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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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VarySysDB Resource Report Resource Website |
VarySysDB (RRID:SCR_005880) | database, data or information resource | It consists of a Genome Browser, an LD Search System, and the VaryGene 2 system. The Generic Genome Browser is a combination of database and interactive Web page for manipulating and displaying annotations on genomes, while LDSearchSystem is a search system for linkage disequilibrium (LD) bins. VaryGene 2 is a system to search, display, and download our research results on human polymorphism based on publicly available data and annotations of transcripts presented by H-InvDB. VaryGene 2 provides information about single nucleotide polymorphisms (SNPs), deletion-insertion polymorphisms (DIPs), short tandem repeats (STRs), single amino acid repeats (SARs), structural variation (or copy number variations: CNVs), and their relations to the genome, transcripts, and functional domains. Users can search by polymorphisms, transcripts, STRs/SARs, and CNVs. | genome, human polymorphism | has parent organization: National Institute of Advanced Industrial Science and Technology | nif-0000-03621 | SCR_005880 | VarySysDB | 2026-08-08 12:03:55 | 0 | |||||||||
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IndelFR - Indel Flanking Region Database Resource Report Resource Website 1+ mentions |
IndelFR - Indel Flanking Region Database (RRID:SCR_006050) | IndelFR | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. Indel Flanking Region Database is an online resource for indels and the flanking regions of proteins in SCOP superfamilies, including amino acid sequences, lengths, locations, secondary structure constitutions, hydrophilicity / hydrophobicity, domain information, 3D structures and so on. It aims at providing a comprehensive dataset for analyzing the qualities of amino acid insertion/deletions(indels), substitutions and the relationship between them. The indels were obtained through the pairwise alignment of homologous structures in SCOP superfamilies. The IndelFR database contains 2,925,017 indels with flanking regions extracted from 373,402 structural alignment pairs of 12,573 non-redundant domains from 1053 superfamilies. IndelFR has already been used for molecular evolution studies and may help to promote future functional studies of indels and their flanking regions. | indel, flanking region, protein, structural domain, domain, protein superfamily, protein structure, insertion/deletion, insertion, deletion, protein sequence, sequence, structure, protein domain, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: SCOP: Structural Classification of Proteins is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: Shandong University; Shandong; China |
Independent Innovation Foundation of Shandong University 2009JC006; National Natural Science Foundation of China 30970092; National Natural Science Foundation of China 61070017; Scientific Research Reward Fund for excellent Young and Middle-Aged scientists in Shandong Province 20090451326 |
PMID:22127860 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:indelfr, nlx_151448 | https://bio.tools/indelfr | SCR_006050 | IndelFR: Indel Flanking Region Database, Indel Flanking Region Database | 2026-08-08 12:04:06 | 2 | ||||
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UTRome.org Resource Report Resource Website 1+ mentions |
UTRome.org (RRID:SCR_005878) | database, data or information resource | This database is intended as a comprehensive resource for UTR (Untranslated Region) biology in C. elegans. The database provides detailed information on UTR structures for all protein-coding mRNAs, and includes annotations extracted from other databases (such as WormBase and PicTar) as well as new annotations generated as part of the NYU UTRome project (including preliminary characterization of UTR clones, USTs (UTR sequence tags), curated sequences, and computational and experimental analysis of functional elements). Examples of functional elements within UTRs include predicted and validated microRNA (miRNA) binding sites (responsible for post-transcriptional gene regulation), putative consensus signals for polyA addition, and predicted secondary structures (which may influence the biological activity of UTRs). The UTRome project is part of the ModEncode Consortium, an NIH initiative to characterize at a genomic scale functional sequence elements encoded in the worm (C. elegans) and fly (D. melanogaster) genomes. UTRs are important portions of mRNAs required for post-transcriptional regulation by interacting with proteins or non-coding RNAs (e.g. microRNAs). To study the role of UTRs we are building a UTR database for C. elegans. | has parent organization: New York University; New York; USA | nif-0000-03620 | SCR_005878 | UTRome | 2026-08-08 12:04:06 | 6 | ||||||||||
