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Benchtop concentrator that provides vacuum concentration of DNA and RNA, nucleotides, proteins and other liquid or wet samples. Coated lid provides chemical resistance against aggressive acids and organic solvents, like TFA and DMSO.
Proper citation: Eppendorf: Vacufuge Plus Concentrator (RRID:SCR_019876) Copy
https://www.custombiogenics.com/V-1500AB-Isothermal-LN2-Freezer-p/55156v.htm
Custom BioGenic Systems V1500-AB Isothermal Liquid Nitrogen Freezers offer liquid nitrogen storage temperatures without liquid nitrogen contact. Liquid nitrogen is stored in our patented jacketed space in the wall of the freezer. This technology offers safe dry storage for your samples. With no liquid nitrogen in the storage area the risk of cross contamination and the safety risks associated with the handling of liquid nitrogen are greatly reduced. This also means that the entire storage space can be used for inventory. Our wide lid opening provides easy, unrestricted access to samples and won't affect the temperature inside the freezer. All Isothermal freezers use our time tested and 2301 controller with a dual temperature display, autofill and many additional features. Custom BioGenic Isothermal Liquid Nitrogen Freezers have an industry best temperature gradient that averages -193C inside the storage area.
Proper citation: Custom Biogenic Systems: Dewer V1500-AB Isothermal Freezer (RRID:SCR_019837) Copy
https://www.marshallscientific.com/Eppendorf-5417R-Refrigerated-Centrifuge-p/ep-5417r.htm
Eppendorf 5417R is a refrigerated centrifuge with a brushless motor that spins up to 16,400 RPM with maximum RCF up to 25,000 x g. The Eppendorf 5417R comes equipped with an integrated cooling fan that helps remove residual heat build-up. Compact design and quiet operation (<60dB) makes the Eppendorf 5417R on a crowded lab bench or in a cold room. Automatic rotor detection system senses the rotor type and prevents the centrifuge from exceeding the rotor speed limit. Time (selectable in minutes or seconds; up to 99 minutes or hold) and speed (variable in rpm or rcf) are easily set using the keypad and are displayed on the LED read-out. All functions are microprocessor controlled. The Eppendorf 5417R conforms to International Safety Standard IEC1010 and features a steel plated rotor housing and double locking lid for maximum end user protection. RS 232 interface provides data output for computer control or data recording.
Proper citation: Eppendorf 5417R Refrigerated Centrifuge (RRID:SCR_019847) Copy
https://www.thermofisher.com/order/catalog/product/053591
Reaction system that ensures consistent, pulse free reagent delivery for applications with high background absorbances, such as trace level transition metal analysis using post column reaction with 4 2 pyridylazoresorcinol PAR. Provides reagent with less pressure pulsation by applying constant pressure, eliminating need for pump. Assures optimal flow by applying constant pressure, eliminating need for pump.
Proper citation: Thermo Fisher: Dionex PC10 Postcolumn Pneumatic Delivery (RRID:SCR_019841) Copy
https://us.vwr.com/store/product/4830575/eppendorf-microcentrifuges-5424-5424r
Eppendorf centrifuge 5424 (Eppendorf microcentrifuge models 5424 and 5424R) are versatile 24-place centrifuges that set new standards for silence, speed, and simplicity in operation. The fixed-angle rotor is best for standard applications and centrifugation of biohazardous or radioactive samples. The miniprep spin column rotor features an extra-high rim to support open tube lids. The PCR tube rotor is best in "knockdown" spin applications for liquids after reaction setup. Certified aerosol-tight rotors have red screw-tops for easy identification. These are the direct replacements for the legendary models 5415D and 5415R.
