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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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gFACs Resource Report Resource Website 1+ mentions |
gFACs (RRID:SCR_022017) | software resource, software application, data processing software | Software package provides comprehensive framework for evaluating, filtering, and analyzing gene models from range of input applications and preparing these annotations for formal publication or downstream analysis. | filtering, analysis, conversion, unify genome annotations, alignment and gene prediction frameworks, | National Science Foundation Plant Genome Research Program of the United States 1444573 | DOI:10.1016/j.gpb.2019.04.002 | Free, Available for download, Freely available | SCR_022017 | 2026-08-03 09:37:45 | 5 | |||||||||
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RNA STRAND-The RNA secondary STRucture and statistical ANalysis Database Resource Report Resource Website |
RNA STRAND-The RNA secondary STRucture and statistical ANalysis Database (RRID:SCR_000086) | RNA STRAND | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A scientific community-crowdsourced database containing the RNA secondary structures of known types and organisms. It is meant to provide a simple and powerful way to analyze, search and update a shared repository of information. | database, rna, analysis, scientific community, resource | has parent organization: University of British Columbia; British Columbia; Canada | PMID:18700982 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03415 | SCR_000086 | RNA secondary STRucture and statistical ANalysis Database | 2026-08-03 09:30:57 | 0 | ||||||
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Sumatra Resource Report Resource Website 10+ mentions |
Sumatra (RRID:SCR_001381) | electronic laboratory notebook, software resource, software application | A software tool for managing and tracking projects based on numerical simulation or analysis to support reproducible research. It can be thought of as an automated electronic lab notebook for simulation/analysis projects. Sumatra consists of: a command-line interface, smt, for launching simulations/analyses with automatic recording of information about the context, annotating these records, linking to data files, etc.; a web interface with a built-in web-server, smtweb, for browsing and annotating simulation/analysis results; a LaTeX package and Sphinx extension for including Sumatra-tracked figures and links to provenance information in papers and other documents; and a Python API, on which smt and smtweb are based, that can be used in personalized scripts in place of using smt. | simulation, analysis, python, numerical simulation, manage, track |
uses: Python Programming Language is listed by: INCF Software Center has parent organization: NeuralEnsemble |
Free, Freely Available | nlx_152549 | SCR_001381 | Sumatra: automated tracking of scientific computations | 2026-08-03 09:31:18 | 27 | ||||||||
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ROIs selection with a non-graphical user interface Resource Report Resource Website 1+ mentions |
ROIs selection with a non-graphical user interface (RRID:SCR_016352) | data access protocol, software resource, application programming interface | It is non-graphical user interface in MATLAB which relies on keyboard callback functions. Used for analyzing big data sets. | non graphical, user, interface, keyboard, callback, function, analysis, big, data, set | is related to: MATLAB | Free, Available for download, Freely available | https://ptrrupprecht.wordpress.com/2015/06/24/a-simple-non-graphical-user-interface-in-matlab-keyboard-callback-functions/ | SCR_016352 | 2026-08-03 09:36:44 | 2 | |||||||||
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Phenotypes and Mutant Alleles Resource Report Resource Website 10+ mentions |
Phenotypes and Mutant Alleles (RRID:SCR_017523) | service resource, data or information resource, database | Enables comparative phenotype analysis, searches for human disease models, and hypothesis generation by providing access to spontaneous, induced, and genetically engineered mutations and their strain-specific phenotypes. | MGI, phenotype, human, disease, analysis, model, genetically, engineered, mutation, strain, specific, phenotype, data | has parent organization: Mouse Genome Informatics (MGI) | Free, Freely available | SCR_017523 | Phenotypes, Alleles & Disease Models | 2026-08-03 09:36:52 | 11 | |||||||||
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C. elegans RNAi Collection (Ahringer) Resource Report Resource Website 10+ mentions |
C. elegans RNAi Collection (Ahringer) (RRID:SCR_017064) | data or information resource, database | C. elegans RNAi feeding library distributed by Source BioScience Ltd. Designed for genome wide study of gene function in C. elegans through loss of function studies. | Source BioScience Ltd, data, collection, bacterial, strain, Caenorhabditis elegans, RNA, interference, RNAi, gene, function, analysis, feeding, library | has parent organization: University of Cambridge; Cambridge; United Kingdom | Howard Hughes Medical Institute Predoctoral Fellow- ship ; Wellcome Trust Senior Research Fellowship |
