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http://www.wikijournalclub.org/wiki/Main_Page

A database which holds summaries of landmark clinical trials. The topics of contributed articles range across various biomedical fields and disciplines such as immunology, nephrology, and urology.

Proper citation: Wiki Journal Club (RRID:SCR_013783) Copy   

•   Source: SciCrunch Registry

http://lucene1.neuinfo.org/nif_resource/monthly_results/current/

An automatic pipeline based on an algorithm that identifies new resources in publications every month to assist the efficiency of NIF curators. The pipeline is also able to find the last time the resource's webpage was updated and whether the URL is still valid. This can assist the curator in knowing which resources need attention. Additionally, the pipeline identifies publications that reference existing NIF Registry resources as this is also of interest. These mentions are available through the Data Federation version of the NIF Registry, http://neuinfo.org/nif/nifgwt.html?query=nlx_144509 The RDF is based on an algorithm on how related it is to neuroscience. (hits of neuroscience related terms). Each potential resource gets assigned a score (based on how related it is to neuroscience) and the resources are then ranked and a list is generated.

Proper citation: NIF Registry Automated Crawl Data (RRID:SCR_012862) Copy   

•   Source: SciCrunch Registry

http://www.brimr.org/NIH_Awards/2010/NIH_Awards_2010.htm

Excel files available for download of ranking tables of NIH Funding to US Medical Schools in 2010, school and Principal Investigator (PI) rankings by Medical School Department, direct plus indirect costs (excluding both R & D contracts and American Recovery and Reinvestment Act (ARRA) Awards), etc. Categories under the Basic Science Department and Clinical Science Department are available as well as the rank of each School of Medicine from 2001-2010. The data in the 2010 Award files was obtained from the Research Portfolio Online Reporting Tool (RePORT) from the National Institutes of Health at http://report.nih.gov/award/trends/AggregateData.cfm. The Award Data correspond to the US Government fiscal year. Awards for 2010 correspond to those granted from 1 October 2009-30 September 2010. There is considerable variation on how universities credit awards and how the NIH deals with these variations.

Proper citation: Ranking Tables of NIH Funding to US Medical Schools in 2010 (RRID:SCR_013272) Copy   

•   Source: SciCrunch Registry

http://www.phylotree.org/

A phylogenetic tree of global human mitochondrial DNA variation, based on both coding- and control-region mutations, and including haplogroup nomenclature.

Proper citation: PhyloTree.org (RRID:SCR_012948) Copy   

•   Source: SciCrunch Registry

http://dataelixir.com

A web-based information resource providing current news and resources relevant to data science. Users can subscribe to the weekly newsletter by providing an email address or visit the site. The site displays the current week's news and houses an archive of their past newsletters.

Proper citation: Data Elixir (RRID:SCR_013762) Copy   

•   Source: SciCrunch Registry

http://www.informatics.jax.org/external/festing/mouse/STRAINS.shtml

A list of major inbred mouse strains from the Jackson laboratories. This list is not being actively maintained (found on Nov 27, 2013).

Proper citation: MGI strains (RRID:SCR_012950) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/stark_aging/

Behavioral and imaging data from about 120 participants aged 18-89. Data were collected as part of a grant to use high-resolution imaging and advanced behavioral tasks to understand how aging affects the hippocampus and how this is related to age-related cognitive decline. The full dataset includes traditional neuropsycholgical measures, hippocampal-specific behavioral measures, whole-brain DTI, high-resolution DTI of the medial temporal lobes, and structural MRI including segmentation of grey/white/CSF, of cortical regions and of hippocampal subfields.

Proper citation: Stark Cross-Sectional Aging (RRID:SCR_014171) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/ymdti/

A dataset which contains diffusion tensor images of 93 healthy, young male subjects.

Proper citation: YMDTI: Diffusion Tensor Images of Healthy Young Males (RRID:SCR_014183) Copy   

•   Source: SciCrunch Registry

http://microcircuits.epfl.ch/#/article/article_3_mph

Data set about mapping information provided as text files. The text files contain 3D representations of neuronal morphologies reconstructed using Neurolucida.

Proper citation: Human Brain Project Cell Morphology (RRID:SCR_014306) Copy   

•   Source: SciCrunch Registry

http://maps.ngdc.noaa.gov/arcgis/services/web_mercator/hazards/MapServer/WmsServer?request=GetCapabilities&service=WMS

This web service provides volcano and earthquake information. It also has tsunami events and tsunami tide gauges, and plate boundaries. BPR and DART stations. Also volcanic eruptions.