Proper citation: Eppendorf: 5424 Microcentrifuge (RRID:SCR_019848) Copy
Cross-over Centrifuge 5430 and 5430 R combine the best features of a microcentrifuge (small footprint) and multipurpose centrifuge (versatility) in one instrument. These centrifuges spin rotors for Eppendorf tubes and PCR strips as you would expect from any microcentrifuge. But that's not all. In a compact size, Centrifuge 5430 and 5430 R also accommodate rotors for microplates and 15/50 mL conical tubes. Now, the rotor program has been expanded with additional Eppendorf QuickLock rotors. This includes 48-place rotors (1.5/2.0 mL), a 16-place rotor for Eppendorf Tubes 5.0 mL and a swing-bucket rotor (24 × 1.5/2.0 mL). With their unmatched versatility, Centrifuge 5430 and Centrifuge 5430 R are the flagship products among the Eppendorf microcentrifuge portfolio. Available as keypad or knob variant
Proper citation: Eppendorf: 5430R Microcentrifuge (RRID:SCR_019849) Copy
https://www.thermofisher.com/order/catalog/product/DA-TSQ9K-AEI
Thermo Scientific Dioxin Analyzer to deliver quantitation of dioxins and dl-PCBs in food samples in compliance with EU regulations. Ensures quantitation of polychlorinated dibenzo p dioxins PCDDs, polychlorinated dibenzo furans PCDFs and dioxin like polychlorinated biphenyls dl PCBs in food and feed samples. Dioxin Analyzer includes Thermo Scientific TSQ 9000 Triple Quadrupole GC-MS/MS, consumables, system suitability check standard solutions, e-workflow with acquisition method, data processing software, isotope dilution calculation, and reporting methods in compliance with EU regulations.
Proper citation: Thermo Fisher: Dioxin Analyzer Mass Spectrometry System (RRID:SCR_019851) Copy
Spectrophotometer that processes data, records at fixed wavelengths and evaluates results. For specific methods, additional measurements are recorded and displayed as graph, making impurities quick to identify.
Proper citation: Eppendorf: Biophotometer D30 Photometer (RRID:SCR_019853) Copy
Cross-over Centrifuge 5430 and 5430 R combine the best features of a microcentrifuge (small footprint) and multipurpose centrifuge (versatility) in one instrument. These centrifuges spin rotors for Eppendorf tubes and PCR strips as you would expect from any microcentrifuge. But that's not all. In a compact size, Centrifuge 5430 and 5430 R also accommodate rotors for microplates and 15/50 mL conical tubes. Now, the rotor program has been expanded with additional Eppendorf QuickLock rotors. This includes 48-place rotors (1.5/2.0 mL), a 16-place rotor for Eppendorf Tubes 5.0 mL and a swing-bucket rotor (24 × 1.5/2.0 mL). With their unmatched versatility, Centrifuge 5430 and Centrifuge 5430 R are the flagship products among the Eppendorf microcentrifuge portfolio. Available as keypad or knob variant
Proper citation: Eppendorf: 5430 Microcentrifuge (RRID:SCR_019854) Copy
ibrVating blade microtome that is capable of preparing sections in the range of 10 to 1000 micrometres from a wide variety of both biological and materials specimens. The blade is clamped at a pre-set angle on a horizontally disposed ram which runs on precision engineered cross roller linear bearings.
Proper citation: EMCorp: H1200 Vibratome (RRID:SCR_019850) Copy
https://www.depts.ttu.edu/casm/includes/Instruments/8100SOP-1.php
Hitachi H-8100 TEM is a research grade scanning/transmission electron microscope (STEM) with analytical and high resolution imaging capabilities. Systematic theoretical instruction combined with practical hands-on training is the best way to thoroughly understand the utility and capabilities of this complex and delicate instrument. These instructions are meant only as a guide to the basic, daily alignments and operations of the H-8100, i.e. general imaging and diffraction. It is by no means a comprehensive guide to all operations of the microscope including ultra-high resolution imaging, SEM, EDX, cryo, and the various diffraction techniques. These advanced, specialized techniques will be dealt with on an as-need basis after mastery of the basic operations has been demonstrated.
