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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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C-GORD Resource Report Resource Website 1+ mentions |
C-GORD (RRID:SCR_021866) | database, data or information resource | Center maintains database containing all phenotypical data collected by Research Projects and Ancillary collaborators, as well as RNAseq and genotype data.Provides access to data generated by NIDA center for genetic studies of drug abuse in outbred rats and additional research projects that use N/NIH heterogeneous stock (HS) outbred rats and Center’s core services that support genotyping and analysis.Alignes data generated in HS rats with FAIR (Findable, Accessible, Interoperative, Reusable) data management principles.Provides structured access to data associated with research papers produced by research projects that use HS rats. | genetic studies, drug abuse, outbred rats, genotyping and analysis, HS rats, FAIR data, drug addiction behaviors data, multiple behavior phenotypes |
is related to: RatGTEx Portal has parent organization: University of California at San Diego; California; USA |
Restricted | http://cgord.org, https://github.com/Palmer-Lab-UCSD | SCR_021866 | CGORD, Center for GWAS in Outbred Rats Database | 2026-08-08 12:04:42 | 1 | ||||||||
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Allelic Dosage corrected Allele Specific human Transcription factor binding sites Resource Report Resource Website 1+ mentions |
Allelic Dosage corrected Allele Specific human Transcription factor binding sites (RRID:SCR_021863) | ADASTRA | database, data or information resource | Landscape of allele specific transcription factor binding in human genome. Creators conducted meta analysis of ChIP-Seq experiments and assembled database of allele specific binding events listing more than half million entries at nearly 270 thousand single nucleotide polymorphisms for several hundred human transcription factors and cell types. | Allele specific transcription factor binding, human genome, nucleotide polymorphisms, human transcription factors | DOI:10.1038/s41467-021-23007-0 | Free, Freely available | SCR_021863 | 2026-08-08 12:04:35 | 5 | |||||||||
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MongoDB Resource Report Resource Website 50+ mentions |
MongoDB (RRID:SCR_021224) | database, data or information resource | General purpose, document based, distributed database built for modern application developers and for the cloud. Offers Community and Enterprise version of database.MongoDB Community is source available and free to use edition of MongoDB. MongoDB Enterprise is available as part of MongoDB Enterprise Advanced subscription and includes comprehensive support for your MongoDB deployment. MongoDB Enterprise also adds enterprise-focused features such as LDAP and Kerberos support, on-disk encryption, and auditing.MongoDB also offers Atlas,hosted MongoDB Enterprise service option in cloud which requires no installation overhead and offers free tier to get started. | General purpose database, document based database, distributed database | is related to: encrypted-mongodb | Restricted | SCR_021224 | MongoDB 4.4 | 2026-08-08 12:04:42 | 86 | |||||||||
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Transcriptional Regulatory Relationships Unrevealed by Sentence based Text mining database Resource Report Resource Website 100+ mentions |
Transcriptional Regulatory Relationships Unrevealed by Sentence based Text mining database (RRID:SCR_022554) | TRRUST | database, data or information resource | TRUSST is reference database of human transcriptional regulatory interactions.TRRUST v2 is manually curated expanded reference database of human and mouse transcriptional regulatory interactions. | human and mouse transcriptional regulatory interactions, regulatory networks, transcriptional regulatory networks, human, mouse | National Research Foundation of Korea ; Brain Korea 21 PLUS program |
PMID:26066708 DOI:10.1093/nar/gkx1013 |
Restricted | https://www.grnpedia.org/trrust/v1/ | SCR_022554 | TRRUST database, TRRUSTv2 | 2026-08-08 12:04:35 | 269 | ||||||
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TTRUST Resource Report Resource Website 1+ mentions |
TTRUST (RRID:SCR_022490) | database, data or information resource | Reference database of human transcriptional regulatory interactions. Manually curated database of human and mouse transcriptional regulatory networks. | manually curated database, human transcriptional regulatory network, mouse transcriptional regulatory networks, transcriptional regulatory networks | National Research Foundation of Korea | PMID:26066708 PMID:29087512 |
Free, Freely available | https://www.grnpedia.org/trrust/v1/ | SCR_022490 | Transcriptional Regulatory Relationships Unraveled by Sentence based Text mining | 2026-08-08 12:04:43 | 7 | |||||||
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NeuroPep Resource Report Resource Website 10+ mentions |
NeuroPep (RRID:SCR_023102) | database, data or information resource | Comprehensive resource of neuropeptides, which holds non-redundant neuropeptide entries. Data collected from resources including MEDLINE abstracts, full papers, UniProt,database at www.neuropeptides.nl and Neuropedia. Contains detailed annotations for each entry, including source organisms, tissue specificity, families, names, post-translational modifications, 3D structures and literature references. Amino acid compositions, isoelectric points, molecular weight and other physicochemical properties of peptides are also provided. Search database with keywords such as sequence, name, family, etc.,User friendly web tools like browsing, sequence alignment and mapping are also integrated.Users can submit new entries online. Each new entry is validated before incorporating it. | neuropeptide database, neuropeptide, non-redundant neuropeptide, | National Natural Science Foundation of China ; Fundamental Research Funds for the Central Universities of China |
