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http://lucene1.neuinfo.org/nif_resource/monthly_results/current/
An automatic pipeline based on an algorithm that identifies new resources in publications every month to assist the efficiency of NIF curators. The pipeline is also able to find the last time the resource's webpage was updated and whether the URL is still valid. This can assist the curator in knowing which resources need attention. Additionally, the pipeline identifies publications that reference existing NIF Registry resources as this is also of interest. These mentions are available through the Data Federation version of the NIF Registry, http://neuinfo.org/nif/nifgwt.html?query=nlx_144509 The RDF is based on an algorithm on how related it is to neuroscience. (hits of neuroscience related terms). Each potential resource gets assigned a score (based on how related it is to neuroscience) and the resources are then ranked and a list is generated.
Proper citation: NIF Registry Automated Crawl Data (RRID:SCR_012862) Copy
http://www.brimr.org/NIH_Awards/2010/NIH_Awards_2010.htm
Excel files available for download of ranking tables of NIH Funding to US Medical Schools in 2010, school and Principal Investigator (PI) rankings by Medical School Department, direct plus indirect costs (excluding both R & D contracts and American Recovery and Reinvestment Act (ARRA) Awards), etc. Categories under the Basic Science Department and Clinical Science Department are available as well as the rank of each School of Medicine from 2001-2010. The data in the 2010 Award files was obtained from the Research Portfolio Online Reporting Tool (RePORT) from the National Institutes of Health at http://report.nih.gov/award/trends/AggregateData.cfm. The Award Data correspond to the US Government fiscal year. Awards for 2010 correspond to those granted from 1 October 2009-30 September 2010. There is considerable variation on how universities credit awards and how the NIH deals with these variations.
Proper citation: Ranking Tables of NIH Funding to US Medical Schools in 2010 (RRID:SCR_013272) Copy
A phylogenetic tree of global human mitochondrial DNA variation, based on both coding- and control-region mutations, and including haplogroup nomenclature.
Proper citation: PhyloTree.org (RRID:SCR_012948) Copy
http://www.informatics.jax.org/external/festing/mouse/STRAINS.shtml
A list of major inbred mouse strains from the Jackson laboratories. This list is not being actively maintained (found on Nov 27, 2013).
Proper citation: MGI strains (RRID:SCR_012950) Copy
http://www.nitrc.org/projects/stark_aging/
Behavioral and imaging data from about 120 participants aged 18-89. Data were collected as part of a grant to use high-resolution imaging and advanced behavioral tasks to understand how aging affects the hippocampus and how this is related to age-related cognitive decline. The full dataset includes traditional neuropsycholgical measures, hippocampal-specific behavioral measures, whole-brain DTI, high-resolution DTI of the medial temporal lobes, and structural MRI including segmentation of grey/white/CSF, of cortical regions and of hippocampal subfields.
Proper citation: Stark Cross-Sectional Aging (RRID:SCR_014171) Copy
http://www.meta-analysis.com/index.php
A software package to do meta-analysis which works in a spreadsheet interface and also provides forest plots, which are useful for visualizing between-study heterogeneity.
Proper citation: CMA (RRID:SCR_012779) Copy
Orbitrap Exploris 120 LC-MS spectrometry instruments
Proper citation: Thermo Fisher: Orbitrap Exploris 120 high-resolution mass spectrometer (RRID:SCR_027370) Copy
https://bioinformatics.sdstate.edu/idep/
Integrated web application for differential expression and pathway analysis of RNA-Seq data.
Proper citation: iDEP: Integrated Differential Expression and Pathway analysis (RRID:SCR_027373) Copy
https://github.com/wenmm/EssSubgraph/tree/main
A model algorithm that integrates omics data and network data to predict essential genes.
Proper citation: EssSubgraph (RRID:SCR_027354) Copy
https://microscopecentral.com/products/olympus-bx41-microscope
Olympus BX41 is clinical and research grade microscope. Can be customized. Offered as pre-configured with your choice of viewing head - binocular, ergo binocular, or trinocular. This has Plan N 4x, 10x, 40x, 100x oil objectives but others can be provided if needed. Comes with XY mechanical stage with slide holder and focusable condenser.
Proper citation: Olympus: BX41 Clinical Microscope (RRID:SCR_027355) Copy
https://www.toyobo-global.com/
Japanese company that began as a textile manufacturer in 1882 and has expanded to become a global provider of high-function products, including films, functional polymers, industrial materials, and biotechnology products such as enzymes and diagnostic reagents. The company's business is organized around its core technologies in polymerization, modification, processing, and biotechnology, allowing it to contribute to fields like healthcare, environment, and electronics.