Proper citation: Hitachi: 8100 Transmission Electron Microscope (RRID:SCR_020012) Copy
A clade oriented, community curated database containing genomic, genetic, phenotypic and taxonomic information for plant genomes. Genomic information is presented in a comparative format and tied to important plant model species such as Arabidopsis. SGN provides tools such as: BLAST searches, the SolCyc biochemical pathways database, a CAPS experiment designer, an intron detection tool, an advanced Alignment Analyzer, and a browser for phylogenetic trees. The SGN code and database are developed as an open source project, and is based on database schemas developed by the GMOD project and SGN-specific extensions.
Proper citation: SGN (RRID:SCR_004933) Copy
http://spliceinfo.mbc.nctu.edu.tw/
A database of mRNA alternative splicing in the human genome. Within it, several modes of mRNA alternative splicing, such as exon skipping, alternative 5''-splicing sites, alternative 3''-splicing sites and mutually exclusive exons are computationally derived and extracted. Finally, for each type of alternative splicing, the flanking intronic sequences are collected and then exploited by motif discovery tools. The tissue-specific information and gene functionalities that correspond to the selected regions are also considered. The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splicing silencer (ESS) and other intronic splicing motifs.
Proper citation: SpliceInfo (RRID:SCR_005100) Copy
https://scicrunch.org/scicrunch/data/source/nlx_154697-6/search?q=*&l=
A virtual database currently indexing authoritative information on disease and treatment options from NINDS Disorder List and PubMed Health.
Proper citation: Integrated Disease (RRID:SCR_004892) Copy
http://exon.cshl.org/cgi-bin/atprobe/atprobe.pl
Arabidopsis thaliana promoter binding element database that focuses on specific binding elements on known genes, found with experimental methods.
Proper citation: AtProbe (RRID:SCR_005412) Copy
http://cgi-www.daimi.au.dk/cgi-chili/datfap/frontdoor.py
A database of transcription factors from 13 plant species, and PCR primers for around 90% of them.
Proper citation: DATFAP (RRID:SCR_005413) Copy
http://bioinfozen.uncc.edu/tfindit/
A database and web service for structural bioinformatics studies of transcription factor (TF)-DNA interactions. Various datasets can be generated based on one or more search options specified by users.
Proper citation: TFinDIT (RRID:SCR_005411) Copy
Database for identifying orthologous phenotypes (phenologs). Mapping between genotype and phenotype is often non-obvious, complicating prediction of genes underlying specific phenotypes. This problem can be addressed through comparative analyses of phenotypes. We define phenologs based upon overlapping sets of orthologous genes associated with each phenotype. Comparisons of >189,000 human, mouse, yeast, and worm gene-phenotype associations reveal many significant phenologs, including novel non-obvious human disease models. For example, phenologs suggest a yeast model for mammalian angiogenesis defects and an invertebrate model for vertebrate neural tube birth defects. Phenologs thus create a rich framework for comparing mutational phenotypes, identify adaptive reuse of gene systems, and suggest new disease genes. To search for phenologs, go to the basic search page and enter a list of genes in the box provided, using Entrez gene identifiers for mouse/human genes, locus ids for yeast (e.g., YHR200W), or sequence names for worm (e.g., B0205.3). It is expected that this list of genes will all be associated with a particular system, trait, mutational phenotype, or disease. The search will return all identified model organism/human mutational phenotypes that show any overlap with the input set of the genes, ranked according to their hypergeometric probability scores. Clicking on a particular phenolog will result in a list of genes associated with the phenotype, from which potential new candidate genes can identified. Currently known phenotypes in the database are available from the link labeled ''Find phenotypes'', where the associated gene can be submitted as queries, or alternately, can be searched directly from the link provided.
Proper citation: Phenologs (RRID:SCR_005529) Copy
http://www.youtube.com/user/WholeBrainCatalog?feature=autoshare
Videos uploaded to YouTube by the Whole Brain Catalog.
Proper citation: WholeBrainCatalog's Channel - YouTube (RRID:SCR_005436) Copy
Service that partners with independent scholarly publishers, societies, associations, and university presses to facilitate the digital dissemination of 1779 journals, reference works, books, and proceedings. It also offers a complete manuscript submission, tracking, peer review, and publishing system for journal editors.
Proper citation: HighWire (RRID:SCR_005316) Copy
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