PMID:12828945 | Available for purchase | SCR_017064 | 2026-08-03 09:36:31 | 14 | ||||||||
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University of Arkansas at Little Rock MidSouth Bioinformatics Center Core Facility Resource Report Resource Website |
University of Arkansas at Little Rock MidSouth Bioinformatics Center Core Facility (RRID:SCR_017168) | MidSouth Bioinformatics Center, MBC | service resource, access service resource, software resource, core facility | Core provides bioinformatics consulting, training, technical assistance, and access to computational infrastructure for faculty, students, and researchers in region with their bioscience computational needs. Offers private sessions, workshops and training on specialty topics. Computing resources including software, computing cluster, technical advice. | bioinformatics, assistance, consulting, training, analysis, omic, data | has parent organization: University of Arkansas; Arkansas; USA | Open | SCR_017168 | Bioinformatics Center, , University of Arkansas, UA, Core Facility, MBC, UALR, MidSouth, Little Rock | 2026-08-03 09:37:00 | 0 | ||||||||
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PlantGSEA Resource Report Resource Website 10+ mentions |
PlantGSEA (RRID:SCR_016866) | PlantGSEA | data analysis service, service resource, analysis service resource, production service resource | Websever for gene set enrichment analysis of plants. Used for interpreting biological meaning of a list of genes by computing the overlaps with various previously defined gene sets. | gene, set, enrichement, analysis, plant | Ministry of Science and Technology of China ; Ministry of Education of China |
DOI:10.1093/nar/gkt281 | SCR_016866 | The Plant GeneSet Enrichment Analysis Toolkit, Plant GeneSet Enrichment Analysis, Gene Set Enrichment Analysis (GSEA) | 2026-08-03 09:36:27 | 17 | ||||||||
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mqtldb Resource Report Resource Website 10+ mentions |
mqtldb (RRID:SCR_018002) | mqtldb | data or information resource, database | Data collection of large scale genome wide DNA methylation analysis of 1,000 mother-child pairs at serial time points across life course (ARIES). | Data, large scale, genome, DNA methylation, analysis, mother-child pair, serial time point, life course, aeries, methylation, quantitative trait loci, database | DOI:10.1186/s13059-016-0926-z | SCR_018002 | methylation quantitative trait loci database | 2026-08-03 09:36:50 | 36 | |||||||||
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Kidney Tissue Atlas Resource Report Resource Website 10+ mentions |
Kidney Tissue Atlas (RRID:SCR_021626) | data or information resource, atlas | Atlas is set of interactive tools built to promote retrieval, exploration, discovery, and analysis of Kidney Precision Medicine Project data by greater research community. Datasets available in repository are combination of raw and processed data from KPMP participant biopsies and reference tissue samples. | Interactive tools, retrieval, exploration, discovery, analysis, Kidney Precision Medicine Project data | is related to: Kidney Precision Medicine Project | Free, Freely available | SCR_021626 | 2026-08-03 09:37:35 | 23 | ||||||||||
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University of Salerno Laboratory of Molecular Medicine and Genomics Resource Report Resource Website |
University of Salerno Laboratory of Molecular Medicine and Genomics (RRID:SCR_011047) | UNISA LMMGe, UNISA, LMMGe, UNISA Laboratory of Molecular Medicine and Genomics, Laboratory of Molecular Medicine and Genomics | service resource, access service resource, core facility | Core equipped for structural and functional studies of genomes, includes equipment for next generation sequencing applications (Illumina HiSeq 1500, GAIIx and MiSeq, Life Technologies Ion Torrent PGM), RNA and microRNA expression profiling, array-based DNA methylation analyses and SNP genotyping (Illumina HiScan and Agilent High Resolution microarray scanners), informatics and bioinformatics (a server farm for genomics data computation and a high capacity data storage unit), fluorescence and confocal microscopy, long-term sample storage, cell culture, including a facility for generation and handling of viral vectors for gene transfer and gene therapy, access to a small animal facility for ''in vivo'' experimentations. Trained biotechnologists, molecular biologists and bioinformaticians handle all aspects related to experimental design, technical implementation and data analysis and storage. | genomes, sequencing, implementation, analysis, genotyping, cell culture, |
is listed by: ScienceExchange has parent organization: University of Salerno; Salerno; Italy |
Available to external user | SciEx_9722 | http://www.scienceexchange.com/facilities/laboratory-of-molecular-medicine-and-genomics | SCR_011047 | Laboratory of Molecular Medicine and Genomics, University of Salerno, UNISA, LMMGe | 2026-08-03 09:34:55 | 0 | ||||||
