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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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OpticalMapping.info Resource Report Resource Website |
OpticalMapping.info (RRID:SCR_017146) | data or information resource, portal, software resource, topical portal | Platform to provide tutorials and resources in experimental design and data analysis to researchers interested in using optical mapping data. | platform, tutorial, experimental, design, data, analysis, optical, mapping, structural, labelling, pattern, long, DNA, molecule, fluorescent, signal, capture | Free, Freely available | SCR_017146 | 2026-09-12 01:00:20 | 0 | |||||||||||
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factoextra Resource Report Resource Website 100+ mentions |
factoextra (RRID:SCR_016692) | data analysis software, data processing software, data visualization software, software application, software resource | R package from CRAN to extract and visualize the results of multivariate data analysis. | extract, visualize, multivariate, data, analysis |
is affiliated with: R Project for Statistical Computing is affiliated with: CRAN |
Free, Available for download, Freely available | https://rpkgs.datanovia.com/factoextra/index.html | SCR_016692 | 2026-09-12 01:00:19 | 117 | |||||||||
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NiMARE Resource Report Resource Website 10+ mentions |
NiMARE (RRID:SCR_017398) | NiMARE | data analysis software, data processing software, software application, software resource | Software Python package for coordinate and image based meta analysis of neuroimaging data. | Coordinate, image, based, meta, analysis, neuroimaging, data |
uses: PyMARE is used by: Neurosynth Compose |
Free, Available for download, Freely available | https://nimare.readthedocs.io/en/latest/ | SCR_017398 | Neuroimaging Meta Analysis Research Environment, Neuroimaging Meta-Analysis Research Environment | 2026-09-12 01:00:20 | 17 | |||||||
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NONMEM Resource Report Resource Website 10+ mentions |
NONMEM (RRID:SCR_016986) | Nonmem | data analysis software, data processing software, simulation software, software application, software resource | Software tool for nonlinear mixed effects modelling. Used for population pharmacokinetic and pharmacodynamic analysis and to simulate data and to fit data. Used in the development of new drugs. NONMEM versions up through 6 are the property of the Regents of the University of California, San Francisco, but ICON Development Solutions has exclusive rights to license their use. NONMEM 7 up to the current version is the property of ICON Development Solutions. | nonlinear, mixed, effect, modeling, pharmacokinetic, pharmacodynamic, analysis, data | is listed by: SoftCite | Commercially available | SCR_016986 | NONMEM 7.4, NONMEM 7, Nonlinear mixed effects modelling software, NONMEM 7.2, NONlinear Mixed Effects Modeling software, population analysis | 2026-09-12 01:00:19 | 45 | ||||||||
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Deltagraph Resource Report Resource Website |
Deltagraph (RRID:SCR_018084) | data analysis software, data analytics software, data processing software, data visualization software, software application, software resource | Software tool for statistics and data visualization by Red Rock Software, Inc. Provides unparalleled chart selection, data analysis and graph customization capabilities. | Data, statistic, visualization, chart selection, graph, analysis, Red Rock Software Inc. | Restricted | SCR_018084 | 2026-09-12 01:00:20 | 0 | |||||||||||
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Computational Structural Biology Toolbox Resource Report Resource Website |
Computational Structural Biology Toolbox (RRID:SCR_016065) | CSB | software library, software resource, software toolkit | Software package as an application framework and a Python class library. It is designed for reading, storing and analyzing biomolecular structures in a variety of formats with rich support for statistical analyses. | software, library, Python, reading, storing, analysis, biomolecular, variety, statistical, analysis, bioinformatic |
is listed by: Debian is listed by: OMICtools |
Deutsche Forschungsgemeinschaft (DFG) grant HA 5918/1-1; Max Planck Society |
PMID:22942023 | Free, Available for download | OMICS_09827 | https://sources.debian.org/src/csb/ | SCR_016065 | Computational Structural Biology Toolbox (CSB), CSB Toolbox | 2026-09-12 01:00:18 | 0 | ||||
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Seurat Resource Report Resource Website 10000+ mentions |
Seurat (RRID:SCR_016341) | data analysis software, data processing software, software application, software resource, software toolkit | Software R package designed for QC, analysis, and exploration of single cell RNA-seq data. Enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. Used for quality control, analysis, and exploration of single-cell RNA sequencing (scRNA-seq) data. | single, cell, genomic, RNA-seq, data, QC, analysis, source, heterogeneity, transcriptomic, measurement, integrate, diverse |
is used by: Stardust is used by: Seurat MapQuery is used by: scSidekick is related to: DoubletFinder is related to: Azimuth works with: SeuratWrappers works with: Connectome |
NHGRI 1DP2HG009623; NIMH 5R01MH071679; NSF |