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ROAR Resource Report Resource Website 10+ mentions |
ROAR (RRID:SCR_005951) | ROAR | database, data or information resource, registry | Listing of institutional repositories for depositing preprints of published materials with the aim of promoting the development of open access by providing timely information about the growth and status of repositories throughout the world. Open access to research maximizes research access and thereby also research impact, making research more productive and effective. Repository Types: * Research Institutional or Departmental * Research Multi-institution Repository * Research Cross-Institutional * e-Journal/Publication * e-Theses * Database/A&I Index * Research Data * Open and Linked Data * Learning and Teaching Objects * Demonstration * Web Observatory * Other Repository Software: * ARNO * Bepress * CDS Invenio * ContentDM by OCLC * DIGIBIB * DigiTool * DiVA * DoKS * DSpace * EDOC * EPrints * Equella * ETD-db * Fedora ** Fez * Greenstone * HAL * i-Tor * IntraLibrary * Keystone DLS * MiTOS * MyCoRe * Open Journal System * Open Repository * OPUS (Open Publications System) * Other softwares (various) * PMB Services * SBCAT * SciX * SobekCM * WIKINDX * Zentity | archive, repository, registry, software, open access |
is listed by: FORCE11 is related to: ROARMAP: Registry of Open Access Repositories Mandatory Archiving Policies is related to: ROARMAP: Registry of Open Access Repositories Mandatory Archiving Policies has parent organization: University of Southampton; Southampton; United Kingdom |
JISC | Open unspecified license, The community can contribute to this resource | nlx_151309 | SCR_005951 | Registry of Open Access Repositories | 2026-08-08 12:04:06 | 22 | ||||||
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NIGMS - YouTube Resource Report Resource Website |
NIGMS - YouTube (RRID:SCR_005678) | NIGMS - YouTube | video resource, data or information resource | YouTube videos provided by the National Institute of General Medical Sciences (NIGMS). | has parent organization: National Institute of General Medical Sciences | NIGMS | nlx_149378 | SCR_005678 | National Institute of General Medical Sciences - YouTube | 2026-08-08 12:04:05 | 0 | ||||||||
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Tree of Life Web Project Resource Report Resource Website 10+ mentions |
Tree of Life Web Project (RRID:SCR_005673) | ToL | database, data or information resource | A collection of information about biodiversity compiled collaboratively by hundreds of expert and amateur contributors. Its goal is to contain a page with pictures, text, and other information for every species and for each group of organisms, living or extinct. Connections between Tree of Life web pages follow phylogenetic branching patterns between groups of organisms, so visitors can browse the hierarchy of life and learn about phylogeny and evolution as well as the characteristics of individual groups. | genomics, invertebrate, taxonomy, image, phylogeny, FASEB list |
is listed by: re3data.org has parent organization: University of Arizona; Arizona; USA |
NSF DBI-0078294; NSF DUE-0333715; NSF EF-0531754 |
The community can contribute to this resource, Acknowledgement requested, Copyrighted, Creative Commons Attribution-NonCommercial License, (ToL Glossary), Creative Commons Attribution License | r3d100010351, nif-0000-03586 | https://doi.org/10.17616/R30K6X | http://phylogeny.arizona.edu/tree/phylogeny.html | SCR_005673 | Tree of Life | 2026-08-08 12:04:04 | 39 | ||||
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GoPubMed Resource Report Resource Website 10+ mentions |
GoPubMed (RRID:SCR_005823) | GoPubMed | database, data or information resource, service resource | A web server which allows users to explore PubMed search results with the Gene Ontology, a hierarchically structured vocabulary for molecular biology. GoPubMed submits a user''''s keywords to PubMed, retrieves the abstracts, detects Gene Ontology terms in the abstracts, displays the subset of Gene Ontology relevant to the original query, and allows the user to browse through the ontology displaying associated papers and their GO annotation. Platform: Online tool | other analysis, literature curation and exploration, gene ontology, pubmed, literature, bio.tools |
is listed by: OMICtools is listed by: Gene Ontology Tools is listed by: Debian is listed by: bio.tools is related to: Gene Ontology is related to: PubMed has parent organization: Biotechnology Center of the TU Dresden |