Proper citation: Volcano Web Service crawled by BCube (RRID:SCR_013735) Copy   

•   Source: SciCrunch Registry

http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/03334

A dataset generated longitudinal study that aims to explain the relationship between age and changes in the sense of control over one''''s life, over two follow-up periods. The main hypotheses are (a) over a period of time, the sense of control declines by an amount that increases with age; (b) the change in sense of control reflects an underlying change in biosocial function, which accelerates with age; (c) higher social status slows the decline in the sense of control, possibly by preserving biosocial function; and (d) changes in biosocial function and in the sense of control have deviation-amplifying reciprocal effects that accelerate age-dependent changes in the sense of control. This was a three-wave panel survey with fixed 3-year intervals and repeated assessments of the same variables. Questionnaire topics focused on: physical health (subjective health; activities of daily living; height and weight; health conditions; expected personal longevity); health behavior (exercise, smoking, diet, alcohol use); use of medical services (medical insurance coverage, prescription drug use); work status (current employment status; title of current job or occupation and job description; types of work, tasks, or activities; description of work or daily activity and interactions; supervisory status; management position and level; work history); sense of controlextent of agreement or disagreement with planning and responsibility versus luck and bad breaks; sense of victimhood versus control; social support and participation; personal and household demographics; marital and family relations; socioeconomic status; history of adversity. * Dates of Study: 1994-2001 * Sample Size: 2,593 (Waves 1-2); 1.144 (Wave 3) * Study Features: Longitudinal Data Archives: http://www.sscnet.ucla.edu/issr/da/da_catalog/da_catalog_titleRecord.php?studynumber=I3334V1

Proper citation: Aging Status and Sense of Control (ASOC) (RRID:SCR_013500) Copy   

•   Source: SciCrunch Registry

http://www.meta-analysis.com/index.php

A software package to do meta-analysis which works in a spreadsheet interface and also provides forest plots, which are useful for visualizing between-study heterogeneity.

Proper citation: CMA (RRID:SCR_012779) Copy   

•   Source: SciCrunch Registry

http://www.cdc.gov/nchs/lsoa.htm

A data set of a multicohort study of persons 70 years of age and over designed primarily to measure changes in the health, functional status, living arrangements, and health services utilization of two cohorts of Americans as they move into and through the oldest ages. The project is comprised of four surveys: * The 1984 Supplement on Aging (SOA) * The 1984-1990 Longitudinal Study of Aging (LSOA) * The 1994 Second Supplement on Aging (SOA II) * The 1994-2000 Second Longitudinal Study of Aging (LSOA II) The surveys, administered by the U.S. Census Bureau, provide a mechanism for monitoring the impact of proposed changes in Medicare and Medicaid and the accelerating shift toward managed care on the health status of the elderly and their patterns of health care utilization. SOA and SOA II were conducted as part of the in-person National Health Interview Survey (NHIS) of noninstitutionalized elderly people aged 55 years and over living in the United States in 1984, and at least 70 years of age in 1994, respectively. The 1984 SOA served as the baseline for the LSOA, which followed all persons who were 70 years of age and over in 1984 through three follow-up waves, conducted by telephone in 1986, 1988, and 1990. The SOA covered housing characteristics, family structure and living arrangements, relationships and social contracts, use of community services, occupation and retirement (income sources), health conditions and impairments, functional status, assistance with basic activities, utilization of health services, nursing home stays, and health opinions. Most of the questions from the SOA were repeated in the SOA II. Topics new to the SOA II included use of assistive devices and medical implants; health conditions and impairments; health behaviors; transportation; functional status, assistance with basic activities, unmet needs; utilization of health services; and nursing home stays. The major focus of the LSOA follow-up interviews was on functional status and changes that had occurred between interviews. Information was also collected on housing and living arrangements, contact with children, utilization of health services and nursing home stays, health insurance coverage, and income. LSOA II also included items on cognitive functioning, income and assets, family and childhood health, and more extensive health insurance information. The interview data are augmented by linkage to Medicare enrollment and utilization records, the National Death Index, and multiple cause-of-death records. Data Availability: Copies of the LSOA CD-ROMs are available through the NCHS or through ICPSR as Study number 8719. * Dates of Study: 1984-2000 * Study Features: Longitudinal * Sample Size: ** 1984: 16,148 (55+, SOA) ** 1984: 7,541(70+, LSOA) ** 1986: 5,151 (LSOA followup 1) ** 1988: 6,921 (LSOA followup 2) ** 1990: 5,978 (LSOA followup 3) ** 1994-6: 9,447 (LSOA II baseline) ** 1997-8: 7,998 (LSOA II wave 2) ** 1999-0: 6,465 (LSOA II wave 3) Link: * LSOA 1984-1990 ICPSR: http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/08719

Proper citation: Longitudinal Studies of Aging (RRID:SCR_013355) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/hfh_t1_hp_seg1/

Shared dataset which consists of skull-stripped T1 MRI images and segmented hippocampi of 163 Temporal Lobe Epilepsy (TLE) patients. The T1 and hippocampal segmentation data of TLE patients are uploaded in three separate datasets which can be accessed from the main site.