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Georgia Genomics and Bioinformatics Core at the University of Georgia Resource Report Resource Website 50+ mentions |
Georgia Genomics and Bioinformatics Core at the University of Georgia (RRID:SCR_010994) | GGBC | training service resource, service resource, access service resource, core facility | Core laboratory for nucleic acid sequencing and bioinformatics. Used for research support, education, and training. Services include genomic techniques and applications, sequencing technologies, and bioinformatics analyses, writting letters of support for grant applications submitted to funding agencies. GGBC operates multiple platforms for short-, long-, and single-molecule sequencing reads (i.e., Illumina MiSeq and NextSeq, PacBio Sequel, and Oxford Nanopore MinIon). | nucleic, acid, sequencing, labs, analysis, equipment, genomic, technique, analysis, grant, application |
is listed by: ScienceExchange is related to: University of Georgia Labs and Facilities has parent organization: University of Georgia; Georgia; USA |
SciEx_9234 | http://www.scienceexchange.com/facilities/georgia-genomics-facility-uga, http://www.scienceexchange.com/facilities/georgia-genomics-facility-uga | SCR_010994 | Georgia Genomics & Bioinformatics Core, Georgia Genomics and Bioinformatics Core at UGA, University of Georgia Genomics Facility, Georgia Genomics and Bioinformatics Core | 2026-08-03 09:34:50 | 71 | |||||||
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University of Southern California School of Pharmacy Translational Research Laboratory Resource Report Resource Website |
University of Southern California School of Pharmacy Translational Research Laboratory (RRID:SCR_012253) | USC, School of Pharmacy, TRLab, Translational Research Lab, University of Southern California, School of Pharmacy | service resource, access service resource, core facility | Core is equipped with a wide variety of technologically advanced instruments essential for cutting edge biomedical discovery and therapeutic development research. TRLab is composed of two major units. The Computational Bioinformatics Unit houses graphic workstations and modeling programs that enable in silico virtual screening and rational drug design applications. The Therapeutic Screening Unit houses a number of specialized instruments that enable a broad range of automated and multiplexed biological analyses in a throughput manner. The core mission of the TRLab has been to provide investigators with a state-of-the-art technological platform and technical expertise to advance translational research endeavors in the School of Pharmacy and at USC. | immunobiology, Molecular biology, analysis, imaging, |
is listed by: ScienceExchange has parent organization: University of Southern California; Los Angeles; USA |
Available to external user | SciEx_11044 | http://www.scienceexchange.com/facilities/the-translational-research-laboratory | SCR_012253 | USC, Translational Research Lab, Translational Research Laboratory, TRLab, University of Southern California, School of Pharmacy | 2026-08-03 09:34:50 | 0 | ||||||
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Vancouver Prostate Centre Laboratory for Advanced Genome Analysis Resource Report Resource Website 1+ mentions |
Vancouver Prostate Centre Laboratory for Advanced Genome Analysis (RRID:SCR_012394) | VPC LAGA, LAGA | service resource, access service resource, core facility | Core offers sequencing and microarray services, solutions for the profiling of FFPE tissues, and complete, project-tailored downstream bioinformatics analysis. The core's structure enables the management of research projects from experimental design to analysis and interpretation of data as well as support for grant applications and publications. The LAGA provides open fee-for-service access as a core facility (intra-institutional services to its researchers) and as regional, national and international facility (inter-institutional services). | Microarray, Profiling of FFPE, Analysis |
is listed by: ScienceExchange is related to: Vancouver Prostate Centre Labs and Facilities has parent organization: University of British Columbia; British Columbia; Canada |
Available to external user | SciEx_13 | https://www.prostatecentre.com/our-research/core-facilities/LAGA | https://www.scienceexchange.com/labs/laboratory-for-advanced-genome-analysis | SCR_012394 | , Laboratory for Advanced Genome Analysis, PC-TRiADD, VPC | 2026-08-03 09:34:53 | 1 | |||||
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University of Southern California Epigenome Center Data Production Facility Resource Report Resource Website |
University of Southern California Epigenome Center Data Production Facility (RRID:SCR_012476) | USC Epigenome Center, | service resource, access service resource, core facility | Core conducts genome-scale epigenetic and genetic data production and analysis, technology development, and epigenomic and population-based genomic research. | genome-scale epigenetic, genetic data production, analysis, technology development, epigenomic, population-based genomic research |