European Union IST-2004-506779 | PMID:15980585 | Free for academic use | biotools:gopubmed, nlx_149328, OMICS_01183 | https://bio.tools/gopubmed | SCR_005823 | 2026-08-08 12:04:01 | 29 | |||||
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NRG-CING Resource Report Resource Website 1+ mentions |
NRG-CING (RRID:SCR_006079) | NRG-CING | database, data or information resource | NRG-CING presents a complete validation report for all 9,000+ wwPDB NMR entries including remediated experimental data such as chemical shifts from BMRB and restraints from NRG . These CING reports are compiled from internal analyses and those by CCPN, DSSP, PROCHECK-NMR/Aqua, ShiftX, Talos+, Vasco, Wattos, and WHAT_CHECK. The NRG-CING website is a collection of CING reports that has been pre-calculated for all PDB files solved by NMR. (See website for more information on CING.) In case the underlying experimental data is available, these have been cleaned up and made syntactically and semantically correct and homogeneous. For many macromolecular NMR ensembles from the Protein Data Bank (PDB) the experiment-based restraint lists used in the structure calculation are accessible, while other experimental data, mainly chemical shift values, are often available from the BioMagResBank. Assessment of the quality of the structural result is paramount to their usage and a combined, integrated repository of both input data and structural results greatly facilitates such an analysis. In addition, the accuracy and precision of the coordinates in these macromolecular NMR ensembles can be improved by recalculations using the available experimental data and present-day software with improved protocols and force fields. Such efforts, however, generally fail on over half of all deposited structures due to the syntactic and semantic heterogeneity of the data and the wide variety of formats used for their deposition. We have combined the cleaned-up restraints information from the NMR Restraints Grid (NRG) database with available chemical shifts from the BioMagResBank in the weekly updated NRG-CING database. Eleven programs, in addition to CING itself, have been included in the NRG-CING production pipeline to arrive at validation reports that list for each entry the potential inconsistencies between the coordinates and the available restraint and chemical shift data. The longitudinal validation of this data yielded a set of indicators that can be used to judge the quality of every macromolecular structure solved with NMR. The cleaned up NMR experimental datasets and the validation reports are freely available. | macromolecular structure, nmr, macromolecule, restraint, chemical shift, validation report, validation, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Worldwide Protein Data Bank (wwPDB) is related to: NMR Restraints Grid is related to: Biological Magnetic Resonance Data Bank (BMRB) has parent organization: Radboud University; Nijmegen; The Netherlands |
Netherlands Organization for Scientific Research (NWO) 700.55.443; Netherlands Bioinformatics Centre (NBIC) ; EU FP6 LSHG-CT-2005-018988; EU FP6 LHSG-CT-2004-512092; EU FP7 261572; Brussels Institute for Research and Innovation BB2B 2010-1-12; NLM LM05799 |
PMID:22139937 | Free | nlx_151486, biotools:nrg-cing | https://bio.tools/nrg-cing | SCR_006079 | 2026-08-08 12:04:02 | 1 | |||||
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YanHuang Project Resource Report Resource Website 50+ mentions |
YanHuang Project (RRID:SCR_006077) | database, data or information resource | This database presents the entire DNA sequence of the first diploid genome sequence of a Han Chinese, a representative of Asian population. The genome, named as YH, represents the start of YanHuang Project, which aims to sequence 100 Chinese individuals in 3 years. It was assembled based on 3.3 billion reads (117.7Gbp raw data) generated by Illumina Genome Analyzer. In total of 102.9Gbp nucleotides were mapped onto the NCBI human reference genome (Build 36) by self-developed software SOAP (Short Oligonucleotide Alignment Program), and 3.07 million SNPs were identified. The personal genome data is illustrated in a MapView, which is powered by GBrowse. A new module was developed to browse large-scale short reads alignment. This module enabled users track detailed divergences between consensus and sequencing reads. In total of 53,643 HGMD recorders were used to screen YH SNPs to retrieve phenotype related information, to superficially explain the donor's genome. Blast service to align query sequences against YH genome consensus was also provided. | genome, genetic, adult, chromosome, clinical, control, genomic, human, normal, FASEB list | has parent organization: BGI; Shenzhen; China | nif-0000-03654 | SCR_006077 | YH1 | 2026-08-08 12:03:56 | 53 | |||||||||
