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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Ontology for Genetic Disease Investigations Resource Report Resource Website |
Ontology for Genetic Disease Investigations (RRID:SCR_010385) | OGDI | data or information resource, controlled vocabulary, ontology | Ontology used to model the scientific investigation, especially Genome-Wide Association Study (GWAS), to find out genetic susceptibility factor to disease, such as Diabetes. It models the genetic varaints, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes, :Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism Disorder (OGMD) . | owl | is listed by: BioPortal | nlx_157516 | SCR_010385 | 2025-05-15 10:39:39 | 0 | |||||||||
|
Immune Disorder Ontology Resource Report Resource Website |
Immune Disorder Ontology (RRID:SCR_010344) | IMMDIS | data or information resource, controlled vocabulary, ontology | Ontology generated as part of the Bioinformatics Integration Support Contract (BISC) that is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases. Specific information may be available about a class, including Preferred_Name, DEFINITION, Synonym, etc. | obo, health, immunology | is listed by: BioPortal | NIAID ; Division of Allergy Immunology and Transplantation |
nlx_157438 | SCR_010344 | 2025-05-15 10:39:37 | 0 | ||||||||
|
InterNano Nanomanufacturing Taxonomy Resource Report Resource Website 1+ mentions |
InterNano Nanomanufacturing Taxonomy (RRID:SCR_010346) | InterNano | data or information resource, controlled vocabulary, ontology | A custom-built terminology to describe the nanomanufacturing enterprise. | owl | is listed by: BioPortal | NSF CMMI-1025020 | nlx_157442 | SCR_010346 | 2025-05-15 10:39:38 | 1 | ||||||||
|
Interaction Network Ontology Resource Report Resource Website 1+ mentions |
Interaction Network Ontology (RRID:SCR_010347) | INO | data or information resource, controlled vocabulary, ontology | An ontology in the domain of interaction network that aims to standardize interaction network annotation, integrate various interaction network data, and support computer-assisted reasoning. It is aimed to represent general interactions (e.g., molecular interactions) and interaction networks (e.g., Bayesian network). INO was initiated by supporting literature mining related to interactions and interaction networks. INO aligns with BFO. INO is a community-based ontology, and its development follows the OBO Foundry principles. | owl | is listed by: BioPortal | nlx_157443 | SCR_010347 | 2025-05-15 10:39:38 | 2 | |||||||||
|
International Classification of Diseases Version 10 Resource Report Resource Website 1+ mentions |
International Classification of Diseases Version 10 (RRID:SCR_010349) | ICD10 | data or information resource, controlled vocabulary, ontology | Ontology of the International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva, a medical classification list by the World Health Organization (WHO). | umls | is listed by: BioPortal | nlx_157448 | SCR_010349 | 2025-05-15 10:39:38 | 1 | |||||||||
|
International Classification of Diseases Version 10 - Procedure Coding System Resource Report Resource Website |
International Classification of Diseases Version 10 - Procedure Coding System (RRID:SCR_010351) | ICD10PCS | data or information resource, controlled vocabulary, ontology | Ontology of the International Classification of Diseases Version 10, ICD-10-PCS (Procedure Coding System), 2009. | umls | is listed by: BioPortal | nlx_157450 | SCR_010351 | 2025-05-15 10:39:38 | 0 | |||||||||
|
MR dataset acquisition Resource Report Resource Website |
MR dataset acquisition (RRID:SCR_010352) | ONL-MR-DA | data or information resource, controlled vocabulary, ontology | Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Magnetic Resonance Imaging (MRI) dataset acquisition, i.e. MRI protocols, and MRI sequence parameters, developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeneous resources in neuroimaging. In particular, it includes a multi-axial classification of MR sequences. | owl neuroimaging, mri, data acquisition, mri protocol, mri sequence parameter | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157461 | SCR_010352 | 2025-05-15 10:39:38 | 0 | ||||||||
