSEA) software. | collection, annotated, gene, set, GSEA, enrichment, analysis, genome, RNA, expression, data, FASEB list, DRKB |
uses: GSEA uses: Gene Set Enrichment Analysis has parent organization: Broad Institute |
NIH ; NIGMS ; NCI CA295532 |
Free, Freely available, Registration required to download GSEA software | https://www.gsea-msigdb.org/gsea/msigdb/ | SCR_016863 | Molecular Signatures Database, The Molecular Signatures Database, MSigDB, MSigDB database v6.2 | 2026-08-04 09:44:00 | 762 | ||||||
|
vhlab-microscopyimageanalysis-matlab Resource Report Resource Website 1+ mentions |
vhlab-microscopyimageanalysis-matlab (RRID:SCR_024450) | software application, software resource, source code | Software Matlab app for analysis of high density imaging data like that from Array Tomography. | Matlab, array tomography, super-resolution imaging, high density imaging data, high density imaging data analysis, | NIH | Free, Available for download, Freely available | SCR_024450 | 2026-08-04 09:45:32 | 1 | ||||||||||
|
Midas Platform Resource Report Resource Website 10+ mentions |
Midas Platform (RRID:SCR_002186) | Midas | data management software, software application, software resource, software toolkit | Open-source toolkit that enables the rapid creation of tailored, web-enabled data storage and provides a cohesive system for data management, visualization, and processing. At its core, Midas Platform is implemented as a PHP modular framework with a backend database (PostGreSQL, MySQL and non-relational databases). While the Midas Platform system can be installed and deployed without any customization, the framework has been designed with customization in mind. As building one system to fit all is not optimal, the framework has been extended to support plugins and layouts. Through integration with a range of other open-source toolkits, applications, or internal proprietary workflows, Midas Platform offers a solid foundation to meet the needs of data-centric computing. Midas Platform provides a variety of data access methods, including web, file system and DICOM server interfaces, and facilitates extending the methods in which data is stored to other relational and non-relational databases. | data storage, data analysis, visualization, multimedia, digital archiving, processing | has parent organization: Kitware | NLM ; NIH ; NCI |
PMID:18560078 | Apache License, v2, Simplified BSD License, BSD License | nlx_154696 | SCR_002186 | Midas Platform - The Multimedia Digital Archiving System | 2026-08-04 09:40:35 | 42 | |||||
|
LONI MiND Resource Report Resource Website |
LONI MiND (RRID:SCR_004820) | MiND | software resource, service resource | The MiND: Metadata in NIfTI for DWI framework enables data sharing and software interoperability for diffusion-weighted MRI. This site provides specification details, tools, and examples of the MiND mechanism for representing important metadata for DWI data sets at various stages of post-processing. MiND framework provides a practical solution to the problem of interoperability between DWI analysis tools, and it effectively expands the analysis options available to end users. To assist both users and developers in working with MiND-formatted files, we provide a number of software tools for download. * MiNDHeader A utility for inspecting MiND-extended files. * I/O Libraries Programming libraries to simplify writing and parsing MiND-formatted data. * Sample Files Example files for each MiND schema. * DIRAC LONI''s Diffusion Imaging Reconstruction and Analysis Collection is a DWI processing suite which utilizes the MiND framework. | diffusion magnetic resonance imaging, metadata, dwi, dti, software interoperability, data sharing | has parent organization: David Geffen School of Medicine at UCLA; California; USA | NIH ; NCRR ; NIMH ; NCRR 1U54RR021813-01; NIGMS 5T32GM008042-25; NCRR P41 RR013642; NIMH R01 MH71940; NIBIB EB008432; NIBIB EB008281; NIBIB EB007813; NICHD HD050735 |
PMID:20206274 | nlx_143920 | http://mind.loni.ucla.edu/ | SCR_004820 | MiND: Metadata in NIfTI for DWI, Metadata in NIfTI for DWI | 2026-08-04 09:41:13 | 0 | |||||
|
Calculator for Association with Two Stage design Resource Report Resource Website 100+ mentions |
