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http://code.google.com/p/popcomm-ontology/

An ontology that models material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology. The PCO is compliant with the Basic Formal Ontology (BFO) and is designed to be compatible with other OBO Foundry ontologies, such as the Gene Ontology (GO), which covers biological processes, and the Phenotypic Quality Ontology (PATO).

Proper citation: Population and Community Ontology (RRID:SCR_003462) Copy   

•   Source: SciCrunch Registry

http://wiki.cns.org

Wiki dedicated to neurosurgical topics, maintained by the Congress of Neurological Surgeons. Members can log in to contribute by adding or editing an article. A wiki is a collaborative technology for organizing information. Visitors can add, remove, and edit content. Like all other wikis, the CNS University's NeuroWiki allows linking among any number of pages. This ease of interaction and operation will engender collaborative authoring.

Proper citation: CNS NeuroWIki (RRID:SCR_003500) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/pharmgkb-owl/

An OWL representation of the data in PharmGKB, Comparative Toxicogenomics Database (CTD) and DrugBank and linked to related ontologies: ChEBI ontology, the Human Disease Ontology (DO), the Anatomical Therapeutic Chemical Classification System (ATC) and the Medical Subject Headings Thesaurus (MESH). The combined knowledge base can be exploited using the ELK reasoner.

Proper citation: PharmGKB Ontology (RRID:SCR_003529) Copy   

•   Source: SciCrunch Registry

http://www.oae-ontology.org

Biomedical ontology in the domain of adverse events that aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. AEO is a community-based ontology. Its development follows the OBO Foundry principles.

Proper citation: Ontology of Adverse Events (RRID:SCR_003428) Copy   

•   Source: SciCrunch Registry

http://www.mindtouch.com/

A web based social authoring and publishing environment that adheres to open standards and RESTful design principals. It provides wiki-like ease of use with a sophisticated web services framework for rapid application development, creating flexible workflows and rapid integration. MindTouch creates a vibrant real-time information fabric by federating content from across enterprise silos, such as CRM, ERP, file servers, email, databases, web services and more.

Proper citation: Mindtouch DekiWiki (RRID:SCR_003425) Copy   

•   Source: SciCrunch Registry

http://www.ebi.ac.uk/efo/

An application focused ontology modelling the experimental factors in ArrayExpress and Gene Expression Atlas. It has been developed to increase the richness of the annotations that are currently made in the ArrayExpress repository, to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology describes cross-product classes from reference ontologies in area such as disease, cell line, cell type and anatomy. The methodology employed in the development of EFO involves construction of mappings to multiple existing domain specific ontologies, such as the Disease Ontology and Cell Type Ontology. This is achieved using a combination of automated and manual curation steps and the use of a phonetic matching algorithm. The ontology is evaluated with use cases from the ArrayExpress repository and ArrayExpress Atlas. You may also browse the EFO in the NCBO Bioportal. Term submissions are welcome.

Proper citation: Experimental Factor Ontology (RRID:SCR_003574) Copy   

•   Source: SciCrunch Registry

http://wiki.healthgrid.org/Main_Page

THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. HealthGrid is a wiki dedicated to grids for health. It is maintained as a dynamic knowledge resource for the healthgrid community. The HealthGrid community (a world-wide initiative) gathers individuals from the public and private domain world-wide who are actively exploring the beneficial impact of healthgrid technology on healthcare provision and research.

Proper citation: HealthGrid Wiki (RRID:SCR_003572) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/adverse-event-reporting-ontology/

An ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events.

Proper citation: Adverse Event Reporting Ontology (RRID:SCR_003571) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MDCDRG

Ontology of Medical Diagnostic Categories-Diagnosis Related Groups

Proper citation: Medical Diagnostic Categories - Diagnosis Related Groups (RRID:SCR_003725) Copy   

•   Source: SciCrunch Registry

http://www.violinet.org/ovae/

A biomedical ontology in the area of vaccine adverse events aimed to represent and analyze various vaccine-specific adverse events. OVAE is an extension of the Ontology of Adverse Events (OAE) and the Vaccine Ontology (VO).

Proper citation: Ontology of Vaccine Adverse Events (RRID:SCR_003442) Copy   

•   Source: SciCrunch Registry

http://ncit.nci.nih.gov/

A reference terminology and core biomedical ontology for NCI that covers approximately 100,000 key biomedical concepts with terms, codes, definitions, and more than 200,000 inter-concept relationships. It is the reference terminology for NCI, NCI Metathesaurus and NCI informatics infrastructure covering vocabulary for clinical care, translational and basic research, and public information and administrative activities. It includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities; anatomy; agents, drugs and chemicals; genes and gene products and so on. In certain areas, like cancer diseases and combination chemotherapies, it provides the most granular and consistent terminology available. It combines terminology from numerous cancer research related domains, and provides a way to integrate or link these kinds of information together through semantic relationships. NCIt features: * Stable, unique codes for biomedical concepts; * Preferred terms, synonyms, definitions, research codes, external source codes, and other information; * Links to NCI Metathesaurus and other information sources; * Over 200,000 cross-links between concepts, providing formal logic-based definition of many concepts; * Extensive content integrated from NCI and other partners, much available as separate NCIt subsets * Updated frequently by a team of subject matter experts. NCIt is a widely recognized standard for biomedical coding and reference, used by a broad variety of public and private partners both nationally and internationally including the Clinical Data Interchange Standards Consortium Terminology (CDISC), the U.S. Food and Drug Administration (FDA), the Federal Medication Terminologies (FMT), and the National Council for Prescription Drug Programs (NCPDP).