PMID:29608179 | Free, Available for download, Freely available | https://satijalab.org/seurat/get_started.html | SCR_016341 | 2026-09-12 01:00:18 | 11480 | |||||||
|
IMGT HighV-QUEST Resource Report Resource Website 10+ mentions |
IMGT HighV-QUEST (RRID:SCR_018196) | alignment software, analysis service resource, data or information resource, data processing software, image analysis software, portal, production service resource, service resource, software application, software resource | Next generation B and T cell sequence alignment and characterization online surface by IMGT. Web portal for immunoglobulin (IG) or antibody and T cell receptor (TR) analysis from NGS high throughput and deep sequencing. | Next generation sequencing, B cell, T cell, sequence alignment, immunoglobulin, antibody, T cell receptor, analysis, sequence, bio.tools |
is listed by: bio.tools is listed by: Debian |
CNRS ; GENCI ; MESR ; NHMRC ; Université Montpellier 2 ; France |
PMID:22647994 PMID:23995877 PMID:22665256 |
Restricted | biotools:IMGt_HighV-QUESt | https://bio.tools/IMGT_HighV-QUEST | SCR_018196 | IMGT/HighV QUEST, IMGT/HighV-QUEST, IMGT web portal | 2026-09-12 01:00:21 | 15 | |||||
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Montana State University Bioinformatics Core Facility Resource Report Resource Website |
Montana State University Bioinformatics Core Facility (RRID:SCR_009937) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27, 2023. Core for Microarray analysis, Database development, Systems biology analysis, Genome assembly, Pathway data analysis, Expression data analysis, Metagenomics analysis. To maintain equipment and software for bioinformatic research, promote bioinformatics education on the MSU campus, and provide training and support to biologists implementing bioinformatics tools in their research. | nucleic, acid, microarray, assay, database, development, analysis, genome, assembly, pathway, data, gene, expression, metagenomics |
is listed by: Eagle I has parent organization: Montana State University |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156405 | http://cores.montana.edu/bioinformatics/ | SCR_009937 | , Montana State University, core facility, MSU, Bioinformatics Core Laboratory | 2026-09-12 01:03:24 | 0 | |||||||
|
University of Salerno Laboratory of Molecular Medicine and Genomics Resource Report Resource Website |
University of Salerno Laboratory of Molecular Medicine and Genomics (RRID:SCR_011047) | UNISA LMMGe, UNISA, LMMGe, UNISA Laboratory of Molecular Medicine and Genomics, Laboratory of Molecular Medicine and Genomics | access service resource, core facility, service resource | Core equipped for structural and functional studies of genomes, includes equipment for next generation sequencing applications (Illumina HiSeq 1500, GAIIx and MiSeq, Life Technologies Ion Torrent PGM), RNA and microRNA expression profiling, array-based DNA methylation analyses and SNP genotyping (Illumina HiScan and Agilent High Resolution microarray scanners), informatics and bioinformatics (a server farm for genomics data computation and a high capacity data storage unit), fluorescence and confocal microscopy, long-term sample storage, cell culture, including a facility for generation and handling of viral vectors for gene transfer and gene therapy, access to a small animal facility for ''in vivo'' experimentations. Trained biotechnologists, molecular biologists and bioinformaticians handle all aspects related to experimental design, technical implementation and data analysis and storage. | genomes, sequencing, implementation, analysis, genotyping, cell culture, |
is listed by: ScienceExchange has parent organization: University of Salerno; Salerno; Italy |
Available to external user | SciEx_9722 | http://www.scienceexchange.com/facilities/laboratory-of-molecular-medicine-and-genomics | SCR_011047 | Laboratory of Molecular Medicine and Genomics, University of Salerno, UNISA, LMMGe | 2026-09-12 01:03:32 | 0 | ||||||
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Georgia Genomics and Bioinformatics Core at the University of Georgia Resource Report Resource Website 50+ mentions |
Georgia Genomics and Bioinformatics Core at the University of Georgia (RRID:SCR_010994) | GGBC | access service resource, core facility, service resource, training service resource | Core laboratory for nucleic acid sequencing and bioinformatics. Used for research support, education, and training. Services include genomic techniques and applications, sequencing technologies, and bioinformatics analyses, writting letters of support for grant applications submitted to funding agencies. GGBC operates multiple platforms for short-, long-, and single-molecule sequencing reads (i.e., Illumina MiSeq and NextSeq, PacBio Sequel, and Oxford Nanopore MinIon). | nucleic, acid, sequencing, labs, analysis, equipment, genomic, technique, analysis, grant, application |
is listed by: ScienceExchange is related to: University of Georgia Labs and Facilities has parent organization: University of Georgia; Georgia; USA |
SciEx_9234 | http://www.scienceexchange.com/facilities/georgia-genomics-facility-uga, http://www.scienceexchange.com/facilities/georgia-genomics-facility-uga | SCR_010994 | Georgia Genomics & Bioinformatics Core, Georgia Genomics and Bioinformatics Core at UGA, University of Georgia Genomics Facility, Georgia Genomics and Bioinformatics Core | 2026-09-12 01:03:31 | 75 | |||||||