is listed by: ScienceExchange is related to: University of Southern California Labs and Facilities has parent organization: University of Southern California; Los Angeles; USA |
Available to external user | SciEx_206 | SCR_012476 | University of Southern California Epigenome Center Data Production Facility | 2026-08-03 09:35:00 | 0 | |||||||
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JP Sulzberger Columbia Genome Center Resource Report Resource Website 1+ mentions |
JP Sulzberger Columbia Genome Center (RRID:SCR_012650) | Columbia Genome Center | service resource, access service resource, core facility | Core sells sequencing data and bioinformatic analytics services to the scientific community. Core aims to permit the development of research on sequencing protocols and encourage collaboration with clinicians to develop the next generation genomic DNA testing. | analysis, sequencing, screening |
is listed by: ScienceExchange is related to: Columbia University Labs and Facilities has parent organization: Columbia University; New York; USA |
Available to external user | SciEx_608 | http://www.scienceexchange.com/facilities/columbia-genome-center-columbia | SCR_012650 | Columbia University Genome Center | 2026-08-03 09:35:12 | 1 | ||||||
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Emory Epithelial Pathobiology Research Development Center Image Analysis Core Resource Report Resource Website |
Emory Epithelial Pathobiology Research Development Center Image Analysis Core (RRID:SCR_015909) | service resource, access service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th,2023. Core facility for the Emory Epithelial Pathobiology Research Development Center. | epithelial, pathobiology, research, development, image, analysis | is organization facet of: Emory Epithelial Pathobiology Research Development Center | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015909 | 2026-08-03 09:36:10 | 0 | ||||||||||
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Rhode Island INBRE Molecular Informatics Core Facility Resource Report Resource Website 10+ mentions |
Rhode Island INBRE Molecular Informatics Core Facility (RRID:SCR_017685) | service resource, access service resource, core facility | Core provides sequencing and bioinformatics support for INBRE and non-INBRE researchers. Provides data science services adjacent to traditional bioinformatics; access to computational and software resources for INBRE network institutions, particularly primarily undergraduate institutions; training for students and faculty in data science methods. Maintains professional network with other core and user facilities in Rhode Island and beyond to maximize resources available to our users.Utilizes novel technologies such as virtual/augmented reality for use in teaching and research. | Analysis, interpretation, nucleotide, amino acid, sequence, protein, domain, structure, service, 3D visualization, modeling, USEDit |
has parent organization: University of Rhode Island; Rhode Island; USA has parent organization: USEDit |
NIGMS P20 GM103430 | Open | ABRF_3 | SCR_017685 | Rhode Island INBRE Molecular Informatics, RI-INBRE Bioinformatics Core; RI Genomics and Sequencing Center | 2026-08-03 09:37:06 | 12 | |||||||
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Connecticut University Health Center Flow Cytometry Core Facility Resource Report Resource Website |
Connecticut University Health Center Flow Cytometry Core Facility (RRID:SCR_017698) | service resource, access service resource, core facility | Facility provides flow cytometric analysis and cell sorting services. Located on 6th floor of E building in room E6014, consists of lab space, complete with fume hood, centrifuge, and sink space and has instruments available for cellular analysis and cell sorters. | Flow, cytometry, analysis, cell, sorting, serivce, UConn, core | Open | ABRF_125, SCR_017717 | SCR_017698 | UConn Health Flow Cytometry Core | 2026-08-03 09:36:54 | 0 | |||||||||
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University of Texas MD Anderson Cancer Center Proteomics Core Facility Resource Report Resource Website |
University of Texas MD Anderson Cancer Center Proteomics Core Facility (RRID:SCR_017731) | service resource, access service resource, core facility | Facility provides mass spectrometry analysis of proteins. Provides access to mass spectrometry based proteomics technologies and services including Protein Identification, Molecular Weight Determination, Quantitative Protein Analysis, Post-translational Modification Analysis, LC or LC-MS Analysis, Equipment Usage, Additional Data Analysis:Bioinformatics, statistics, pathway analysis and Assistance preparing materials for manuscripts or grants.Consultations for custom assays for other MS Services are also available. | Mass, spectrometry, analysis, protein, proteomics, service | NCI P30 CA016672; NIH Office of the Director S10 OD012304 |
Open | ABRF_186 | SCR_017731 | Proteomics Facility | 2026-08-03 09:36:43 | 0 |
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