Proper citation: NCI Thesaurus (RRID:SCR_003563) Copy   

•   Source: SciCrunch Registry

https://www.ibtbioservices.com/

Research organization offering R&D services to identify and develop vaccines and therapeutics for infectious diseases.

Proper citation: IBT Bioservices (RRID:SCR_012195) Copy   

•   Source: SciCrunch Registry

http://www.aeirtec.com/

Provides biomarker service activity for both large pharma and biotech.

Proper citation: Aeirtec Limited (RRID:SCR_012199) Copy   

•   Source: SciCrunch Registry

https://www.seqmatic.com/

SeqMatic provides comprehensive next generation sequencing services for DNA, RNA, and miRNA sequencing. We are proud to offer high quality sequencing with very fast turnaround time. We also offer customized experiment solutions including library generation, sequencing, and data analysis tailored to each customer''s needs.

Proper citation: SeqMatic (RRID:SCR_012194) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/genewake

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2023. GeneWake GmbH is a pharmacogenomics company with a sound scientific background in biomarker analysis in the field of oncology. Our mission is to realize a personalized and tailor-made cancer treatment by targeted analysis of relevant gene expression levels in tumour tissue and in circulating tumour cells in blood. By employing bioinformatical algorithms based on our knowledge in pathway structure and microarray data from public sources, biomarker screening can be limited to a low-density scale. The output of 10-20 potential genes can be used for ptient stratification or therapy tracking. In addition, GeneWake offers contract research like DNA and RNA sequencing and annotation, SNP genotyping, mutation detection, multiplex PCR, kit development, immune histology and genotyping for clinical studies.

Proper citation: GeneWake (RRID:SCR_012212) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/scipac

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2023. Our contract antibody service is designed to be highly flexible to ensure we meet the individual needs of our customers. Whether you are looking for a complete start to finish service or simply one aspect such as clone yield optimisation, then SCIPAC can meet your needs. Our service caters for both monoclonal antibodies as well as recombinant antibodies.

Proper citation: SCIPAC (RRID:SCR_012172) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/frontier-scientific-services-inc

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2023. Since 1988, Frontier Scientific Services, Inc. (FSSI) has functioned as a specialty CRO, working to enable dramatic cost reductions via outsourced compound management, reformatting, sample procurement, liquid handling, and compound library management. Our infrastructure and distribution capabilities empower smaller groups with logistics capabilities that would often not be available in-house, as well as offering the same services to larger groups, which maximizes their capital efficiency.

Proper citation: Frontier Scientific Services (RRID:SCR_012189) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/vector-facility

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2024. Main goal of the Vector facility is development and implementation of viral vectors and viral vector-based techniques, which allow manipulating neural circuits and characterizing neural populations in laboratory animals. We also see the Vector facility as a pole of shared resources and expertise. Many systems of recombinant viruses have been used in a wide number of applications, namely as gene delivery tools. Recombinant adeno-associated virus (rAAV) is very frequently a gene delivery vector of choice, especially in the field of gene therapy.

Proper citation: CNP Vector Facility (RRID:SCR_012288) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/vib-compound-screening-facility

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2024. Compound screening facility that has several drug-like compound collections available that amount to a total of about 74,000 compounds and a human siRNA library that targets almost 8,000 genes. State-of-the-art liquid handling systems and detection technologies are available for screening in-house or custom collections in 96- or 384-well plate format. The platform is compatible with biochemical assays, cell-based assays in a broad range of cellular systems and assays in the model plant Arabidopsis thaliana. Its core activities consist of managing the VIB screening collections, assisting researchers in assay development / automation and performing high-throughput screenings. After hit clustering and selection, the VIB-CSF team can contribute in structure-activity analysis, IC50 measurements, cytotoxicity analysis, secondary screening for hit validation and counter screening for specificity analysis.

Proper citation: VIB Compound Screening Facility (RRID:SCR_012256) Copy   

•   Source: SciCrunch Registry

http://www.scienceexchange.com/facilities/data-for-solutions-inc

Data for Solutions, Inc. is a small scientific consulting firm offering Comprehensive Services in Study Design, Data Analysis, Organizational and Systems Analysis and Evaluation, International Health Issues, and Scientific Writing. We specialize in research design and data analysis, with expertise in research methodology, grant development, program evaluation, quality assessment, data collection techniques, mathematical and statistical analysis, writing results for professional and peer-reviewed outlets, and creating data-driven business reports and presentations. We strive to be responsive to clients'' needs and constraints, creative in our solutions to statistical and data management challenges, and determined in our attention to detail. Our mission is to increase the productive use of scientifically sound and ethical methodological, numerical, and statistical research techniques by research, instructional, and administrative professionals. To accomplish this mission, we are engaged in research, consulting, and training activities, including: ?? Providing effective client/consultant interchange through in-person appointments, telephone appointments, and e-mail. ?? Offering indirect education and consulting through Web-based tutorials, documentation, and training program development. ?? Developing and delivering training through short courses and class tutorials. ?? Providing contractual grant development and data analysis services for University faculty and graduate students. ?? Engaging in continual professional development in order to maintain technical leadership in statistical and mathematical applications. Data for Solutions, Inc. can also design individualized training for your statistical and data analytic need.

Proper citation: Data for Solutions (RRID:SCR_012390) Copy   

•   Source: SciCrunch Registry