PMID:25931458 | Free, Freely available | SCR_023102 | 2026-08-08 12:04:43 | 10 | |||||||||
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TimeTree Resource Report Resource Website 1000+ mentions |
TimeTree (RRID:SCR_021162) | database, data or information resource | Public knowledge base for information on evolutionary timescale of life. Data from thousands of published studies are assembled into searchable tree of life scaled to time. | Evolutionary timescale of life, published studies data, , FASEB list | Free, Freely available | SCR_021162 | 2026-08-08 12:04:35 | 1496 | |||||||||||
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Structural Antibody Database Resource Report Resource Website 10+ mentions |
Structural Antibody Database (RRID:SCR_022096) | SAbDab | database, data or information resource | Database containing all antibody structures available in the PDB, annotated and presented in consistent fashion.Each structure is annotated with number of properties including experimental details, antibody nomenclature (e.g. heavy-light pairings), curated affinity data and sequence annotations. You can use the database to inspect individual structures, create and download datasets for analysis, search the database for structures with similar sequences to your query, monitor the known structural repetoire of antibodies. | antibody structure, annotated structure, Protein Data Bank |
uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: Therapeutic Structural Antibody Database is related to: Worldwide Protein Data Bank (wwPDB) |
Engineering and Physical Sciences Research Council ; UCB Pharma ; Roche GmbH |
DOI:10.1093/nar/gkt1043 | Free, Freely available | SCR_022096 | 2026-08-08 12:04:43 | 40 | |||||||
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CMH Variant Warehouse Resource Report Resource Website |
CMH Variant Warehouse (RRID:SCR_021839) | database, data or information resource | Database of non identifiable, summary data on all variants identified in Childrens Mercy Genomic Medicine Center, including project data of Genomic Answers for Kids. Database can be searched and viewed with genomic annotations, population database cross references such as ClinVar, gnomAD and dbSNP, ACMG curations and local allele frequency. Variant data are available for bulk download as annotated VCF. | Variant data, Childrens Mercy Genomic Medicine Center Kansas City, pediatric sequencing, genome driven applications | Free, Freely available | SCR_021839 | Childrens Mercy Variant Warehouse Database | 2026-08-08 12:04:42 | 0 | ||||||||||
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ClinWiki Resource Report Resource Website 1+ mentions |
ClinWiki (RRID:SCR_021297) | database, data or information resource | Clinical trials database. | Clinical trials, data, Wikidata | is related to: Wikidata | William Hoos | Free, Freely available | Wikidata_Q96777166 | https://www.wikidata.org/wiki/Q96777166 | SCR_021297 | 2026-08-08 12:04:35 | 1 | |||||||
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Repbase Resource Report Resource Website 500+ mentions |
Repbase (RRID:SCR_021169) | database, data or information resource | Database of repetitive DNA elements.Database of prototypic sequences representing repetitive DNA from different eukaryotic species. Used in genome sequencing projects worldwide as reference collection for masking and annotation of repetitive DNA. | repetitive DNA elements, prototypic sequences, eukaryotic species, repetitive DNA masking, repetitive DNA annotation, reference collection, FASEB list | is used by: RepeatMasker | SCR_021169 | 2026-08-08 12:04:35 | 942 | |||||||||||
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Polygenic Score Catalog Resource Report Resource Website 100+ mentions |
Polygenic Score Catalog (RRID:SCR_023558) | database, data or information resource | Open database of polygenic scores and relevant metadata required for accurate application and evaluation. Used for reproducibility and systematic evaluation. | polygenic scores and relevant metadata, reproducibility and systematic evaluation, | UK Medical Research Council ; British Heart Foundation ; National Institute for Health Research ; Health Data Research UK ; Munz Chair of Cardiovascular Prediction and Prevention ; NHGRI U41HG007823; European Molecular Biology Laboratory ; Canadian Institutes of Health Research postdoctoral fellowship |
PMID:33692568 | Free, Freely available, | SCR_023558 | The Polygenic Score (PGS) Catalog | 2026-08-08 12:04:36 | 139 | ||||||||
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AllFam Resource Report Resource Website 1+ mentions |
AllFam (RRID:SCR_021276) | database, data or information resource | Database for classifying allergenic proteins into protein families.You can browse lists of allergen families restricted by allergen source (plants, animals, fungi, bacteria) and route of exposure (inhalation, ingestion etc.) or search for specific allergens, sources or protein families. Every allergen family entry is linked to description of biochemical properties and allergological significance of family members as well as list of key references related to this family. | Allergen families, allergenic proteins, protein families, allergen source | Free, Freely available | SCR_021276 | AllFam database of allergen families | 2026-08-08 12:04:43 | 4 | ||||||||||