|
Metagenome and Microbes Environmental Ontology Resource Report Resource Website |
Metagenome and Microbes Environmental Ontology (RRID:SCR_010359) | MEO | data or information resource, controlled vocabulary, ontology | Ontology for organismal habitats (especially focused on microbes) | owl | is listed by: BioPortal | nlx_157476 | SCR_010359 | 2025-05-15 10:39:38 | 0 | |||||||||
|
Minimal Information about any Sequence Controlled Vocabularies Resource Report Resource Website |
Minimal Information about any Sequence Controlled Vocabularies (RRID:SCR_010363) | MIXSCV | data or information resource, controlled vocabulary, ontology | Controlled vocabularies for the MIxS (Minimal Information about any Sequence) family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists. | obo | is listed by: BioPortal | nlx_157481 | SCR_010363 | Minimal Information about any Sequence (MIxS) Controlled Vocabularies, MIxS Controlled Vocabularies | 2025-05-15 10:39:38 | 0 | ||||||||
|
suicideo Resource Report Resource Website |
suicideo (RRID:SCR_010451) | SuicidO | data or information resource, controlled vocabulary, ontology | Ontology of suicidology. | owl | is listed by: BioPortal | nlx_157632 | SCR_010451 | 2025-05-15 10:39:42 | 0 | |||||||||
|
Pseudogene Resource Report Resource Website 100+ mentions |
Pseudogene (RRID:SCR_010453) | pseudo | data or information resource, controlled vocabulary, ontology | Ontology for pseudogenes including biological feature, classified type, Evidence code, and subcellular origin. | obo | is listed by: BioPortal | nlx_157640 | SCR_010453 | 2025-05-15 10:39:42 | 135 | |||||||||
|
Terminology for the Description of Dynamics Resource Report Resource Website 1+ mentions |
Terminology for the Description of Dynamics (RRID:SCR_010454) | TEDDY | data or information resource, controlled vocabulary, ontology | Ontology for dynamical behaviors, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology. | Ontology for dynamical behaviors, Systems Biology, Synthetic Biology, ontology, owl, dynamical behaviors, observable dynamical phenomena, control elements, bio-models and biological systems | is listed by: BioPortal | nlx_157641 | http://purl.bioontology.org/ontology/MO | SCR_010454 | 2025-05-15 10:39:42 | 7 | ||||||||
|
Gene Regulation Ontology Resource Report Resource Website |
Gene Regulation Ontology (RRID:SCR_010590) | GRO, BOOTStrep | data or information resource, controlled vocabulary, ontology | Ontology that is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes. GRO is intended to represent common knowledge about gene regulation in a formal way rather than representing extremely fine-grained classes as can be found in ontologies such as the Gene Ontology (GO) (created for data base annotation purposes) and various relevant databases. The main purpose of the ontology is to support NLP applications. It has a particular focus on the relations between processes and the molecules (participants) involved. The basic structure of the GRO is a direct acyclic graph (DAG) with ontology classes as nodes and is-a relations between classes as edges. The taxonomic backbone is further enriched by several semantic relation types (part-of, from-species, participates-in with the two sub-relations agent-of and patient-of). | owl, genomic, proteomic, biological process, gene regulation, gene expression, gene, transcription factor, process, molecule, biological_process |
is listed by: BioPortal is listed by: OBO has parent organization: European Bioinformatics Institute |
nlx_157415, nlx_46399 | http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO_latest |
SCR_010590 | Gene Regulation Ontology - Ontological resource from the BOOTStrep project for the representation of gene regulation events | 2025-05-15 10:39:45 | 0 | |||||||
|
Clusters of Orthologous Groups Analysis Ontology Resource Report Resource Website 1+ mentions |
Clusters of Orthologous Groups Analysis Ontology (RRID:SCR_007232) | CAO | data or information resource, controlled vocabulary, ontology | Ontology designed for supporting the COG enrichment study by using Fisher''s exact test | owl |
is listed by: BioPortal has parent organization: COG |
