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http://www.nitrc.org/projects/tehran/
Data set of addiction studies compiled by the NeuroImaging and Analysis Group (NIAG).
Proper citation: NIAG Addiction Data (RRID:SCR_015523) Copy
Long-term study of brain development and child health in the United States. The study tracks subjects' biological and behavioral development through adolescence into young adulthood to determine how childhood experiences (such as sports, videogames, social media, unhealthy sleep patterns, and smoking) interact with each other and with a child’s changing biology to affect brain development and social, behavioral, academic, health, and other outcomes.
Proper citation: ABCD Study (RRID:SCR_015769) Copy
https://pypi.org/project/pmlb/
Python wrapper for Penn Machine Learning Benchmark data repository. Large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms. Part of PyPI https://pypi.org/
Proper citation: Penn machine learning benchmark repository (RRID:SCR_017138) Copy
https://www.uniprot.org/proteomes/
Protein sets from fully sequenced genomes. Proteomes portal offers protein sequence sets obtained from translation of completely sequenced genomes. Published genomes from NCBI Genome are brought into UniProt if genome is annotated and set of coding sequences is available. Number of predicted coding sequences falls within statistically significant range of published proteomes from neighbouring species.
Proper citation: UniProt Proteomes (RRID:SCR_018666) Copy
http://www.bioinformatics.org/go2msig/
THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 24, 2020. Software tool as automated Gene Ontology based multi species gene set generator for gene set enrichment analysis. Used to generate gene sets required for Gene Set Enrichment Analysis for almost any organism for which GO term association data exists.
Gene set collections can be automatically created for wide variety of species.
Proper citation: GO2MSIG (RRID:SCR_018359) Copy
https://bioconductor.org/packages/FlowSorted.Blood.450k/
Illumina HumanMethylation data on sorted blood cell populations.
Proper citation: FlowSorted.Blood.450k R package (RRID:SCR_018003) Copy
https://trendscenter.org/data/
Neuroimaging datasets available from TReNDs including resting state MRI.
Proper citation: Translational Research in Neuroimaging and Data Science datasets (RRID:SCR_021013) Copy
https://mix-n-match.toolforge.org/#/
Software tool for importing data sets into Wikidata. Can list entries of some external databases, and allows users to match them against Wikidata items.
Proper citation: Mix n Match (RRID:SCR_021302) Copy
https://bioconductor.org/packages/FlowSorted.CordBloodCombined.450k/
Software package includes combination of four cell references for umbilical cord blood deconvolution using IlluminaHumanMethylation arrays 450K and EPIC.
Proper citation: FlowSorted.CordBloodCombined.450k (RRID:SCR_022849) Copy
Commercial organization provides software tools for video and data analysis used in healthare and education.Provides performance analysis solutions for team sports and individual athletes at every level.
Proper citation: Dartfish (RRID:SCR_023501) Copy
http://code.google.com/p/popcomm-ontology/
An ontology that models material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology. The PCO is compliant with the Basic Formal Ontology (BFO) and is designed to be compatible with other OBO Foundry ontologies, such as the Gene Ontology (GO), which covers biological processes, and the Phenotypic Quality Ontology (PATO).
Proper citation: Population and Community Ontology (RRID:SCR_003462) Copy
Wiki dedicated to neurosurgical topics, maintained by the Congress of Neurological Surgeons. Members can log in to contribute by adding or editing an article. A wiki is a collaborative technology for organizing information. Visitors can add, remove, and edit content. Like all other wikis, the CNS University's NeuroWiki allows linking among any number of pages. This ease of interaction and operation will engender collaborative authoring.
Proper citation: CNS NeuroWIki (RRID:SCR_003500) Copy
http://code.google.com/p/pharmgkb-owl/
An OWL representation of the data in PharmGKB, Comparative Toxicogenomics Database (CTD) and DrugBank and linked to related ontologies: ChEBI ontology, the Human Disease Ontology (DO), the Anatomical Therapeutic Chemical Classification System (ATC) and the Medical Subject Headings Thesaurus (MESH). The combined knowledge base can be exploited using the ELK reasoner.
Proper citation: PharmGKB Ontology (RRID:SCR_003529) Copy
Biomedical ontology in the domain of adverse events that aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. AEO is a community-based ontology. Its development follows the OBO Foundry principles.
Proper citation: Ontology of Adverse Events (RRID:SCR_003428) Copy
A web based social authoring and publishing environment that adheres to open standards and RESTful design principals. It provides wiki-like ease of use with a sophisticated web services framework for rapid application development, creating flexible workflows and rapid integration. MindTouch creates a vibrant real-time information fabric by federating content from across enterprise silos, such as CRM, ERP, file servers, email, databases, web services and more.
Proper citation: Mindtouch DekiWiki (RRID:SCR_003425) Copy
An application focused ontology modelling the experimental factors in ArrayExpress and Gene Expression Atlas. It has been developed to increase the richness of the annotations that are currently made in the ArrayExpress repository, to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology describes cross-product classes from reference ontologies in area such as disease, cell line, cell type and anatomy. The methodology employed in the development of EFO involves construction of mappings to multiple existing domain specific ontologies, such as the Disease Ontology and Cell Type Ontology. This is achieved using a combination of automated and manual curation steps and the use of a phonetic matching algorithm. The ontology is evaluated with use cases from the ArrayExpress repository and ArrayExpress Atlas. You may also browse the EFO in the NCBO Bioportal. Term submissions are welcome.
Proper citation: Experimental Factor Ontology (RRID:SCR_003574) Copy
http://wiki.healthgrid.org/Main_Page
THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. HealthGrid is a wiki dedicated to grids for health. It is maintained as a dynamic knowledge resource for the healthgrid community. The HealthGrid community (a world-wide initiative) gathers individuals from the public and private domain world-wide who are actively exploring the beneficial impact of healthgrid technology on healthcare provision and research.
Proper citation: HealthGrid Wiki (RRID:SCR_003572) Copy
http://code.google.com/p/adverse-event-reporting-ontology/
An ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events.
Proper citation: Adverse Event Reporting Ontology (RRID:SCR_003571) Copy
http://purl.bioontology.org/ontology/MDCDRG
Ontology of Medical Diagnostic Categories-Diagnosis Related Groups
Proper citation: Medical Diagnostic Categories - Diagnosis Related Groups (RRID:SCR_003725) Copy
A biomedical ontology in the area of vaccine adverse events aimed to represent and analyze various vaccine-specific adverse events. OVAE is an extension of the Ontology of Adverse Events (OAE) and the Vaccine Ontology (VO).
Proper citation: Ontology of Vaccine Adverse Events (RRID:SCR_003442) Copy
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