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TRbase: A Database Of Tandem Repeats In The Human Genome Resource Report Resource Website 1+ mentions |
TRbase: A Database Of Tandem Repeats In The Human Genome (RRID:SCR_005658) | database, data or information resource | This TRbase is a relational tandem repeat database that relates tandem repeats to gene locations and disease genes of the human genome. The TRbase stores both perfect and imperfect repeats of 1 to 2000 bp unit lengths that were identified using the Tandem Repeat Finder program. Disease information for all 24 chromosomes was retrieved from the Online Mendelian Inheritance in Man (OMIM) database. There are five main search forms by which the user may query the database: 1. The Advanced tandem repeat search: This allows a complete search for tandem repeats using a combination of criteria, such as total tandem repeat length, repeat unit length, copy number of the repeats, percentage matches and the consensus repeat pattern. On submission, the number of repeats and the detailed tandem repeat characteristics of each repeat that match the user query are tabulated. 2. The Main search: This relates tandem repeat data to genes and diseases. The user may specify a gene of interest to view details of all repeats associated with it or search for tandem repeats present in a particular disease by entering the name/keyword for the disease or the MIM number of the disease gene. 3. The Composite search: This more advanced search allows the user to query specifically for repeats present in exons, introns or intergenic regions of a gene or disease gene. 4. The Gene Search: Further information on genes can be available by a simple gene name search on this page. 5. The Disease search: This allows extensive information on disease genes on all chromosomes of the human genome. Searching for a MIM number, or keyword searches specifying the features of the disease, will retrieve the information on the disease and the chromosome in which the disease gene occurs. Each entry retrieved is linked to the OMIM database for detailed literature and gene map information on the disease. | has parent organization: University of Exeter; Exeter; United Kingdom | nif-0000-03583 | SCR_005658 | TRbase | 2026-08-08 12:03:53 | 1 | ||||||||||
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PoSSuM Resource Report Resource Website 10+ mentions |
PoSSuM (RRID:SCR_006109) | PoSSuM | database, data or information resource | Relational database of all the discovered similar pairs in a huge number of protein-ligand binding sites with annotations of various types (e.g., CATH, SCOP, EC number, Gene ontology). They used a tremendously fast algorithm called SketchSort that enables the enumeration of similar pairs in a huge number of protein-ligand binding sites. They conducted all-pair similarity searches for 3.4 million known and potential binding sites using the proposed method and discovered over 24 million similar pairs of binding sites. PoSSuM enables rapid exploration of similar binding sites among structures with different global folds as well as similar ones. Moreover, PoSSuM is useful for predicting the binding ligand for unbound structures. Basically, the users can search similar binding pockets using two search modes: # Search K is useful for finding similar binding sites for a known ligand-binding site. Post a known ligand-binding site (a pair of PDB ID and HET code) in the PDB, and PoSSuM will search similar sites for the query site. # Search P is useful for predicting ligands that potentially bind to a structure of interest. Post a known protein structure (PDB ID) in the PDB, and PoSSuM will search similar known-ligand binding sites for the query structure. | binding site, ligand-binding site, protein function, protein, prediction, small molecule, drug discovery |
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: University of Tokyo; Tokyo; Japan has parent organization: National Institute of Advanced Industrial Science and Technology |
Japan Society for the Promotion of Science KAKENHI 21680025; Japan Society for the Promotion of Science KAKENHI 23500374 |
PMID:22135290 PMID:22113700 |
Freely available, Acknowledgement required | nlx_151581 | SCR_006109 | PoSSuM - POcket Similarity Search Using Multiple-Sketches, Pocket Similarity Search using Multiple-Sketches (PoSSuM), PoSSuM Database, POcket Similarity Search Using Multiple-Sketches | 2026-08-08 12:04:07 | 30 | |||||
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Tandem Repeats Database Resource Report Resource Website 10+ mentions |