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University of Southern California School of Pharmacy Translational Research Laboratory Resource Report Resource Website |
University of Southern California School of Pharmacy Translational Research Laboratory (RRID:SCR_012253) | USC, School of Pharmacy, TRLab, Translational Research Lab, University of Southern California, School of Pharmacy | access service resource, core facility, service resource | Core is equipped with a wide variety of technologically advanced instruments essential for cutting edge biomedical discovery and therapeutic development research. TRLab is composed of two major units. The Computational Bioinformatics Unit houses graphic workstations and modeling programs that enable in silico virtual screening and rational drug design applications. The Therapeutic Screening Unit houses a number of specialized instruments that enable a broad range of automated and multiplexed biological analyses in a throughput manner. The core mission of the TRLab has been to provide investigators with a state-of-the-art technological platform and technical expertise to advance translational research endeavors in the School of Pharmacy and at USC. | immunobiology, Molecular biology, analysis, imaging, |
is listed by: ScienceExchange has parent organization: University of Southern California; Los Angeles; USA |
Available to external user | SciEx_11044 | http://www.scienceexchange.com/facilities/the-translational-research-laboratory | SCR_012253 | USC, Translational Research Lab, Translational Research Laboratory, TRLab, University of Southern California, School of Pharmacy | 2026-09-12 01:03:39 | 0 | ||||||
|
University of Southern California Epigenome Center Data Production Facility Resource Report Resource Website |
University of Southern California Epigenome Center Data Production Facility (RRID:SCR_012476) | USC Epigenome Center, | access service resource, core facility, service resource | Core conducts genome-scale epigenetic and genetic data production and analysis, technology development, and epigenomic and population-based genomic research. | genome-scale epigenetic, genetic data production, analysis, technology development, epigenomic, population-based genomic research |
is listed by: ScienceExchange is related to: University of Southern California Labs and Facilities has parent organization: University of Southern California; Los Angeles; USA |
Available to external user | SciEx_206 | SCR_012476 | University of Southern California Epigenome Center Data Production Facility | 2026-09-12 01:03:42 | 0 | |||||||
|
Vancouver Prostate Centre Laboratory for Advanced Genome Analysis Resource Report Resource Website 1+ mentions |
Vancouver Prostate Centre Laboratory for Advanced Genome Analysis (RRID:SCR_012394) | VPC LAGA, LAGA | access service resource, core facility, service resource | Core offers sequencing and microarray services, solutions for the profiling of FFPE tissues, and complete, project-tailored downstream bioinformatics analysis. The core's structure enables the management of research projects from experimental design to analysis and interpretation of data as well as support for grant applications and publications. The LAGA provides open fee-for-service access as a core facility (intra-institutional services to its researchers) and as regional, national and international facility (inter-institutional services). | Microarray, Profiling of FFPE, Analysis |
is listed by: ScienceExchange is related to: Vancouver Prostate Centre Labs and Facilities has parent organization: University of British Columbia; British Columbia; Canada |
Available to external user | SciEx_13 | https://www.prostatecentre.com/our-research/core-facilities/LAGA | https://www.scienceexchange.com/labs/laboratory-for-advanced-genome-analysis | SCR_012394 | , Laboratory for Advanced Genome Analysis, PC-TRiADD, VPC | 2026-09-12 01:03:41 | 1 | |||||
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JP Sulzberger Columbia Genome Center Resource Report Resource Website 1+ mentions |
JP Sulzberger Columbia Genome Center (RRID:SCR_012650) | Columbia Genome Center | access service resource, core facility, service resource | Core sells sequencing data and bioinformatic analytics services to the scientific community. Core aims to permit the development of research on sequencing protocols and encourage collaboration with clinicians to develop the next generation genomic DNA testing. | analysis, sequencing, screening |
is listed by: ScienceExchange is related to: Columbia University Labs and Facilities has parent organization: Columbia University; New York; USA |
Available to external user | SciEx_608 | http://www.scienceexchange.com/facilities/columbia-genome-center-columbia | SCR_012650 | Columbia University Genome Center | 2026-09-12 01:03:44 | 1 | ||||||
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Gamess Resource Report Resource Website 100+ mentions |
