Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
DeepSqueak project Resource Report Resource Website |
DeepSqueak project (RRID:SCR_021450) | data or information resource, portal, project portal | Project related to rodent social communication through repertoire of ultrasonic vocalizations. Provides deep learning based system for quantification of Ultrasonic Vocalizations.Includes software MATLAB package for high throughput USV detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak |
DOI:10.1038/s41386-018-0303-6 | Free, Freely available | SCR_021450 | SciCrunch Registry | DeepSqueak | 2026-11-07 12:01:47 | 0 | ||||||||
|
Camera Control project Resource Report Resource Website |
Camera Control project (RRID:SCR_021569) | data or information resource, portal, project portal, software resource | Portal provides Python based camera software GUI developed by Harvard University scientists. Open source software package that allows video to be recorded in sync with behavior. Python API to record video system timestamps from Imaging Source USB cameras. | Camera software, Python API, record video system timestamps, Imaging Source USB cameras, OpenBehavior |
is listed by: OpenBehavior is related to: Camera Control has parent organization: Harvard University; Cambridge; United States |
Free, Freely available | SCR_021569 | SciCrunch Registry | Camera Control | 2026-11-07 12:01:43 | 0 | |||||||||
|
Rigbox project Resource Report Resource Website |
Rigbox project (RRID:SCR_021444) | data or information resource, portal, project portal | Project related to streamlining behavioral neuroscience experiments.Provides open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. | Managing behavioral neuroscience experiments, running behavioral neuroscience experiments, managing data, acquiring experiment related data, OpenBehavior |
is listed by: OpenBehavior is related to: Rigbox |
DOI:10.1523/eneuro.0406-19.2020 | Free, Freely available | SCR_021444 | SciCrunch Registry | Rigbox | 2026-11-07 12:01:42 | 0 | ||||||||
|
Online Animal Tracker project Resource Report Resource Website |
Online Animal Tracker project (RRID:SCR_021386) | OAT | data or information resource, portal, project portal | Project related to processing video, extracting object position information, and streaming data.Provides set of programs for processing video for behavioral research. Includes OAT software tool as real time position tracker which was developed by Massachusetts Institute of Technology scientists. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Freely available | SCR_021386 | SciCrunch Registry | Online Animal Tracker | 2026-11-07 12:01:54 | 0 | ||||||||
|
Behavioral Segmentation of Open-field in DeepLabCut project Resource Report Resource Website |
Behavioral Segmentation of Open-field in DeepLabCut project (RRID:SCR_021410) | B-SOiD | data or information resource, portal, project portal | Project related to unsupervised behavior analysis.Carnegie Mellon University has shared B-SOiD, open source unsupervised algorithm for discovery of spontaneous behaviors. Includes software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users. | OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: Carnegie Mellon University; Pennsylvania; USA |
DOI:10.1101/770271 | Free, Freely available | SCR_021410 | SciCrunch Registry | B-SOiD v2.0, Behavioral Segmentation of Open-field in DeepLabCut | 2026-11-07 12:01:54 | 0 | |||||||
|
Simple Behavior Analysis project Resource Report Resource Website |
Simple Behavior Analysis project (RRID:SCR_021411) | data or information resource, portal, project portal | University of Washington project SimBA for analysis of complex social behaviors.Used for automated behavioral scoring. Includes open source software toolkit for computer classification of complex social behaviors in experimental animals. Uses data from popular open source tracking tools in combination with small amount of behavioral annotations to create supervised machine learning classifiers that can then rapidly and accurately score behaviors across different background settings and lighting conditions. | Complex social behaviors classifications, supervised behavioral classifiers development, score behaviors across different background settings, OpenBehavior |
is listed by: OpenBehavior is related to: Simple Behavior Analysis has parent organization: University of Washington; Seattle; USA |
DOI:10.1101/2020.04.19.049452 | Free, Freely available | SCR_021411 | SciCrunch Registry | Simple Behavior Analysis, SimBA | 2026-11-07 12:01:47 | 0 | ||||||||
|
ezTrack project Resource Report Resource Website |
ezTrack project (RRID:SCR_021418) | data or information resource, portal, project portal | Project related to behavior analysis.Mt.Sinai scientist developed open source video analysis pipeline for investigation of animal behavior.Used to track location, motion, and freezing of animal. | Track animal location, track motion, track animal freezing, OpenBehavior |