Tandem Repeats Database (RRID:SCR_005659) | TRDB | database, data or information resource | A public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis. These currently include the Tandem Repeats Finder algorithm, query and filtering capabilities for finding particular repeats of interest, repeat clustering algorithms based on sequence similarity, polymorphism prediction based on common patterns of mutation, PCR primer selection, and data download in a variety of formats. In addition, TRDB serves as a centralized research workbench, provides storage space for results of analysis, and permits collaborators to privately share their data and analysis. | has parent organization: Boston University; Massachusetts; USA | nif-0000-03584 | SCR_005659 | Tandem Repeats Database | 2026-08-08 12:04:04 | 14 | |||||||||
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JISC Open Citations Resource Report Resource Website 10+ mentions |
JISC Open Citations (RRID:SCR_005936) | Open Citations | database, data or information resource | Database of biomedical literature citations, harvested from the reference lists of all open access articles in PubMed Central that reference ~20% of all PubMed Central papers (approx. 3.4 million papers), including all the highly cited papers in every biomedical field. All the data are freely available for download and reuse. The web site allows these bibliographic records and citations to be browsed, individual articles to be selected, and its citation network to be visualized in a variety of displays. Details of each selected reference, and the data and diagrams for its citation network, may be downloaded in a variety of formats, while the entire Open Citations Corpus can be downloaded from our source data page in several formats including RDF and BibJSON. Their aim for the future is to work with publishers to make available the reference lists from many more current and recent journal articles, starting with the biomedical literature, and to make the citations contained within them available as Open Linked Data in the manner demonstrated by the existing exemplar data available here. | biomedical, literature, citation, open access, bibliographic, rdf triplestore, biomedical literature, open linked data, reference |
is listed by: FORCE11 is related to: PubMed Central is related to: CiTO - the Citation Typing Ontology has parent organization: University of Oxford; Oxford; United Kingdom |
JISC ; jiscEXPO strand |
Creative Commons Zero License, 1.0 | nlx_151283 | SCR_005936 | 2026-08-08 12:04:06 | 13 | |||||||
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WorfDB Resource Report Resource Website 1+ mentions |
WorfDB (RRID:SCR_006028) | database, data or information resource | Database that integrates and disseminates the data from the cloning of complete set of predicted protein-encoding ORFs of Caenorhabditis elegans. It also allows the community to search for availability and quality of cloned ORFs. So far, ORF sequence tags (OSTs) obtained for all individual clones have allowed exon structure corrections for ORFs originally predicted by the C. elegans sequencing consortium. The database contains this OST information along with data pertinent to the cloning process. | open reading frame, c elegans, orf sequence tag |
has parent organization: Dana-Farber Cancer Institute has parent organization: Harvard Medical School; Massachusetts; USA |
NIGMS ; MGRI ; NHGRI 5R01HG01715-02; NCI 7 R33 CA81658-02 |
PMID:12519990 | nif-0000-03644 | SCR_006028 | WorfDB - Worm ORF Database, Worm ORFeome DataBase, Worm ORFeome | 2026-08-08 12:03:56 | 9 | |||||||
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Transcription Regulatory Regions Database Resource Report Resource Website 1+ mentions |
Transcription Regulatory Regions Database (RRID:SCR_005723) | database, data or information resource | TRRD is a unique information resource, accumulating information on structural and functional organization of transcription regulatory regions of eukaryotic genes. Only experimentally confirmed information is included into TRRD. Transcription Regulatory Regions Database (TRRD) is developed for accumulation of experimental information on the structure-function features of regulatory regions of eukaryotic genes. Each entry of TRRD corresponds to a particular gene. The annotated part of an entry includes the structure-function description of gene regulatory regions composed by regulatory units (promoters, silencers, enhancers, etc.), individual transcription factor binding sites that constitute these regulatory units, and transcription factors that bind to these sites. In addition, the entry contains the gene expression patterns and references to original publications. | has parent organization: Siberian Branch of the Russian Academy of Sciences; Novosibirsk; Russia | PMID:11752324 | nif-0000-03594 | SCR_005723 | TRRD | 2026-08-08 12:04:00 | 9 | |||||||||
