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http://www.uwa.edu.au/

Public research university in the Australian state of Western Australia. The university's main campus is in Perth, the state capital, with a secondary campus in Albany and various other facilities elsewhere.

Proper citation: University of Western Australia; Perth; Australia (RRID:SCR_012342) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ngopt/

Software that produces high quality microbial genome assemblies on a laptop computer without any parameter tuning. A5-miseq does this by automating the process of adapter trimming, quality filtering, error correction, contig and scaffold generation, and detection of misassemblies. Unlike the original A5 pipeline, A5-miseq can use long reads from the Illumina MiSeq, use read pairing information during contig generation, and includes several improvements to read trimming.

Proper citation: A5-miseq (RRID:SCR_012148) Copy   

•   Source: SciCrunch Registry

http://www.iitcinc.com/Plantar.html

The IITC Plantar Analgesia Meter for thermal paw can be used on 12 mice, 6 rats and other animals (cats, rabbits) unrestrained when testing for narcotic drugs. Experiments are easy to perform, simply slide the test head under test subject, align the heat source via our exclusive guide light (idle state) by the attached, adjustable, angled mirror on test head to test subject and perform tests.

Proper citation: IITC Life Sciences: Plantar Test Apparatus (RRID:SCR_012152) Copy   

•   Source: SciCrunch Registry

http://www.niehs.nih.gov/research/supported/srp/funding/index.cfm

http://www.niehs.nih.gov/research/supported/srp/funding/index.cfm

Proper citation: Superfund basic research program (RRID:SCR_012313) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/ec2kegg/

A perl-based package to perform comparative analysis of metabolic pathways between two organisms.

Proper citation: EC2KEGG (RRID:SCR_012127) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/cnvcapseq/

Software for accurate and sensitive CNV discovery and genotyping in long-range targeted resequencing.

Proper citation: cnvCapSeq (RRID:SCR_012126) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/plek/

An alignment-free software tool which uses a computational pipeline based on an improved k-mer scheme and a support vector machine (SVM) algorithm to distinguish lncRNAs from messenger RNAs (mRNAs), in the absence of genomic sequences or annotations. It is especially suitable for PacBio or 454 sequencing data and large-scale transcriptome data.

Proper citation: PLEK (RRID:SCR_012132) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/reditools/

A suite of python scripts to perform high-throughput investigation of RNA editing using next-generation sequencing data.

Proper citation: REDItools (RRID:SCR_012133) Copy   

•   Source: SciCrunch Registry

http://pprospector.sourceforge.net/

A pipeline of software programs to design and analyze PCR primers. It is built in Python using the open-source PyCogent toolkit.

Proper citation: PrimerProspector (RRID:SCR_012136) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/icelogo/

Software that builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the studied system and the used protocol.

Proper citation: iceLogo (RRID:SCR_012137) Copy   

•   Source: SciCrunch Registry

http://musite.sourceforge.net/

A Java-based standalone application for predicting both general and kinase-specific protein phosphorylation sites.

Proper citation: Musite (RRID:SCR_012141) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/pronovus-bioscience-llc

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 25,2024.

Proper citation: ProNovus Bioscience LLC (RRID:SCR_012266) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/hlaforest/

Software that predicts HLA haplotype by hierarchically weighting reads and using an iterative, greedy, top down pruning technique. HLAforest uses BioPerl to read in FASTA files. Alignments use Bow tie, although any alignment tool can be used to generate SAM alignments for use as input to HLAforest.

Proper citation: HLAforest (RRID:SCR_012146) Copy   

•   Source: SciCrunch Registry

https://www.creative-biolabs.com/home.htm

Biotechnology company specializing in developing and production of antibodies and service provider for customized products and relevant services. Committed to changing traditional antibody model and establishing new service platform. Specialized in providing custom biotechnology and pharmaceutical services that cover full scope of biotechnology needs of early drug discovery and drug development.

Proper citation: Creative Biolabs (RRID:SCR_012557) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/2.12/bioc/html/DNAcopy.html

Software that segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number.

Proper citation: DNAcopy (RRID:SCR_012560) Copy   

•   Source: SciCrunch Registry

http://autodock.scripps.edu/

Software suite of automated docking tools. Designed to predict how small molecules, such as substrates or drug candidates, bind to receptor of known 3D structure. AutoDock consist of AutoDock 4 and AutoDock Vina. AutoDock 4 consists of autodock to perform docking of ligand to set of grids describing target protein, and autogrid to pre calculate these grids.

Proper citation: AutoDock (RRID:SCR_012746) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/ExiMiR.html

R functions for the normalization of Exiqon miRNA array data.

Proper citation: ExiMiR (RRID:SCR_012753) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/cnv/

Software for a web-enabled platform for analyzing genome variation such as copy number variation (CNV).

Proper citation: CNV Workshop (RRID:SCR_012635) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/motifRG.html

Software tools for discriminative motif discovery using regression methods.

Proper citation: motifRG (RRID:SCR_012602) Copy   

•   Source: SciCrunch Registry

http://www.aan.com/

An international professional association of 24,000 neurologists and neuroscience professionals dedicated to promoting the highest quality patient-centered neurologic care. They provide guidance and inspiration through education, information, policy development and advocacy for our members and their patients. The Academy''s professional website is only one of the domains associated with the AAN: * TheBrainMatters.org, public & patient education website * m.AAN.com, mobile AAN.com for members * Neurology journal * Neurology Now, patient magazine * Neurology Today, magazine for neurology professionals The AAN is committed to bringing its members the highest quality continuing medical education and professional education opportunities. The Academy''s Education programs cover the spectrum of neurological disorders, from the most prevalent to newly emerging issues. The AAN also provides a wide range of program formats, including in-depth print, convenient online, and hands-on workshop options. The AAN Annual Meeting brings together more than 10,000 neuroscience professionals for one of the world''s largest neurology gatherings. It has long been a leading showcase for the latest developments in scientific research, and the place to honor peers at the forefront of the work. The AAN offers a variety of publications, news, blogs, jobs, and practice guidelines.

Proper citation: American Academy of Neurology (RRID:SCR_012739) Copy   

•   Source: SciCrunch Registry