is listed by: OpenBehavior is related to: ezTrack has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
DOI:10.1038/s41598-019-56408-9 | Free, Freely available | SCR_021418 | SciCrunch Registry | ezTrack | 2026-11-07 12:01:42 | 0 | ||||||||
|
FreemoVR project Resource Report Resource Website 1+ mentions |
FreemoVR project (RRID:SCR_021551) | data or information resource, portal, project portal | Portal related to virtual reality for freely moving animals.Provides virtual reality system set up for unrestrained animals.System developed by University of Frieburg scientists. This Virtual Reality system can be used with number of different species including mice, zebrafish, and Drosophila. | Virtual reality system, unrestrained animals, behavior, brain function, OpenBehavior |
is listed by: OpenBehavior is related to: FreemoVR has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
DOI:10.1038/nmeth.4399 | Free, Freely available | SCR_021551 | SciCrunch Registry | FreemoVR | 2026-11-07 12:01:48 | 2 | ||||||||
|
DeepLabCut Project Resource Report Resource Website 50+ mentions |
DeepLabCut Project (RRID:SCR_021398) | data or information resource, portal, project portal | Project for markerless pose estimation of user defined body parts with deep learning. | OpenBehavior, animal pose estimation, markerless pose estimation, body parts, multi-animal pose estimation, B-SoID, Stytra, Kinemouse Wheel |
lists: DeepLabCut is listed by: OpenBehavior is related to: Anipose |
DOI:10.1038/s41593-018-0209-y | Free, Available for download, Freely Available | https://github.com/DeepLabCut/DeepLabCut | SCR_021398 | SciCrunch Registry | 2026-11-07 12:01:41 | 56 | ||||||||
|
Pyper project Resource Report Resource Website |
Pyper project (RRID:SCR_021431) | data or information resource, portal, project portal | Project related to motion tracking of specimen in open field. Provides software tool for motion tracking.Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version of Pyper allows to customise image processing to track different kind of objects. | Motion tracking, open field, track path of object, live feed from camera, live feed recorded video, track rodents, open field maze, OpenBehavior |
is listed by: OpenBehavior is related to: Pyper |
Free, Freely available | SCR_021431 | SciCrunch Registry | Pyper | 2026-11-07 12:01:47 | 0 | |||||||||
|
FaceMap project Resource Report Resource Website |
FaceMap project (RRID:SCR_021428) | data or information resource, portal, project portal | Project related to videographic processing of head fixed rodent behaviors. Provides software toolbox for unsupervised video analysis of rodent behavior. | Unsupervised video analysis, rodent behavior, videographic processing, head fixed rodent behavior, head fixed rodent, OpenBehavior |
is listed by: OpenBehavior is related to: FaceMap |
DOI:10.1101/306019 | Free, Freely available | SCR_021428 | SciCrunch Registry | FaceMap | 2026-11-07 12:01:42 | 0 | ||||||||
|
ZebraTrack project Resource Report Resource Website |
ZebraTrack project (RRID:SCR_021429) | data or information resource, portal, project portal | Project related to distraction free behavioral acquisition. Provides imaging setup for distraction free behavioral acquisition with automated tracking using open source ImageJ software and workflow for extraction of behavioral endpoints of zebrafish. Used for online tracking of larval zebrafish at high framerates.Provides user interface to run experiments as well as flexible design to allow definition of arbitrary open- and closed- loop experiments. | Track freely swimming larval zebrafish, realtime larval zebrafish swimming, larval zebrafish tracking, distraction free behavioral acquisition, behavior measurement, freely moving, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2016.07.004 | Free, Freely available | SCR_021429 | SciCrunch Registry | ZebraTrack | 2026-11-07 12:01:54 | 0 | ||||||||
|
Automated Rodent Tracker Resource Report Resource Website |
Automated Rodent Tracker (RRID:SCR_021510) | ART | data processing software, software application, software resource | Software tool to automatically track rodent position and movement.Used to track head movements, body movements and also aspects of body size. It is able to identify certain behaviours from video footage too, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker project |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-rodent-tracker-art/ | SCR_021510 | SciCrunch Registry | 2026-11-07 12:01:43 | 0 | |||||||
|
neurotic project Resource Report Resource Website |
neurotic project (RRID:SCR_021403) | data or information resource, portal, project portal | Project about synchronizing video and neural signals. Provides software Python toolbox for interactive characterization in neuroscience.Software tool used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats. | Anotate electrophysiology data, interactive characterization, neural data and video, signal data, signal filtering, spike detection, OpenBehavior |