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Dr.VIS - Human Disease-Related Viral Integration Sites Resource Report Resource Website 1+ mentions |
Dr.VIS - Human Disease-Related Viral Integration Sites (RRID:SCR_005965) | Dr.VIS, Dr. VIS | database, data or information resource | Dr.VIS collects and locates human disease-related viral integration sites. So far, about 600 sites covering 5 virus organisms and 11 human diseases are available. Integration sites in Dr.VIS are located against chromosome, cytoband, gene and refseq position as specific as possible. Viral-cellular junction sequences are extracted from papers and nucleotide databases, and linked to corresponding integration sites Graphic views summarizing distribution of viral integration sites are generated according to chromosome maps. Dr.VIS is built with a hope to facilitate research of human diseases and viruses. Dr.VIS provides curated knowledge of integration sites from chromosome region narrow to genomic position, as well as junction sequences if available. Dr.VIS is an open resource for free. | disease, virus, viral integration, viral integration site, integration site, malignant disease, chromosome region, genomic position, viral-host junction sequence, junction sequence, oncogene, chromosome, catalog, graphic interface, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Tongji University; Shanghai; China |
State Key Basic Research Program 973 2011CB910204; National Natural Science Foundation of China ; Major State Basic Research Development Program ; 863 Hi-Tech Program of China ; National Key Technology R&D Program in the 11th Five Year Plan of China ; Major State Basic Research Development Program of China |
PMID:22135288 | Open - Free to browse and download data in Dr.VIS. | nlx_151323, biotools:dr.vis | http://www.scbit.org/dbmi/drvis, https://bio.tools/dr.vis | SCR_005965 | Dr. VIS - Database of Human Disease-related Viral Integration Sites, Database of Human Disease-related Viral Integration Sites | 2026-08-08 12:03:55 | 1 | ||||
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FunTree Resource Report Resource Website 1+ mentions |
FunTree (RRID:SCR_006014) | FunTree | database, data or information resource | FunTree provides a range of data resources to detect the evolution of enzyme function within distant structurally related clusters within domain super families as determined by CATH. To access the resource enter a specific CATH superfamily code or search for a structure / sequence / function (either via a EC code or KEGG ligand / reaction ID, PDB ID or UniProtKB ID). Or browse the resource via superfamily / function / structure / metabolites & reactions via the menu on the left panel. FunTree is a new resource that brings together sequence, structure, phylogenetic, chemical and mechanistic information for structurally defined enzyme superfamilies. Gathering together this range of data into a single resource allows the investigation of how novel enzyme functions have evolved within a structurally defined superfamily as well as providing a means to analyse trends across many superfamilies. This is done not only within the context of an enzyme''''s sequence and structure but also the relationships of their reactions. Developed in tandem with the CATH database, it currently comprises 276 superfamilies covering 1800 (70%) of sequence assigned enzyme reactions. Central to the resource are phylogenetic trees generated from structurally informed multiple sequence alignments using both domain structural alignments supplemented with domain sequences and whole sequence alignments based on commonality of multi-domain architectures. These trees are decorated with functional annotations such as metabolite similarity as well as annotations from manually curated resources such the catalytic site atlas and MACiE for enzyme mechanisms. | enzyme function, enzyme superfamily, enzyme, sequence, structure, phylogenetic, chemical, mechanistic, functional annotation, superfamily, gold standard, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: CATH: Protein Structure Classification is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: KEGG is related to: UniProtKB has parent organization: European Bioinformatics Institute |
European Molecular Biology Laboratory; Heidelberg; Germany ; BBSRC ; Wellcome Trust 081989/Z/07/A; DOE contract DE-AC02-06CH11357 |
PMID:22006843 | Free | biotools:funtree, nlx_151402 | https://bio.tools/funtree | SCR_006014 | 2026-08-08 12:03:56 | 4 | |||||
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ProQuest Resource Report Resource Website 5000+ mentions |