Calculator for Association with Two Stage design (RRID:SCR_007238) | CaTS | software application, software resource | Software tool for carrying out power calculations for large genetic association studies, including two stage genome wide association studies. | Calculator, genetic association, genetic association studies, two stage genome wide association studies, | has parent organization: University of Michigan; Ann Arbor; USA | NIH | Free, Freely available | nlx_154258, SCR_009139, nif-0000-30278 | SCR_007238 | CATS, power Calculator for Association with Two Stage design | 2026-08-04 09:41:48 | 308 | ||||||
|
OrbitProject Resource Report Resource Website |
OrbitProject (RRID:SCR_010463) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 29, 2014. The orbit project was a registry of biomedical resources. | has parent organization: National Library of Medicine | NIH | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157692 | SCR_010463 | 2026-08-04 09:42:41 | 0 | |||||||||
|
CARDS Database Resource Report Resource Website 1+ mentions |
CARDS Database (RRID:SCR_009011) | CARDS, CARDS Database | database, data or information resource | Database of federally funded research projects pertaining to dietary supplements. CARDS contains projects funded by the United States Department of Agriculture (USDA), the Department of Defense (DOD) and the Institutes and Centers (ICs) of the National Institutes of Health (NIH) beginning with fiscal year 1999, the first year that NIH ICs began reporting research related to dietary supplements. Projects funded by other Federal agencies will be added to CARDS as they become available. The Office of Dietary Supplements (ODS) will post notices on its website and listserv when CARDS updates are completed. Codes assigned to each research project allow the CARDS user to identify: * research related to specific dietary supplement ingredients; for example, vitamin E or St. John''''s wort * the type of study; for example, a Phase III study or an animal study * health outcomes or biological effects; for example, osteoporosis or antioxidant function * whether the research is directly related or indirectly related to dietary supplements. For example, a clinical trial comparing bone density in women given a daily calcium supplement versus a placebo would be classified as directly related to dietary supplements. A study examining the activation of steroid hormone receptors by supplemental vitamin D in cell culture would be classified as indirectly related to dietary supplements because the direct physiological or health effects of vitamin D supplementation are not being studied. A search of the CARDS database can be used to sort and tabulate information for a variety of purposes. For example, a researcher may want to know which ICs at the NIH fund research on herbal supplement ingredients. A consumer may want to know if the Federal government is supporting research on a popular dietary supplement ingredient such as vitamin C. | dietary supplement |
is related to: Human Nutrition Research Information Management is related to: NIDDK Information Network (dkNET) has parent organization: National Institutes of Health |
NIH | nlx_152703 | SCR_009011 | Computer Access to Research on Dietary Supplements Database, Computer Access to Research on Dietary Supplements | 2026-08-04 09:42:17 | 1 | |||||||
|
University of Michigan Statistics Online Computational Resource Core Facility Resource Report Resource Website |
University of Michigan Statistics Online Computational Resource Core Facility (RRID:SCR_022917) | SOCR | access service resource, core facility, service resource | SOCR designs, validates and freely disseminates knowledge. The Resource develops AI/ML tools, mathematical models, and end-to-end data analytic protocols for biomedical and health studies. It provides portable online aids for probability, statistics and health science education, promotes technology enhanced instruction, supports efficient statistical computing, supports AI-services, and advances predictive big data analytics. The SOCR platform includes repository of interactive apps, datasets and case-studies, computational tools, visualization approaches, instructional resources, learning materials, and curricular components. SOCR faculty, staff, and students support data and information science collaborations and analytic partnerships involving biomedical, healthcare, and biostatistical investigations. | ABRF, probability, statistics and health science education, statistical computing, predictive big data analytics |
is listed by: ABRF CoreMarketplace has parent organization: University of Michigan; Ann Arbor; USA |
NSF ; NIH |