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trinetx Resource Report Resource Website 100+ mentions |
trinetx (RRID:SCR_022760) | database, data or information resource | Network of healthcare organizations, together with data partners in Brazil, South Korea, and Japan, to bring clinical facts on more than 250 million patients around the world. Federated model so users of this data are ensured new patients, observations, and results every day, all harmonized to standard terminology like ICD-10 and LOINC without any data wrangling required at the point of care. The raw data is not available to authors of papers and papers in medicine are being retracted. | Data, medical data, clinical facts, patients around the world, raw data is not available to authors, papers in medicine are being retracted | Restricted | SCR_022760 | 2026-08-08 12:04:43 | 295 | |||||||||||
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OncoboxPD Resource Report Resource Website 1+ mentions |
OncoboxPD (RRID:SCR_023723) | database, data or information resource | Structured curated collection of protein based and of metabolic human molecular pathways. Human molecular pathways database with tools for activity calculating and visualization.All pathways are functionally classified according to GO terms enrichment patterns. All pathway participants, their interactions and reactions are uniformly processed and annotated, and are ready for numeric analysis of experimental expression data.For every comparison graph is generated summarizing top up and down regulated pathways. | Gene Ontology terms enrichment patterns, human molecular pathways, curated collection, GO terms enrichment patterns, experimental expression data analysis, |
is related to: oncoboxlib is related to: Gene Ontology |
Russian Science Foundation ; National Natural Science Foundation of China ; Qingdao Key Research Project ; Qingdao Key Health Discipline Development Fund |
PMID:35615022 | Free, Freely available | SCR_023723 | Oncobox Pathway Databank | 2026-08-08 12:04:45 | 8 | |||||||
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VDJbase Resource Report Resource Website 10+ mentions |
VDJbase (RRID:SCR_022599) | database, data or information resource | Open source adaptive immune receptor genotype and haplotype database. Core collection is inferred from immune receptor repertoire sequences and genomically derived material. Provides customisable reports, which allow users to study gene and allele usage in various ways. | Adaptive immune receptor genes, genotypes and haplotypes, immune receptor repertoire sequences, customisable reports, gene and allele | European Union ; NIAID R01AI127877; NIAID R01AI125567; NIAID R01AI130398 |
DOI:10.1093/nar/gkz872 | Free, Freely available | SCR_022599 | 2026-08-08 12:04:35 | 11 | |||||||||
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BnTIR Resource Report Resource Website 10+ mentions |
BnTIR (RRID:SCR_023021) | database, data or information resource | Searchable database of Brassiceae genomic data hosted on the website. | Brassica napus, transcriptome information, Brassiceae genomic data | National Key Research and Development Plan of China | Free, Freely available | SCR_023021 | Brassica napus Transcriptome Information Resource | 2026-08-08 12:04:45 | 23 | |||||||||
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Kinase Associated Neural Phospho Signaling Resource Report Resource Website 1+ mentions |
Kinase Associated Neural Phospho Signaling (RRID:SCR_023659) | KANPHOS | database, data or information resource | Database system that provides phosphorylated sites and information about which substrates are phosphorylated by specific kinase and which extracellular stimuli activate or inhibit protein phosphorylation via intracellular signaling cascades. | Fujita Health University, Toyoake, Japan, phosphorylated sites, substrates, phosphorylation, kinase, protein phosphorylation, intracellular signaling cascades, |
works with: Allen Brain Atlas works with: HuGE Navigator - Human Genome Epidemiology Navigator works with: UniProtKB |
Free, Freely available | SCR_023659 | 2026-08-08 12:04:36 | 1 | |||||||||
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Brassicaceae Database Resource Report Resource Website 100+ mentions |
Brassicaceae Database (RRID:SCR_023019) | BRAD | database, data or information resource | Database includes newly released genome sequences of Brassiceae species and published genomic data of most other Brassicaceae species.Data can be browsed in JBrowse or searched in BLAST. Offers service of searching for syntenic genes, which are generated based on their syntenic relationships to genes in Arabidopsis thaliana. Regularly updated with newly released reference genomes. | genome sequences, Brassiceae species, published genomic data, syntenic genes, | National Programon Key Research Project ; National Natural Science Foundation of China |
DOI:10.1093/nar/gkab1057 | Free, Freely available | SCR_023019 | 2026-08-08 12:04:36 | 400 | ||||||||
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ATCC STR database Resource Report Resource Website 1+ mentions |
ATCC STR database (RRID:SCR_019203) | database, data or information resource | Comprehensive database of Short Tandem Repeat DNA profiles for all of ATCC human cell lines. ATCC data collection as part of continuing efforts to characterize and authenticate cell lines in Cell Biology collection. | Short tandem repeat, DNA profile, ATCC human cell line, ATCC data collection | is related to: ATCC | Restricted | SCR_019203 | STR database, Short Tandem Repeat database | 2026-08-08 12:04:42 | 5 |
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