is listed by: OpenBehavior is related to: neurotic |
DOI:10.1523/eneuro.0085-20.2020 | Free, Freely available | SCR_021403 | SciCrunch Registry | neurotic, NEUROTIC, NEUROscience Tool for Interactive Characterization | 2026-11-07 12:01:41 | 0 | ||||||||
|
DeepFly3D project Resource Report Resource Website |
DeepFly3D project (RRID:SCR_021400) | data or information resource, portal, project portal | Project related to deep learning based pose estimator for studying how neural circuits control limbed behaviors in tethered Drosophila. Includes Deep Fly image annotation tool for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose. | Image annotation, pose tracking, pose estimation, motor circuit, behavioral measure, accurate 3D pose estimation, OpenBehavior |
is listed by: OpenBehavior is related to: DeepFly3D |
DOI:10.7554/elife.48571 | Free, Freely available | SCR_021400 | SciCrunch Registry | DeepFly3D | 2026-11-07 12:01:54 | 0 | ||||||||
|
RodentJoystick Resource Report Resource Website |
RodentJoystick (RRID:SCR_023482) | data or information resource, portal, project portal | Project features single board real time input/output system including touch sensing joysticks to quantify mouse forelimb trajectories with micron millisecond spatiotemporal resolution, which resolves mouse forelimb kinematics and further allows extraction of primitives. Joystick increases spatial precision, and reduces displacement force. Joystick is then integrated into automated home cage system to train mice in center out reach task. | OpenBehavior, touch sensing joysticks, quantify mouse forelimb trajectories, micron millisecond spatiotemporal resolution, mouse forelimb kinematics, instrument | is listed by: OpenBehavior | PMID:30540551 | Free, Freely available | https://github.com/GoldbergLab/RodentJoystick/wiki | SCR_023482 | SciCrunch Registry | 2026-11-07 12:01:51 | 0 | ||||||||
|
Camera Control Resource Report Resource Website |
Camera Control (RRID:SCR_021614) | software resource, software toolkit | Open source software package that allows video to be recorded in sync with behavior. Python GUI and scripts allows investigators to record from multiple imaging source camera feeds with associated timestamps for each frame. Python API to record video system timestamps from Imaging Source USB cameras. Package requires Windows 10, Anaconda, and Git, and is compatible with Imaging Source USB3 cameras. Part of Camera Control project. | Multiple imaging, source camera feeds, , record video system timestamps, Imaging Source USB cameras, OpenBehavior |
is listed by: OpenBehavior is related to: Camera Control project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/camera-control/ | SCR_021614 | SciCrunch Registry | Camera_Control | 2026-11-07 12:04:02 | 0 | ||||||||
|
Dual Port Lick Detector Resource Report Resource Website |
Dual Port Lick Detector (RRID:SCR_021521) | software resource, software toolkit | Distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior |
is listed by: OpenBehavior is related to: Dual port Lick Detector project |
DOI:10.1152/jn.00500.2018 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/ | SCR_021521 | SciCrunch Registry | DP-Lick-Detector | 2026-11-07 12:03:55 | 0 | |||||||
|
SHARCQ Resource Report Resource Website 1+ mentions |
SHARCQ (RRID:SCR_022498) | software resource, software toolkit | Software tools to register histological section images and cell count locations to mouse brain atlas. Semi automated workflow and GUI for automated brain slice histology alignment, registration, and cell quantification. Used to explore Allen Mouse Brain Atlas, register asymmetric slice images to atlas using manual input, and analyze region of interest data by registering locations of fluorescently labeled cells to standardized regions of Atlas. | OpenBehavior, atlas registration, brain mapping, cell-type, slicing, histology, cell quantification, automated, brain atlas, mice |
is listed by: OpenBehavior is related to: Allen Mouse Brain Reference Atlas is related to: Allen Institute for Brain Science has parent organization: University of Colorado Boulder; Colorado; USA |
PMID:35396257 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/sharcq/ | SCR_022498 | SciCrunch Registry | Slice Histology Alignment, and Cell Quantification, Registration | 2026-11-07 12:04:13 | 2 | |||||||
|
AutomaticSleepScoringTool Resource Report Resource Website |
AutomaticSleepScoringTool (RRID:SCR_022300) | software resource, software toolkit | Software pipeline for sleep researchers to perform automatic sleep scoring for rodents. Artificial neural network for automated behavioral state classification in rats. | Artificial neural network, classifying behavioral states in rats, automatic sleep scoring, rat, electrophysiological readings, OpenBehavior | is listed by: OpenBehavior | DOI:10.7717/peerj.12127 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/automaticsleepscoringtool/ | SCR_022300 | SciCrunch Registry | 2026-11-07 12:03:58 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