ABRF_1602 | https://coremarketplace.org/?FacilityID=1602&citation=1 | SCR_022917 | Statistics Online Computational Resource (SOCR), University of Michigan Ann Arbor Statistics Online Computational Resource (SOCR) | 2026-08-04 09:45:08 | 0 | ||||||
|
Emory University Robert P. Apkarian Integrated Electron Microscopy Core Facility Resource Report Resource Website 10+ mentions |
Emory University Robert P. Apkarian Integrated Electron Microscopy Core Facility (RRID:SCR_023537) | IEMC | access service resource, core facility, service resource | Core helps investigators use the latest technologies on structural research in their projects. Provides expertise in experimental needs. | USEDit, ABRF, electron microscopy, |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Emory University; Georgia; USA |
NIH ; NSF ; Georgia Clinical and Translational Science Alliance ; Emory University School of Medicine |
ABRF_1753 | https://coremarketplace.org/?FacilityID=1753&citation=1 | SCR_023537 | Robert P. Apkarian Integrated Electron Microscopy Core (IEMC), Emory University Robert P. Apkarian Integrated Electron Microscopy Core (IEMC) | 2026-08-04 09:45:17 | 19 | ||||||
|
PharmKGB Resource Report Resource Website 100+ mentions |
PharmKGB (RRID:SCR_025580) | knowledge base, data or information resource | NIH-funded resource that provides information about how human genetic variation affects response to medications. PharmGKB collects, curates and disseminates knowledge about clinically actionable gene-drug associations and genotype-phenotype relationships. | human genetic variation affects, response to medications, clinically actionable gene-drug associations, genotype-phenotype relationships, | NIH | Free, Freely available, | SCR_025580 | Pharmacogenomics Knowledgebase | 2026-08-04 09:45:51 | 104 | |||||||||
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NIH PRECISION Human Pain Network Resource Report Resource Website 10+ mentions |
NIH PRECISION Human Pain Network (RRID:SCR_025458) | topical portal, portal, disease-related portal, data or information resource | Project titled Program to Reveal and Evaluate Cells-to-gene Information that Specify Intricacies, Origins, and Nature of Human Pain (PRECISION) Network to develop meaningful resource for knowledge transfer, and to integrate and share Human Pain Associated Genes and Cell Datasets. Building knowledge platform to visualize, query, and interact with these data will support researchers and help accelerate dissemination of vital data to the larger scientific community. These goals align with NIH Helping to End Addiction Long-term (HEAL) Initiative, which seeks to accelerate the discovery and successful translation of non-addictive pain therapeutics. PRECISION Human Pain Network will leverage prior interdisciplinary collaboration to create workflows, tools, and infrastructure to define data and metadata types, to improve data management and sharing, and to integrate datasets and visualization tools. | Human pain network, human pain associated genes and cell datasets, knowledge platform, HEAL, integrated data, |
is related to: SPARC Portal is related to: Harmonized DRG and TG Reference Atlas |
NIH | Free, Freely available | SCR_025458 | PRECISION Pain Network | 2026-08-04 09:45:46 | 13 | ||||||||
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University of Oklahoma Biomolecular Structure Core Facility Resource Report Resource Website |
University of Oklahoma Biomolecular Structure Core Facility (RRID:SCR_028074) | access service resource, core facility, service resource | Offers access to instrumentation, training and services for structure determination of macromolecular molecules using single crystal X-ray diffraction and/or cryo-EM Single Particle Analysis (SPA). Instrumentation is available for initial crystallization trials, optimization of crystallization, single crystal X-ray diffraction and data collection at synchrotron radiation facilities, as well as electron microscopy grid preparation for cryo-EM (SPA), screening and data collection using a Thermo Scientific Tundra Cryo-TEM and assistance for data collection at national laboratories. | ABRF, structure determination, macromolecular molecules, single crystal X-ray diffraction, cryo-EM Single Particle Analysis, |
is listed by: ABRF CoreMarketplace has parent organization: University of Oklahoma; Oklahoma; USA |
NIH P20GM103640; NIH P30GM145423; NSF 0922269 |
ABRF_5821 | https://coremarketplace.org/RRID:SCR_028074/?citation=1 | SCR_028074 | 2026-08-04 09:46:21 | 0 |
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