Gamess (RRID:SCR_014896) | software resource, source code | Software program for ab initio molecular quantum chemistry. GAMESS can compute SCF wavefunctions ranging from RHF, ROHF, UHF, GVB, and MCSCF. Capabilities include using nuclear gradients for automatic geometry optimization, modeling of solvent effects, computation of the energy hessian for prediction of vibrational frequencies, as well as computation of nuclear wavefunctions. The program can also compute variety of molecular properties, ranging from simple dipole moments to frequency dependent hyperpolarizabilities. | molecular quantum chemistry, molecular properties, computation, analysis, visualization | SCR_014896 | The General Atomic and Molecular Electronic Structure System | 2026-09-12 01:03:49 | 279 | |||||||||||
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Sanford Burnham Prebys Medical Discovery Institute Genomics DNA Analysis Facility Resource Report Resource Website |
Sanford Burnham Prebys Medical Discovery Institute Genomics DNA Analysis Facility (RRID:SCR_014866) | Genomics Core at SBP | instrument supplier, material resource | Core facility that provides sequencing services, access to equipment and consultation on experimental design and data analysis. Available instruments include the Life Technologies Ion Torrent PGM and Ion Proton sequencers. Core also provides amplification-free analysis of RNA expression using the NanoString nCounter, and additionally provides sequencing and analysis services to investigators outside of SBP. Included in the cost of sequencing is basic bioinformatic analysis (SNP/InDel calling, transcript abundance). Lastly, the core also provides advice on experimental design, and guidance on the capabilities of next-generation sequencing. | facility, la jolla, genomics, core, SBP, analysis, sequencing, rna, snp, consultation | Available to external user | SCR_014866 | SBP, DNA Analysis Facility, Genomics Core, Medical Discovery Institute | 2026-09-12 01:03:48 | 0 | |||||||||
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Sanford Burnham Prebys Medical Discovery Institute High-content Screening Core Facility Resource Report Resource Website |
Sanford Burnham Prebys Medical Discovery Institute High-content Screening Core Facility (RRID:SCR_014869) | HCS | instrument supplier, material resource | Core facility that provides access to the HTS plate and liquid handling infrastructure of the screening center, as well as the screening center�s cell culture facility. Other services include assay development, screening, and data analysis/mining expertise and services for high content screens. Consultation from the team is available for high content image-based screens including sample preparation, image acquisition, image analysis, image data management, and algorithm development. | facility, la jolla, high content screening, assay, phenotype, data mining, analysis, image analysis, development | Commercially available | SCR_014869 | SBP Medical Discovery Institute High-content Screening Core Facility, SBP High-content Screening Core Facility | 2026-09-12 01:03:48 | 0 | |||||||||
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Sanford Burnham Prebys Medical Discovery Institute Cheminformatics Core Resource Report Resource Website |
Sanford Burnham Prebys Medical Discovery Institute Cheminformatics Core (RRID:SCR_014875) | access service resource, core facility, service resource | Core facility that supports assay development, high throughput (HTS), ultra-high throughput (uHTS), and high-content screening (HCS) activities performed at the Conrad Prebys Center for Chemical Genomics by providing databases and tools for compound registration and inventory, HTS plate formatting and tracking, HTS and HCS bioassay data processing as well as related data and information handling. Data mining and reporting are also facilitated with a user-friendly database interface. The Cheminformatics core also supports the design and obtaining of appropriate compound collections, as well as SAR follow-up of hits, hit-to-lead optimization and in silico screening through docking and other molecular modeling approaches. | facility, la jolla, cheminformatics, analysis, assay, throughput, database | Commercially available | SCR_014875 | SBP Cheminformatics Core, SBP Medical Discovery Institute Cheminformatics Core | 2026-09-12 01:03:49 | 0 | ||||||||||
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Scripps Research Institute Florida Cell Based High Throughput Screening Core Facility Resource Report Resource Website |
Scripps Research Institute Florida Cell Based High Throughput Screening Core Facility (RRID:SCR_014877) | TSRI CBS | access service resource, core facility, service resource | Core facility that provides access to genome-wide collections of cDNAs and siRNAs that can be used to interrogate cellular models of signal transduction pathways and phenotypes. Services include cell lines, hit-picking clones and various screening sets, and access to equipment.Provides instruments:Analyst Molecular Devices,Embla Molecular Devices, Envision Perkin Elmer, Platemate Matrix, Tecan M200, Wellmate Matrix. | USEDit, ABRF, Cell, high, throughput, screening, genome, collection, cDNA, siRNA, cellular, model, signal, transduction, pathway, phenotype, analysis, service, core, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Scripps Research Institute |
SCR_017832, ABRF_618 | https://coremarketplace.org/?FacilityID=618 | SCR_014877 | The Scripps Research Institute (CBS) Core, The Scripps Research Institute Cell-Based Screening (CBS) Core, Scripps Research Institute Cell-Based Screening Core, Cell-Based High-Throughput Screening Core | 2026-09-12 01:03:49 | 0 |
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