ProQuest (RRID:SCR_006093) | ProQuest | database, data or information resource, service resource | Service that helps users navigate the research journey, connecting people and information from dissertations to governmental and cultural archives to news, in all its forms. Its role is essential to libraries and other organizations whose missions depend on the delivery of complete, trustworthy information. ProQuest''s massive information pool, built through partnerships with content creators, is navigated through technological innovations that enable users to quickly find just the right information. The ProQuest platform moves beyond navigation to empower researchers to use, create, and share contentaccelerating research productivity. The Summon web-scale discovery service is a boon to academic libraries worldwide. ProQuest expanded into corporate and government markets, with the ProQuest Dialog service and acquiring Congressional Information Services and University Publications of America. It acquired ebrary, expanding ProQuest''s content base to include e-books and adding to the technology expertise resident across the enterprise, which also includes such units as Serials Solutions, RefWorks-COS, and Bowker. | library, dissertation, archive, news, information, culture, research, corporate, government, academia, e-book, publication, article |
is parent organization of: ProQuest Dissertations and Theses Global is parent organization of: ProQuest Dissertation Publishing is parent organization of: Dialog is parent organization of: COS |
nlx_151557 | SCR_006093 | ProQuest LLC | 2026-08-08 12:04:02 | 6776 | ||||||||
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ViTa- Virus microRNA Target Resource Report Resource Website 10+ mentions |
ViTa- Virus microRNA Target (RRID:SCR_005955) | database, data or information resource | A database which collects virus data from miRBase and ICTV, VirGne, VBRC., etc, including known viral miRNAs and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa also provides effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons. Additionally, multiple functions and graphical web interface are designed and implemented to help users to investigate the microRNA roles in viral existence., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | has parent organization: National Chiao Tung University; Hsinchu; Taiwan | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03638 | SCR_005955 | ViTa | 2026-08-08 12:03:55 | 14 | |||||||||
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TRIPLES- a database of TRansposon-Insertion Phenotypes Localization and Expression in Saccharomyces Resource Report Resource Website 1+ mentions |
TRIPLES- a database of TRansposon-Insertion Phenotypes Localization and Expression in Saccharomyces (RRID:SCR_005714) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. TRIPLES provides full public access to the data and reagents generated from ongoing functional analysis of the yeast genome. Using a novel transposon-tagging approach, we have analyzed disruption phenotypes, gene expression, and protein localization on a genome-wide scale in Saccharomyces. The data generated from this study may be accessed through our database, TRIPLES ; additionally, all reagents generated in this study are freely available from on-line order forms (linked to TRIPLES as well). multipurpose, mini-transposon, mutant alleles, phenotypes, protein localization, gene expression, Saccharomyces cerevisiae, Web-accessible database, transposon-mutagenized yeast strains, downloaded, tab-delimited, text file, protein localization data, fluorescent micrographs, staining patterns, indirect immunofluorescence analysis of indicated epitope-tagged proteins, subcellular localization of the yeast proteome, visual library, Nucleic Acid Sequence Data Library (GenBank), clone report, graphic map, transposon insertions (represented as flags) | fluorescent micrographs, fungus genome, gene expression, genome, clone report, downloaded, genomics, graphic map, indirect immunofluorescence analysis of indicated epitope-tagged proteins, microarray data, mini-transposon, multipurpose, mutant alleles, nucleic acid sequence data library (genbank), phenotypes, protein localization, protein localization data, saccharomyces cerevisiae, staining patterns, subcellular localization of the yeast proteome, tab-delimited, text file, transposon insertions (represented as flags), transposon-mutagenized yeast strains, visual library, web-accessible database, yeast | has parent organization: Yale University; Connecticut; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03589 | SCR_005714 | TRIPLES | 2026-08-08 12:04:05 | 3 |
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