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http://purl.bioontology.org/ontology/OGDI

Ontology used to model the scientific investigation, especially Genome-Wide Association Study (GWAS), to find out genetic susceptibility factor to disease, such as Diabetes. It models the genetic varaints, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes, :Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism Disorder (OGMD) .

Proper citation: Ontology for Genetic Disease Investigations (RRID:SCR_010385) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/IMMDIS

Ontology generated as part of the Bioinformatics Integration Support Contract (BISC) that is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases. Specific information may be available about a class, including Preferred_Name, DEFINITION, Synonym, etc.

Proper citation: Immune Disorder Ontology (RRID:SCR_010344) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/InterNano

A custom-built terminology to describe the nanomanufacturing enterprise.

Proper citation: InterNano Nanomanufacturing Taxonomy (RRID:SCR_010346) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/INO

An ontology in the domain of interaction network that aims to standardize interaction network annotation, integrate various interaction network data, and support computer-assisted reasoning. It is aimed to represent general interactions (e.g., molecular interactions) and interaction networks (e.g., Bayesian network). INO was initiated by supporting literature mining related to interactions and interaction networks. INO aligns with BFO. INO is a community-based ontology, and its development follows the OBO Foundry principles.

Proper citation: Interaction Network Ontology (RRID:SCR_010347) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICD10

Ontology of the International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva, a medical classification list by the World Health Organization (WHO).

Proper citation: International Classification of Diseases Version 10 (RRID:SCR_010349) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICD10PCS

Ontology of the International Classification of Diseases Version 10, ICD-10-PCS (Procedure Coding System), 2009.

Proper citation: International Classification of Diseases Version 10 - Procedure Coding System (RRID:SCR_010351) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONL-MR-DA

Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Magnetic Resonance Imaging (MRI) dataset acquisition, i.e. MRI protocols, and MRI sequence parameters, developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeneous resources in neuroimaging. In particular, it includes a multi-axial classification of MR sequences.

Proper citation: MR dataset acquisition (RRID:SCR_010352) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MEO

Ontology for organismal habitats (especially focused on microbes)

Proper citation: Metagenome and Microbes Environmental Ontology (RRID:SCR_010359) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MIXSCV

Controlled vocabularies for the MIxS (Minimal Information about any Sequence) family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists.

Proper citation: Minimal Information about any Sequence Controlled Vocabularies (RRID:SCR_010363) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SuicidO

Ontology of suicidology.

Proper citation: suicideo (RRID:SCR_010451) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/pseudo

Ontology for pseudogenes including biological feature, classified type, Evidence code, and subcellular origin.

Proper citation: Pseudogene (RRID:SCR_010453) Copy   

•   Source: SciCrunch Registry

https://bioportal.bioontology.org/ontologies/TEDDY?p=classes&conceptid=http%3A%2F%2Fidentifiers.org%2Fteddy%2FTEDDY_0000000

Ontology for dynamical behaviors, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.

Proper citation: Terminology for the Description of Dynamics (RRID:SCR_010454) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GRO

Ontology that is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes. GRO is intended to represent common knowledge about gene regulation in a formal way rather than representing extremely fine-grained classes as can be found in ontologies such as the Gene Ontology (GO) (created for data base annotation purposes) and various relevant databases. The main purpose of the ontology is to support NLP applications. It has a particular focus on the relations between processes and the molecules (participants) involved. The basic structure of the GRO is a direct acyclic graph (DAG) with ontology classes as nodes and is-a relations between classes as edges. The taxonomic backbone is further enriched by several semantic relation types (part-of, from-species, participates-in with the two sub-relations agent-of and patient-of).

Proper citation: Gene Regulation Ontology (RRID:SCR_010590) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CAO

Ontology designed for supporting the COG enrichment study by using Fisher''s exact test

Proper citation: Clusters of Orthologous Groups Analysis Ontology (RRID:SCR_007232) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/DERMO

Ontology of human dermatologic disease

Proper citation: Human Dermatological Disease Ontology (RRID:SCR_007648) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/HPIO

Ontology for host pathogen interactions in farmed animals

Proper citation: Host Pathogen Interactions Ontology (RRID:SCR_007647) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/BSPO

A small ontology for anatomical spatial references, such as dorsal, ventral, axis, and so forth.

Proper citation: Spatial Ontology (RRID:SCR_007860) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/mental-functioning-ontology/

An ontology for mental functioning, including mental processes such as cognition and traits such as intelligence, and related diseases and disorders. It is developed in the context of the Ontology for General Medical Science and the Basic Formal Ontology. The project is being developed in collaboration between the University of Geneva, Switzerland, and the University at Buffalo, USA. The project is being developed with full involvement of all relevant communities, following best practices laid out by the OBO Foundry. Efforts are currently underway to align with related projects including the Behaviour Ontology, the Cognitive Atlas, the Cognitive Paradigm Ontology and the Neural Electro Magnetic Ontologies.

Proper citation: Mental Functioning Ontology (RRID:SCR_003245) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/emotion-ontology/

An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings, designed to support interdisciplinary research by providing unified annotations. The ontology is a domain specialization of the broader Mental Functioning Ontology.

Proper citation: Emotion Ontology (RRID:SCR_003272) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/XCO

An ontology designed to represent the conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.

Proper citation: Experimental Conditions Ontology (RRID:SCR_003306) Copy   

•   Source: SciCrunch Registry