Proper citation: TOYOBO (RRID:SCR_027440) Copy
https://www.revvity.com/product/ivis-spectrum-2-imaging-system-cls158738
In vivo optical imaging system used in preclinical research to non-invasively monitor and quantify biological processes in living animals over time. Designed with innovative camera with patented coating that delivers high sensitivity 2D and 3D bioluminescence and fluorescence imaging capabilities.
Proper citation: Revvity: IVIS Spectrum 2 In Vivo Imaging System (RRID:SCR_027425) Copy
https://jaaba.sourceforge.net/
Web application to create variety of automatic behavior classifiers. These classifiers input the animals' trajectories computed by tracking system, and they output time series indicating whether each animal is performing a given behavior in each video frame. Interactive machine learning for automatic annotation of animal behavior. Used to automatically compute interpretable, quantitative statistics describing video of behaving animals.
Proper citation: Janelia Automatic Animal Behavior Annotator (RRID:SCR_027430) Copy
Target-to-Clinic Contract Research Organization (CRO) headquartered in San Diego, CA USA. ChemDiv executes pre-clinical discovery chemistry and biology for drug development and clinical trials for international portfolio of companies across the entire range of targets with small molecule and biotech drugs. The company operates multiple research and development (R&D) subsidiaries in Russia, Ukraine and China as well as business operations around the world.
Proper citation: ChemDiv (RRID:SCR_027402) Copy
https://www.bruker.com/en/products-and-solutions/mr/nmr/avance-nmr-spectrometer.html
Bruker’s Avance NMR spectrometers are utilized in various scientific fields to elucidate the structure, dynamics, and interactions of molecules. Avance spectrometers are composed of three main hardware components: console, which is the central control unit of the NMR spectrometer, and houses sophisticated electronics for the generation of the pulse sequences and for data acquisition and processing; superconducting magnet to generate homogenous and stable magnetic field to polarize the nuclear spins in the sample; probe for transmitting radiofrequency pulses and detecting the resulting signals from the sample.
Proper citation: Bruker: Avance NMR Spectrometer (RRID:SCR_027378) Copy
Updated knowledgebase integrating more curated associations in plants and animals. manually curated resource of genome-wide genotype-to-phenotype associations for a wide range of species. Database of publicly available GWAS summary statistics. Each GWAS can be browsed with the manhattan plot, risk loci, MAGMA (i.e. gene-based) results, SNP heritability and genetic correlations with other GWAS in the database. Full summary statistics can be downloaded from the original source following the provided links.
Proper citation: GWAS Atlas (RRID:SCR_027466) Copy
https://dmimedicalusa.com/product/aperio-at2-dx-system
400 slide scanner with Aperio ImageScope DX clinical viewing software, and high-performance viewing workstation including color-calibrated medical grade monitors. System can be used standalone, or in conjunction with Aperio Path DX case management software, for streamlined, clinical workflow. Developed from Leica Biosystems,enables to produce consistent, diagnostic quality images, enabling pathologists to diagnose with confidence.
Proper citation: Leica: Aperio AT2 DX System (RRID:SCR_027461) Copy
https://www.beckman.com/landing/ppc/liquid-handlers/synthetic-biology
Non-contact liquid handler that uses Acoustic Droplet Ejection (ADE) technology to precisely transfer nanoliter-sized droplets of liquid for high-throughput applications in pharmaceutical research, drug discovery, and various areas of genomics and biology. Echo 555 / 550 Liquid Handler: 2.5 nL increment; Flow rate:0.25 – 1 µL/sec; Ideal for reactions of 0.05 – 1 µL; Supports 384 and 1536-well source plate formats; Used for transfer of small molecules for high throughput screening.
Proper citation: Bechman Coulter: Labcyte Echo 550 acoustic liquid handler (RRID:SCR_027476) Copy
Agilent 7000E triple quadrupole GC/MS instruments incorporate intelligent technology that reduces instrument downtime and improves run times for maximum productivity in analytical labs. Mass spectrometer is used for routine, high-sensitivity analysis of targeted compounds in complex samples, especially for trace-level detection in areas like food safety and environmental testing.
Proper citation: Agilent: 7000E Triple Quadrupole GC/MS system (RRID:SCR_027552) Copy
https://analysistools.cancer.gov/apc/
Web tool, developed by the U.S. National Cancer Institute (NCI), performs statistical modeling of cancer incidence or mortality data using age-period-cohort analysis. It allows users to examine and interpret temporal trends while disentangling the effects of age, calendar period, and birth cohort. The tool supports data import, graphical output, and model fit assessment via interactive web interface.
Proper citation: NCI Age-Period-Cohort Web Tool (RRID:SCR_027554) Copy
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