Proper citation: Epilepsy T1 and Hippocampal Segmentation Datasets (RRID:SCR_014926) Copy   

•   Source: SciCrunch Registry

http://www.premierbiosoft.com/dnamicroarray/index.html

Oligo and cDNA Microarray Design Software that designs thousands of primers and probes for oligo and cDNA microarrays in seconds.

Proper citation: Array Designer (RRID:SCR_010960) Copy   

•   Source: SciCrunch Registry

http://www.systat.com/

A commercial software tool for statistical analysis.

Proper citation: SyStat (RRID:SCR_010455) Copy   

•   Source: SciCrunch Registry

http://www.genomics.agilent.com/en/Microarray-Data-Analysis-Software/GeneSpring-GX/?cid=AG-PT-130&tabId=AG-PR-1061

Powerful, accessible statistical tools for fast visualization and analysis of microarrays - expression arrays, miRNA, exon arrays and genomics copy number data.

Proper citation: GeneSpring GX (RRID:SCR_010972) Copy   

•   Source: SciCrunch Registry

http://fcon_1000.projects.nitrc.org/indi/pro/nyu.html

Datasets including a collection of scans from 49 psychiatrically evaluated neurotypical adults, ranging in age from 6 to 55 years old, with age, gender and intelligence quotient (IQ) information provided. Future releases will include more comprehensive phenotypic information, and child and adolescent datasets, as well as individuals from clinical populations. The following data are released for every participant: * At least one 6-minute resting state fMRI scan (R-fMRI) * * One high-resolution T1-weighted mprage, defaced to protect patient confidentiality * Two 64-direction diffusion tensor imaging scans * Demographic information (age, gender) and IQ-measures (Verbal, Performance, and Composite; Weschler Abbreviated Scale of Intelligence - WASI) * Most participants have 2 R-fMRI scans, collected less than 1 hour apart in the same scanning session. Rest_1 is always collected first.

Proper citation: NYU Institute for Pediatric Neuroscience Sample (RRID:SCR_010458) Copy   

•   Source: SciCrunch Registry

http://fcon_1000.projects.nitrc.org/indi/pro/VirginiaTech.html

Dataset including a T1 weighted anatomical image as well as two 10-minute resting state scans acquired during the same session from 25 psychiatrically screened healthy adults (community sample) ranging in age from 18 to 65 years old, with age, sex, education level, and ethnicity provided. Some subjects also returned several weeks after the first scan for a second scanning session. The number of days between scan sessions, for subjects that had two sessions, is indicated in the demographics spreadsheet. The study scanning protocol included: # 13 sec localizer # 4 minute 38 second T1 weighted anatomical # Subject given instructions for resting state scan #1 # 10 minute 4 second resting state scan #1 # Subject given instructions for resting state scan #2 # 10 minute 4 second resting state scan #2 Scanning was performed on one of three different 3T Siemens TIM TRIOs at the Human Neuroimaging Lab at Baylor College of Medicine in Houston, Texas. All scans were acquired using the standard Siemen''s TIM 12-channel head matrix. The resting state scans were acquired with a custom sequence that is a slight modification to the standard Siemen''s EPI sequence that supports real-time fMRI. Images were acquired slightly oblique to minimize dephasing in the orbito-frontal cortex. Detailed scanning parameters are included in separate .pdf files.

Proper citation: Virginia Tech Carilion Research Institute Sample (RRID:SCR_010459) Copy   

•   Source: SciCrunch Registry

http://datasift.net/

A portal that allows users to track specific words, phrases or nearby relationships from social media sources including Twitter, Digg and others. Datasift aggregates, filters, records, and analyzes real-time data from a variety of social sources using our Curation Stream Definition Language (CSDL) allowing customers to curate their own news.

Proper citation: DataSift (RRID:SCR_010708) Copy   

•   Source: SciCrunch Registry