nlx_157366 | http://cao.sourceforge.net/ | SCR_007232 | COG Analysis Ontology, Clusters of Orthologous Groups (COG) Analysis Ontology | 2025-05-15 10:38:49 | 3 | |||||||
|
Human Dermatological Disease Ontology Resource Report Resource Website 1+ mentions |
Human Dermatological Disease Ontology (RRID:SCR_007648) | DERMO | data or information resource, controlled vocabulary, ontology | Ontology of human dermatologic disease | obo | is listed by: BioPortal | Dermatologic disease | nlx_157428 | SCR_007648 | 2025-05-15 10:38:58 | 1 | ||||||||
|
Host Pathogen Interactions Ontology Resource Report Resource Website |
Host Pathogen Interactions Ontology (RRID:SCR_007647) | HPIO | data or information resource, controlled vocabulary, ontology | Ontology for host pathogen interactions in farmed animals | owl | is listed by: BioPortal | nlx_157427 | SCR_007647 | 2025-05-15 10:38:58 | 0 | |||||||||
|
Spatial Ontology Resource Report Resource Website |
Spatial Ontology (RRID:SCR_007860) | BSPO | data or information resource, controlled vocabulary, ontology | A small ontology for anatomical spatial references, such as dorsal, ventral, axis, and so forth. | obo | is listed by: BioPortal | SCR_007860 | 2025-05-15 10:38:59 | 0 | ||||||||||
|
Mental Functioning Ontology Resource Report Resource Website 1+ mentions |
Mental Functioning Ontology (RRID:SCR_003245) | MF, MFO | data or information resource, controlled vocabulary, ontology | An ontology for mental functioning, including mental processes such as cognition and traits such as intelligence, and related diseases and disorders. It is developed in the context of the Ontology for General Medical Science and the Basic Formal Ontology. The project is being developed in collaboration between the University of Geneva, Switzerland, and the University at Buffalo, USA. The project is being developed with full involvement of all relevant communities, following best practices laid out by the OBO Foundry. Efforts are currently underway to align with related projects including the Behaviour Ontology, the Cognitive Atlas, the Cognitive Paradigm Ontology and the Neural Electro Magnetic Ontologies. | mental functioning, mental process, cognition, trait, psychology, neuroscience, owl |
is listed by: BioPortal is listed by: Google Code is listed by: OBO is related to: Information Artifact Ontology is related to: Emotion Ontology is related to: Emotion Ontology has parent organization: University at Buffalo; New York; USA |
GNU Lesser General Public License, (Code) | nlx_157305 | http://purl.obolibrary.org/obo/mf.owl | SCR_003245 | mental-functioning-ontology | 2025-05-15 10:37:02 | 1 | ||||||
|
Emotion Ontology Resource Report Resource Website |
Emotion Ontology (RRID:SCR_003272) | MFOEM | data or information resource, controlled vocabulary, ontology | An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings, designed to support interdisciplinary research by providing unified annotations. The ontology is a domain specialization of the broader Mental Functioning Ontology. | owl, affect, emotion, mood, appraisal, feeling, health, ontology |
is listed by: Google Code is listed by: OBO is listed by: BioPortal is related to: Mental Functioning Ontology is related to: Mental Functioning Ontology |
Apache License v2 | nlx_157396 | http://emotion-ontology.googlecode.com http://purl.bioontology.org/ontology/MFOEM http://purl.obolibrary.org/obo/mfoem.owl |
SCR_003272 | 2025-05-15 10:37:03 | 0 | |||||||
|
Experimental Conditions Ontology Resource Report Resource Website 1+ mentions |
Experimental Conditions Ontology (RRID:SCR_003306) | XCO | data or information resource, controlled vocabulary, ontology | An ontology designed to represent the conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms. | obo, clinical, physiology, morphology, measurement |
is listed by: BioPortal is listed by: OBO has parent organization: Medical College of Wisconsin; Wisconsin; USA |
PMID:22654893 | Academic Free License | nlx_157401 | ftp://rgd.mcw.edu/pub/ontology/experimental_condition/experimental_condition.obo http://sourceforge.net/projects/phenoonto/ |
SCR_003306 | Experimental condition ontology | 2025-05-15 10:37:04 | 1 |
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